Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DMRTC2 Sequence: fasta or formatted (367aa) NCBI GI: 94536830
Description:

DMRT-like family C2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         30           2
 C cysteine            3.8         14           1
 D aspartate           1.9          7           1
 E glutamate           3.8         14           1
 F phenylalanine       1.9          7           1
 G glycine             7.9         29           2
 H histidine           4.1         15           1
 I isoleucine          2.2          8           1
 K lysine              2.7         10           2
 L leucine            10.6         39           3
 M methionine          1.4          5           1
 N asparagine          1.4          5           1
 P proline            17.4         64           3
 Q glutamine           6.3         23           2
 R arginine            6.0         22           3
 S serine              8.4         31           2
 T threonine           5.2         19           2
 V valine              4.6         17           2
 W tryptophan          1.6          6           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DMRT-like family C2 
DMRTC1B               0.137   DMRT-like family C1B 
DMRTC1                0.137   DMRT-like family C1 
DMRT3                 0.103   doublesex and mab-3 related transcription factor 3 [...
DMRT2                 0.095   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.095   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.095   doublesex and mab-3 related transcription factor 2 ...
DMRTA1                0.082   DMRT-like family A1 
DMRT1                 0.080   doublesex and mab-3 related transcription factor 1 [...
DMRTA2                0.080   DMRT-like family A2 
DMRTB1                0.064   DMRT-like family B with proline-rich C-terminal, 1 [...
PRB1                  0.046   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RERE                  0.042   atrophin-1 like protein isoform b 
RERE                  0.042   atrophin-1 like protein isoform a 
RERE                  0.042   atrophin-1 like protein isoform a 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.042   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
SF1                   0.038   splicing factor 1 isoform 1 
PTPN23                0.038   protein tyrosine phosphatase, non-receptor type 23 [...
ZNF828                0.037   zinc finger protein 828 
PRB2                  0.036   proline-rich protein BstNI subfamily 2 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
TSC22D2               0.036   TSC22 domain family, member 2 
SF1                   0.036   splicing factor 1 isoform 2 
CPSF6                 0.034   cleavage and polyadenylation specific factor 6, 68 ...
FMN2                  0.034   formin 2 
MUC2                  0.034   mucin 2 precursor 
SF3A2                 0.034   splicing factor 3a, subunit 2 
CASKIN1               0.033   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press