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Search of human proteins with 14249150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249150 single stranded DNA binding protein 4 isoform a
[Homo sapiens]
(385 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 818 0.0
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 754 0.0
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 607 e-174
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 565 e-161
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 563 e-160
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 560 e-160
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 82 6e-16
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 82 8e-16
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 82 8e-16
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 82 8e-16
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 81 1e-15
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 80 4e-15
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 79 9e-15
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 79 9e-15
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 78 1e-14
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 77 2e-14
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 77 3e-14
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 77 3e-14
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 75 8e-14
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 75 1e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 75 1e-13
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 74 2e-13
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 74 2e-13
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 74 2e-13
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 74 2e-13
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 74 3e-13
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 73 4e-13
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 73 5e-13
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 73 5e-13
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 73 5e-13
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 818 bits (2113), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA
Sbjct: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
Query: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 240
MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR
Sbjct: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 240
Query: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA
Sbjct: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
Query: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 360
GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG
Sbjct: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 360
Query: 361 EMAAAGTFLHPFPSESYSPGMTMSV 385
EMAAAGTFLHPFPSESYSPGMTMSV
Sbjct: 361 EMAAAGTFLHPFPSESYSPGMTMSV 385
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 754 bits (1947), Expect = 0.0
Identities = 363/385 (94%), Positives = 363/385 (94%), Gaps = 22/385 (5%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
FFQ PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA
Sbjct: 121 FFQ----------------------PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 158
Query: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 240
MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR
Sbjct: 159 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 218
Query: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA
Sbjct: 219 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 278
Query: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 360
GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG
Sbjct: 279 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 338
Query: 361 EMAAAGTFLHPFPSESYSPGMTMSV 385
EMAAAGTFLHPFPSESYSPGMTMSV
Sbjct: 339 EMAAAGTFLHPFPSESYSPGMTMSV 363
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 607 bits (1566), Expect = e-174
Identities = 285/394 (72%), Positives = 329/394 (83%), Gaps = 15/394 (3%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FFQGPPGSQPS------PHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ 174
FFQGPPGSQPS PHNP++ MMGPH QPFMSPR+ GGPRP +RM +QPP G+PG+Q
Sbjct: 120 FFQGPPGSQPSPHAQPPPHNPSS-MMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ 178
Query: 175 PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPA 232
PLLP +M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P
Sbjct: 179 PLLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPG 236
