Guide to the Human Genome
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Name: MEGF9 Sequence: fasta or formatted (639aa) NCBI GI: 122937440
Description:

multiple EGF-like-domains 9

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         53           8
 C cysteine            6.7         43           2
 D aspartate           2.8         18           2
 E glutamate           5.0         32           2
 F phenylalanine       2.0         13           1
 G glycine             7.5         48           4
 H histidine           1.9         12           1
 I isoleucine          3.6         23           3
 K lysine              3.9         25           2
 L leucine             6.9         44           2
 M methionine          0.8          5           1
 N asparagine          5.5         35           2
 P proline            10.0         64           3
 Q glutamine           3.6         23           1
 R arginine            2.8         18           1
 S serine              9.5         61           3
 T threonine           9.9         63           3
 V valine              5.5         35           3
 W tryptophan          0.8          5           1
 Y tyrosine            3.0         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   multiple EGF-like-domains 9 
LAMB1                 0.131   laminin, beta 1 precursor 
LAMB2                 0.126   laminin, beta 2 precursor 
LAMB4                 0.112   laminin, beta 4 
USH2A                 0.103   usherin isoform B 
USH2A                 0.103   usherin isoform A 
LAMA2                 0.101   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.101   laminin alpha 2 subunit isoform a precursor 
LAMA1                 0.098   laminin, alpha 1 precursor 
LAMA5                 0.088   laminin alpha 5 
LAMC1                 0.086   laminin, gamma 1 precursor 
LAMC3                 0.082   laminin, gamma 3 precursor 
LAMA4                 0.081   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.081   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.081   laminin, alpha 4 isoform 2 precursor 
LAMA3                 0.078   laminin alpha 3 subunit isoform 1 
LAMA3                 0.078   laminin alpha 3 subunit isoform 3 
LAMC2                 0.072   laminin, gamma 2 isoform b precursor 
LAMC2                 0.072   laminin, gamma 2 isoform a precursor 
LAMB3                 0.067   laminin, beta 3 precursor 
LAMB3                 0.067   laminin, beta 3 precursor 
LAMB3                 0.067   laminin, beta 3 precursor 
HSPG2                 0.060   heparan sulfate proteoglycan 2 
MEGF10                0.058   multiple EGF-like-domains 10 
LAMA3                 0.058   laminin alpha 3 subunit isoform 4 
LAMA3                 0.058   laminin alpha 3 subunit isoform 2 
MEGF11                0.057   multiple EGF-like-domains 11 
PEAR1                 0.057   platelet endothelial aggregation receptor 1 
NTN4                  0.056   netrin 4 
MEGF8                 0.052   multiple EGF-like-domains 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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