Query: 233 MNMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYT 291
+NMGPG PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT
Sbjct: 237 INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYT 296
Query: 292 IMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSN 351
++NP+ G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN
Sbjct: 297 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 356
Query: 352 APGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 385
PGTPRDDGE+ G FLH F +++YSP MTMSV
Sbjct: 357 PPGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV 388
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 565 bits (1457), Expect = e-161
Identities = 272/394 (69%), Positives = 313/394 (79%), Gaps = 35/394 (8%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FFQGPPGSQPS------PHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ 174
FFQGPPGSQPS PHNP++ MMGPH SQPP G+PG+Q
Sbjct: 120 FFQGPPGSQPSPHAQPPPHNPSS-MMGPH--------------------SQPPGGVPGTQ 158
Query: 175 PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPA 232
PLLP +M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P
Sbjct: 159 PLLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPG 216
Query: 233 MNMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYT 291
+NMGPG PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT
Sbjct: 217 INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYT 276
Query: 292 IMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSN 351
++NP+ G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN
Sbjct: 277 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 336
Query: 352 APGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 385
PGTPRDDGE+ G FLH F +++YSP MTMSV
Sbjct: 337 PPGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV 368
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 563 bits (1450), Expect = e-160
Identities = 267/388 (68%), Positives = 309/388 (79%), Gaps = 30/388 (7%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
FF QPFMSPR+ GGPRP +RM +QPP G+PG+QPLLP +
Sbjct: 120 FF----------------------QPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
Query: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPAMNMGPG 238
M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P +NMGPG
Sbjct: 158 MDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPG 215
Query: 239 VRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG 297
PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT++NP+
Sbjct: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 275
Query: 298 QGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPR 357
G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN PGTPR
Sbjct: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
Query: 358 DDGEMAAAGTFLHPFPSESYSPGMTMSV 385
DDGE+ G FLH F +++YSP MTMSV
Sbjct: 336 DDGEL--GGNFLHSFQNDNYSPSMTMSV 361
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 560 bits (1443), Expect = e-160
Identities = 269/387 (69%), Positives = 303/387 (78%), Gaps = 28/387 (7%)
Query: 1 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF 59
MY KG SAVPSDSQAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
Query: 60 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA 119
LHSWWCVFWDLYCAAP+RRE CEHS EAKAF DYSAAAAPSPV+G++ PGD M G +
Sbjct: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
Query: 120 GFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 179
GFF QPFMSPR+PGGPRP LR+P+Q G+PGSQPLLP
Sbjct: 121 GFF----------------------QPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPS 158
Query: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 239
M+P+ R QGHP+MGGPMQR+TPPRGM +GPQ+YGG MRPP N+L GPG+P MNMGPG
Sbjct: 159 GMDPT-RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217
Query: 240 RGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ 298
PW +P + NSIPYSS+SPG+Y GPPGGGGPPGTPIMPSP DSTNS +NMYT+MN +
Sbjct: 218 GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPP 277
Query: 299 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRD 358
G R NFP+GPG +GPM + ME HH+NGSLGSGDMD + K+SP ++ LSN PGTPRD
Sbjct: 278 GPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRD 336
Query: 359 DGEMAAAGTFLHPFPSESYSPGMTMSV 385
DGEM G FL+PF SESYSP MTMSV
Sbjct: 337 DGEM--GGNFLNPFQSESYSPSMTMSV 361
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 82.4 bits (202), Expect = 6e-16
Identities = 79/262 (30%), Positives = 100/262 (38%), Gaps = 16/262 (6%)
Query: 123 QGPPGSQPSPHNPNAP-MMGPHGQPFMSPR-----FPGGPRPTLRMPSQPPAGLPGSQPL 176
+GPPG P P GP G P R PG P + +PG P
Sbjct: 766 RGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGP-PG 824
Query: 177 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 236
PGAM P P G P GP + GP G PP S+ GP P G
Sbjct: 825 PPGAMGP-PGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPG 883
Query: 237 PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNP 295
G+ GP P + S+S +GPPG GPPG PG + E +
Sbjct: 884 EGLPGPPGPPGS----FLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFST 939
Query: 296 IGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG--SGDMDGLPKSSPGAVAGLSNAP 353
G + N PGP GP V G+LG SG +G SS V+G P
Sbjct: 940 SGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEG-GSSSTMYVSGPPGPP 998
Query: 354 GTPRDDGEMAAAGTFLHPFPSE 375
G P G ++++G + + SE
Sbjct: 999 GPPGPPGSISSSGQEIQQYISE 1020
Score = 73.2 bits (178), Expect = 4e-13
Identities = 87/288 (30%), Positives = 104/288 (36%), Gaps = 39/288 (13%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP 183
GPPGS A GPHG P + PG P S P G PG P+ +
Sbjct: 636 GPPGSGEKGERGAAGEPGPHGPPGV----PGSVGPKGSSGSPGPQGPPG--PVGLQGLRG 689
Query: 184 SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGL--------PAM 233
G GPM P GP+ G GMR P ++ PG P
Sbjct: 690 EVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDG 749
Query: 234 NMGP-GVRGPWASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMP-------SPGD-S 282
+ GP G +G P P S PG TGP G G PGTP P +PG
Sbjct: 750 HQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIV 809
Query: 283 TNSSENMYTIMNPIGQ--GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP- 339
T+ +M T+ P G G P PGP GP E ++ G G G P
Sbjct: 810 TSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPG 869
Query: 340 KSSPGAVA-------GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
S PG GL PG P ++ + TFL P PG
Sbjct: 870 PSIPGPPGPRGPPGEGLPGPPGPP--GSFLSNSETFLSGPPGPPGPPG 915
Score = 71.6 bits (174), Expect = 1e-12
Identities = 76/233 (32%), Positives = 91/233 (39%), Gaps = 17/233 (7%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM----GPHGQPFMSP 150
A P P G G QGPPG P P P P + GP G P
Sbjct: 828 AMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGP-PGPRGPPGPSIPGPPGPRGPP--GE 884
Query: 151 RFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASV 209
PG P P S L G P PG P P+ QG P G P G ++
Sbjct: 885 GLPGPPGPPGSFLSNSETFLSGP-PGPPGP--PGPKGDQGPPGPRGHQGEQGLP-GFSTS 940
Query: 210 GPQSYGGGMRPPPNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 268
G S+G ++ PP GP P + G PGV G PSG S SSS +GPPG
Sbjct: 941 GSSSFGLNLQGPPGP-PGPQGPKGDKGDPGVPGALGIPSGPS-EGGSSSTMYVSGPPGPP 998
Query: 269 GPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMS 319
GPPG P + S G + Y + I P G PGP GP+ ++
Sbjct: 999 GPPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTIT 1051
Score = 69.7 bits (169), Expect = 4e-12
Identities = 84/316 (26%), Positives = 104/316 (32%), Gaps = 49/316 (15%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMS----P 150
AA P P PG GS + QGPPG + G G P + P
Sbjct: 648 AAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQG-----LRGEVGLPGVKGDKGP 702
Query: 151 RFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVG 210
P GP+ + P GL G PG M P A G P G M P G
Sbjct: 703 MGPPGPKGD--QGEKGPRGLTGE----PG-MRGLPGAVGEPGAKGAMGPAGPDGHQGPRG 755
Query: 211 PQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 262
Q G G+R PP PG P + G +G +P I +PG
Sbjct: 756 EQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSS 815
Query: 263 --------GPPGGGGPPGTPIMPSPGDSTN--SSENMYTIMNPIG----QGAGRANFPLG 308
GPPG GPPG P P P + + + P G +G + P
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875
Query: 309 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTF 368
PGP GP P G +S ++G PG P G+ G
Sbjct: 876 PGPRGPPGEGLPGPP---------GPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPR 926
Query: 369 LHPFPSESYSPGMTMS 384
H E PG + S
Sbjct: 927 GH--QGEQGLPGFSTS 940
Score = 36.2 bits (82), Expect = 0.051
Identities = 40/137 (29%), Positives = 49/137 (35%), Gaps = 39/137 (28%)
Query: 237 PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPI 296
PG +G SP GP G G PGTP +P P + +P
Sbjct: 569 PGPKGDMGSP----------------GPKGDRGFPGTPGIPGP------------LGHPG 600
Query: 297 GQGAGRANFPLG-PGPEGPMAAMSA---MEPHHVNGSLGSGDMDGLPKSSPGAVA--GLS 350
QG +G PG EGPM M P G GSG+ K GA G
Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGE-----KGERGAAGEPGPH 655
Query: 351 NAPGTPRDDGEMAAAGT 367
PG P G ++G+
Sbjct: 656 GPPGVPGSVGPKGSSGS 672
Score = 35.0 bits (79), Expect = 0.11
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 212 QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPP 271
+ Y G R PP PG A G + +A S + Y SSS G G PG GPP
Sbjct: 1101 RQYLMGPRGPPGP---PG--ASGDGSLLSLDYAELSSRILSYMSSS-GISIGLPGPPGPP 1154
Query: 272 GTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 331
G P S E + +++ +G+ PGP GP P +V S+
Sbjct: 1155 GLP--------GTSYEELLSLL----RGSEFRGIVGPPGPPGPPGI-----PGNVWSSIS 1197
Query: 332 SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
D+ SS AGLS PG P G G
Sbjct: 1198 VEDL-----SSYLHTAGLSFIPGPPGPPGPPGPRG 1227
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 237 PGVRGPWASPSGNSIPYSSSSPGS----YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 292
PG GP P + S GS GPPG GPPG +P S+ S E++ +
Sbjct: 1148 PGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPG---IPGNVWSSISVEDLSSY 1204
Query: 293 MNPIGQG--AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 350
++ G G P PGP GP A+ + S +SP + +
Sbjct: 1205 LHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIV 1264
Query: 351 NAPGTPRDDG 360
PG P G
Sbjct: 1265 GPPGPPGPQG 1274
Score = 33.1 bits (74), Expect = 0.43
Identities = 51/213 (23%), Positives = 76/213 (35%), Gaps = 29/213 (13%)
Query: 159 TLRMPSQP-PAGLPGSQ-----PLLPGA----MEPSPRAQGHPSMGGPMQRVTPPRGMAS 208
++ +P P P GLPG+ LL G+ + P G P + G V +
Sbjct: 1144 SIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPG---NVWSSISVED 1200
Query: 209 VGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 262
+ + G+ P PG P PGV G A+ + + S SY
Sbjct: 1201 LSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVR 1260
Query: 263 -------GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAG-RANFPLGPGPEGP 314
GPPG GPPG + S S + + + + + +G+ ++ G G G
Sbjct: 1261 SFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGS 1320
Query: 315 MAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA 347
+ A A G G D P GA A
Sbjct: 1321 LGAGGAF--GEAAGDRGPYGTDIGPGGGYGAAA 1351
Score = 31.6 bits (70), Expect = 1.3
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDG----LPKSSPGAVAGLSNAPGTP 356
G FP PG GP+ P GS+G M+G + P G + PG+
Sbjct: 582 GDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGS- 640
Query: 357 RDDGEMAAAGTFLHPFPSESYSPGMTMSV 385
+ GE AAG P PG+ SV
Sbjct: 641 GEKGERGAAGE-----PGPHGPPGVPGSV 664
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 82.0 bits (201), Expect = 8e-16
Identities = 90/294 (30%), Positives = 107/294 (36%), Gaps = 49/294 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-------MMGPHGQPFMSPRFPGGP-RPT 159
PG G G GPPG + P P P +G G P P FPG P
Sbjct: 695 PGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG-PPGFPGPKGEPG 752
Query: 160 LRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQS 213
+P P P GLPG + GA+ P +G P GP R + P+G VGP
Sbjct: 753 FALPGPPGPPGLPGFK----GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNG 805
Query: 214 YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGG 269
G M PP L G G+ PG+ GP P + IP PG GPPG G
Sbjct: 806 QPGPMGPP--GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERG 863
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PG P P P + P G G+A PG +G M M P
Sbjct: 864 SPGIPGAPGP-------------IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Query: 328 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
G G + GL GL PG P GE + G P P P +
Sbjct: 911 GIPGRSGVPGLKGDD-----GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 78.2 bits (191), Expect = 1e-14
Identities = 90/320 (28%), Positives = 115/320 (35%), Gaps = 69/320 (21%)
Query: 124 GPPGSQPSPHNPNAP-MMGPHGQPFMSPR-----FPG--GPRPTLRMPSQP-PAGLPG-- 172
GPPG + SP P AP +GP G P + + FPG G + P P P G+PG
Sbjct: 857 GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS 916
Query: 173 ------------SQPLLPGAMEPSPRAQGHPSMGGPMQRVTP----------PRGMASV- 209
QP LPG ++G P + GP + P G+ +
Sbjct: 917 GVPGLKGDDGLQGQPGLPGPTGEKG-SKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIP 975
Query: 210 ---GPQSYGG--------------GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIP 252
GP+ Y G G+ PP PGLP PG+ GP G
Sbjct: 976 GVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGD 1031
Query: 253 YSSSSPGSYTGPPGGGGPPGTPIMPS-------PGDSTNSSENMYTIMNPIGQGAGRANF 305
P GPPG G PG P P GD SS + + P G+ G +
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGE-PGLPGY 1090
Query: 306 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS-SPGAVAGLSNAPGTPRDDGEMAA 364
P PG +G + G+ G + G P + P G+S PG P GE
Sbjct: 1091 PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Query: 365 AGTFLHPF----PSESYSPG 380
G HP P E PG
Sbjct: 1151 VGGGGHPGQPGPPGEKGKPG 1170
Score = 73.2 bits (178), Expect = 4e-13
Identities = 80/271 (29%), Positives = 104/271 (38%), Gaps = 31/271 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHG-------QPFMSPRFPGGPRPT 159
PGD G GPPG + +P P P ++GP G F P+ GP
Sbjct: 987 PGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Query: 160 LRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-- 216
+P QP + GLPG + +P + G P + GP P + G + G
Sbjct: 1047 SGVPGQPGSPGLPGQKG---DKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDP 1103
Query: 217 ---GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGT 273
G+ P + PGLP PG GP P G S P + GP GGGG PG
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGF---PGTPGP-PGPKGISGPPGNPGLPGEPGPVGGGGHPGQ 1159
Query: 274 PIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 331
P PG+ ++ I P GQ G+ F PGP G + G G
Sbjct: 1160 P--GPPGEKGKPGQD--GIPGPAGQKGEPGQPGFG-NPGPPGLPGLSGQKGDGGLPGIPG 1214
Query: 332 SGDMDGLPKSSPG--AVAGLSNAPGTPRDDG 360
+ + G PK PG G+ PG P G
Sbjct: 1215 NPGLPG-PKGEPGFHGFPGVQGPPGPPGSPG 1244
Score = 71.2 bits (173), Expect = 1e-12
Identities = 87/279 (31%), Positives = 105/279 (37%), Gaps = 46/279 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP---MMGPHGQPFMSPRFPGG-PRPT---- 159
PG+ G F G PG Q P P +P + GP G P P+ P G P PT
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP--GPQGPPGRPGPTGFQG 1270
Query: 160 LRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMR 219
L P PP GLPG+ + + +P G P + G PP + G R
Sbjct: 1271 LPGPEGPP-GLPGNGGIK--GEKGNPGQPGLPGLPGLKGDQGPPGLQGNPG--------R 1319
Query: 220 PPPNSLAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS 278
P N + G PGLP + PG++GP P S+ P G PG GPPG P +P
Sbjct: 1320 PGLNGMKGDPGLPGVPGFPGMKGPSGVPG-------SAGP---EGEPGLIGPPGPPGLPG 1369
Query: 279 PGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD 336
P S I G G+ PGP+GP P G G D
Sbjct: 1370 P------SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFD 1423
Query: 337 GL--PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G K P GL PGT DG G P P
Sbjct: 1424 GAGGRKGDP----GLPGQPGTRGLDGPPGPDGLQGPPGP 1458
Score = 69.3 bits (168), Expect = 5e-12
Identities = 92/316 (29%), Positives = 113/316 (35%), Gaps = 60/316 (18%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPG--GP 156
P P PG G A +G PG +P P P G G+P FPG G
Sbjct: 502 PGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP--GSKGEPGDILTFPGMKGD 559
Query: 157 RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216
+ L P P GLPG LPG +P G P + GP P G+ G
Sbjct: 560 KGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFKGE----- 601
Query: 217 GMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYSSSSPGSY 261
R PP + PGLP N+GP G++G +P IP PG
Sbjct: 602 --RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT 658
Query: 262 TGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG-PGPEGPM 315
PG G PG P + PGD + + I G P +G PGP GP
Sbjct: 659 ITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGLPGPPGPK 715
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDDGEMAAAG 366
P G+ G ++G PK PG A+ G PG P G + G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 367 TFLHPFPSESYSPGMT 382
FP PG T
Sbjct: 776 D--RGFPGPPGPPGRT 789
Score = 68.2 bits (165), Expect = 1e-11
Identities = 88/299 (29%), Positives = 106/299 (35%), Gaps = 53/299 (17%)
Query: 97 AAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPF-MSPR 151
A P P PG A G F GPPG P +GP+GQP M P
Sbjct: 754 ALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP- 812
Query: 152 FPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 211
PG P ++ P PP G+PG P+ + P +G P G + PP S G
Sbjct: 813 -PGLPGIGVQGPPGPP-GIPG--PIGQPGLHGIPGEKGDPGPPG-LDVPGPPGERGSPGI 867
Query: 212 QSYGGGMRPP-----PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPG 266
G + PP P G P G+ GP P IP S PG G G
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG-LKGDDG 926
Query: 267 GGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHV 326
G PG P P G+ G P PGP GP M+P ++
Sbjct: 927 LQGQPGLP-------------------GPTGE-KGSKGEPGLPGPPGP------MDP-NL 959
Query: 327 NGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
GS G GLP S P GL PG P G+ G P +PG+
Sbjct: 960 LGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGP-----PGPKGNPGL 1013
Score = 67.8 bits (164), Expect = 2e-11
Identities = 79/275 (28%), Positives = 97/275 (35%), Gaps = 44/275 (16%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQP-FMSPRFP 153
P PV G PG GPPG + P P G GQP F +P P
Sbjct: 1148 PGPVGGGGHPGQ------------PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP 1195
Query: 154 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 213
G P + + G+PG+ P LPG + P G P + GP P G A GP+
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGN-PGLPGP-KGEPGFHGFPGVQGPPGPPGSP-GPALEGPKG 1252
Query: 214 YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG-----SYTGPPGGG 268
G PP PG PG GP P I +PG G G
Sbjct: 1253 NPGPQGPP----GRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQ 1308
Query: 269 GPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVN 327
GPPG P PG +N + G P PG +GP + P
Sbjct: 1309 GPPGLQGNPGRPG------------LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1356
Query: 328 GSLGSGDMDGLPKSSPGA--VAGLSNAPGTPRDDG 360
G +G GLP S + + G + PG P G
Sbjct: 1357 GLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPG 1391
Score = 67.4 bits (163), Expect = 2e-11
Identities = 79/264 (29%), Positives = 98/264 (37%), Gaps = 41/264 (15%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPR-------FPGGPRPTLRMPSQPPAGLPG--S 173
+G PG + P P P GP G P PR PG P P + P GLPG
Sbjct: 50 RGFPGLEGHPGLPGFP--GPEGPP--GPRGQKGDDGIPGPPGPK---GIRGPPGLPGFPG 102
Query: 174 QPLLPG--AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLA 226
P LPG + +P QG P G P G Q G GM+ P S+
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSII 162
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTN 284
LP PG GP P +P + PG GPPG GPPG P +P P +
Sbjct: 163 MSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 285 SSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSP 343
P G+ G PGP G ++ + ++ GD GLP P
Sbjct: 220 -----LNFQGPKGE-KGEQGLQGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGP 268
Query: 344 GAVAGLSNAPGTP-RDDGEMAAAG 366
G+ PG P + GE G
Sbjct: 269 PGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 66.6 bits (161), Expect = 4e-11
Identities = 77/256 (30%), Positives = 90/256 (35%), Gaps = 29/256 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPP 167
PG G QGPPG P P A +MGP G P FPG R P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGL---PGPPGAAVMGPPGPP----GFPG-ERGQKGDEGPPG 415
Query: 168 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG-MASVGPQSYGGGMRPPPNSLA 226
+PG P ++ P A G P GP PP + GP PP S
Sbjct: 416 ISIPG-----PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPG-------PPGS-- 461
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP-SPGDSTNS 285
PG + GV+G N I S P G PG GPPG+ P G+ +
Sbjct: 462 -PGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQA 520
Query: 286 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 345
+ I G FP G G + M+ G LGS GLP PG
Sbjct: 521 GATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPGLP-GLPG- 576
Query: 346 VAGLSNAPGTPRDDGE 361
G PG P GE
Sbjct: 577 TPGQDGLPGLPGPKGE 592
Score = 65.5 bits (158), Expect = 8e-11
Identities = 86/308 (27%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
PG GS+ GP G+ P P + GP G P P P GP + P
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP--GPIGPPGPPGLMGPPG-- 207
Query: 167 PAGLPGSQPLL------PGAMEPSPRAQGHPSMGGPMQRVTPPRGMA-SVGPQSYGGGMR 219
P GLPG + + P + QG P G + P + G Q G
Sbjct: 208 PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRG 267
Query: 220 P--PPNSLAGPGLPAMNMG-------PGVRGPWASPSGNSIPYSSSSPG--SYTGPP--- 265
P PP PG P G PG RG N P PG Y G P
Sbjct: 268 PPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRD 327
Query: 266 ------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG---- 313
G GPPG P ++P PG E + + G FP GP G
Sbjct: 328 GEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Query: 314 -PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
A M P G G +G P S GL PG P G AG + P
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPP- 446
Query: 373 PSESYSPG 380
E PG
Sbjct: 447 SDEICEPG 454
Score = 65.1 bits (157), Expect = 1e-10
Identities = 86/300 (28%), Positives = 104/300 (34%), Gaps = 71/300 (23%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM-------GPHGQPFMSPR-----FPGGP 156
GD G +GPPG P P P M GP G P + FPG P
Sbjct: 78 GDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSP 137
Query: 157 R-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM-ASVG 210
P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+ +G
Sbjct: 138 GFPGLQGPPGPP-GIPGMKG-EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIG 195
Query: 211 PQSYGGGMRPPPNSLAGPGLPAM--NMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 262
P G M PP PGLP NMG +GP + PG +
Sbjct: 196 PPGPPGLMGPP----GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPI 251
Query: 263 ---------GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG 313
G PG GPPG P + P P G G PG G
Sbjct: 252 DVEFQKGDQGLPGDRGPPGPPGIRGP-------------PGPPGGEKGEKGEQGEPGKRG 298
Query: 314 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
+G G + GLP PG PG P DGE G P P
Sbjct: 299 KPGK---------DGENGQPGIPGLP-GDPG-------YPGEPGRDGEKGQKGDTGPPGP 341
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/158 (33%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 123 QGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPG--SQPLLPG 179
QGPPG Q +P P M G G P + P FPG P+ S P G PG P PG
Sbjct: 1308 QGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPG 1366
Query: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 239
PS ++ GP P GPQ G + P PG P N PG
Sbjct: 1367 LPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQ----GPQGLPGPTGPPGDPGRNGLPGF 1422
Query: 240 RGPWASPSGNSIPYSSSSPGSYTGPPGGGG---PPGTP 274
G +P + G GPPG G PPG P
Sbjct: 1423 DGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPP 1459
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 277 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 332
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 333 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 82.0 bits (201), Expect = 8e-16
Identities = 90/294 (30%), Positives = 107/294 (36%), Gaps = 49/294 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-------MMGPHGQPFMSPRFPGGP-RPT 159
PG G G GPPG + P P P +G G P P FPG P
Sbjct: 695 PGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG-PPGFPGPKGEPG 752
Query: 160 LRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQS 213
+P P P GLPG + GA+ P +G P GP R + P+G VGP
Sbjct: 753 FALPGPPGPPGLPGFK----GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNG 805
Query: 214 YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGG 269
G M PP L G G+ PG+ GP P + IP PG GPPG G
Sbjct: 806 QPGPMGPP--GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERG 863
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PG P P P + P G G+A PG +G M M P
Sbjct: 864 SPGIPGAPGP-------------IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Query: 328 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
G G + GL GL PG P GE + G P P P +
Sbjct: 911 GIPGRSGVPGLKGDD-----GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 78.2 bits (191), Expect = 1e-14
Identities = 89/297 (29%), Positives = 111/297 (37%), Gaps = 57/297 (19%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFF-----------QGPPGSQPSPHNPNAPMM----GP 142
AP P+ +PG AG A+GF GPPG P P + G
Sbjct: 870 APGPIGPPGSPGLPGKAG--ASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Query: 143 HGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP----SPRAQGHPSMGGPMQ 198
GQP G P PT S+ GLPG PG M+P S +G P + G +
Sbjct: 928 QGQP-------GLPGPTGEKGSKGEPGLPGP----PGPMDPNLLGSKGEKGEPGLPG-IP 975
Query: 199 RVTPPRGMASV----GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIP 252
V+ P+G + G G G+ PP PGLP PG+ GP G
Sbjct: 976 GVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGD 1031
Query: 253 YSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 311
P GPPG G PG P P PG + + G P PGP
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGLPGP 1081
Query: 312 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAG 366
+G + GS+G + GLP +PGA GL PGTP G +G
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLP-GTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Score = 74.7 bits (182), Expect = 1e-13
Identities = 82/287 (28%), Positives = 99/287 (34%), Gaps = 45/287 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM----GPHGQPFMSPRFPGGPRPTLRMP 163
PG G + G PG + S +P P + G GQP + P FPG P P
Sbjct: 1076 PGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPPGPKG 1134
Query: 164 SQPPAGLPGSQPLLPGAMEPSP-RAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPP 222
P G PG LPG EP P GHP GP P GP G P
Sbjct: 1135 ISGPPGNPG----LPG--EPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 223 NSLAGP-------------GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGP----- 264
GP GLP + PG+ GP P + P PG P
Sbjct: 1189 FGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALE 1248
Query: 265 -----PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 319
PG GPPG P +P P N G G P PG G
Sbjct: 1249 GPKGNPGPQGPPGRPGLPGPEGPPGLPGN--------GGIKGEKGNPGQPGLPGLPGLKG 1300
Query: 320 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
P + G+ G ++G+ K PG + G+ PG G +AG
Sbjct: 1301 DQGPPGLQGNPGRPGLNGM-KGDPG-LPGVPGFPGMKGPSGVPGSAG 1345
Score = 74.3 bits (181), Expect = 2e-13
Identities = 86/274 (31%), Positives = 104/274 (37%), Gaps = 42/274 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP---MMGPHGQPFMSPRFPGGPRPTLRMPS 164
PG+ G F G PG Q P P +P + GP G P P+ P G RP L P
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP--GPQGPPG-RPGLPGPE 1269
Query: 165 QPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNS 224
PP GLPG+ + + +P G P + G PP + G RP N
Sbjct: 1270 GPP-GLPGNGGIK--GEKGNPGQPGLPGLPGLKGDQGPPGLQGNPG--------RPGLNG 1318
Query: 225 LAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 283
+ G PGLP + PG++GP P S+ P G PG GPPG P +P P
Sbjct: 1319 MKGDPGLPGVPGFPGMKGPSGVPG-------SAGP---EGEPGLIGPPGPPGLPGP---- 1364
Query: 284 NSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--P 339
S I G G+ PGP+GP P G G DG
Sbjct: 1365 --SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGR 1422
Query: 340 KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
K P GL PGT DG G P P
Sbjct: 1423 KGDP----GLPGQPGTRGLDGPPGPDGLQGPPGP 1452
Score = 73.2 bits (178), Expect = 4e-13
Identities = 80/271 (29%), Positives = 104/271 (38%), Gaps = 31/271 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHG-------QPFMSPRFPGGPRPT 159
PGD G GPPG + +P P P ++GP G F P+ GP
Sbjct: 987 PGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Query: 160 LRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-- 216
+P QP + GLPG + +P + G P + GP P + G + G
Sbjct: 1047 SGVPGQPGSPGLPGQKG---DKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDP 1103
Query: 217 ---GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGT 273
G+ P + PGLP PG GP P G S P + GP GGGG PG
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGF---PGTPGP-PGPKGISGPPGNPGLPGEPGPVGGGGHPGQ 1159
Query: 274 PIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 331
P PG+ ++ I P GQ G+ F PGP G + G G
Sbjct: 1160 P--GPPGEKGKPGQD--GIPGPAGQKGEPGQPGFG-NPGPPGLPGLSGQKGDGGLPGIPG 1214
Query: 332 SGDMDGLPKSSPG--AVAGLSNAPGTPRDDG 360
+ + G PK PG G+ PG P G
Sbjct: 1215 NPGLPG-PKGEPGFHGFPGVQGPPGPPGSPG 1244
Score = 69.3 bits (168), Expect = 5e-12
Identities = 92/316 (29%), Positives = 113/316 (35%), Gaps = 60/316 (18%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPG--GP 156
P P PG G A +G PG +P P P G G+P FPG G
Sbjct: 502 PGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP--GSKGEPGDILTFPGMKGD 559
Query: 157 RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216
+ L P P GLPG LPG +P G P + GP P G+ G
Sbjct: 560 KGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFKGE----- 601
Query: 217 GMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYSSSSPGSY 261
R PP + PGLP N+GP G++G +P IP PG
Sbjct: 602 --RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT 658
Query: 262 TGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG-PGPEGPM 315
PG G PG P + PGD + + I G P +G PGP GP
Sbjct: 659 ITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGLPGPPGPK 715
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDDGEMAAAG 366
P G+ G ++G PK PG A+ G PG P G + G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 367 TFLHPFPSESYSPGMT 382
FP PG T
Sbjct: 776 D--RGFPGPPGPPGRT 789
Score = 68.6 bits (166), Expect = 9e-12
Identities = 78/271 (28%), Positives = 100/271 (36%), Gaps = 42/271 (15%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQP-FMSPRFP 153
P PV G PG GPPG + P P G GQP F +P P
Sbjct: 1148 PGPVGGGGHPGQ------------PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP 1195
Query: 154 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 213
G P + + G+PG+ P LPG + P G P + GP P G A GP+
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGN-PGLPGP-KGEPGFHGFPGVQGPPGPPGSP-GPALEGPKG 1252
Query: 214 YGGGMRPPPN-SLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPP 271
G PP L GP G P + G++G +P +P G GPPG G P
Sbjct: 1253 NPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGD-QGPPGLQGNP 1311
Query: 272 GTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 331
G P +N + G P PG +GP + P G +G
Sbjct: 1312 GRP-----------------GLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIG 1354
Query: 332 SGDMDGLPKSSPGA--VAGLSNAPGTPRDDG 360
GLP S + + G + PG P G
Sbjct: 1355 PPGPPGLPGPSGQSIIIKGDAGPPGIPGQPG 1385
Score = 68.2 bits (165), Expect = 1e-11
Identities = 88/299 (29%), Positives = 106/299 (35%), Gaps = 53/299 (17%)
Query: 97 AAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPF-MSPR 151
A P P PG A G F GPPG P +GP+GQP M P
Sbjct: 754 ALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP- 812
Query: 152 FPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 211
PG P ++ P PP G+PG P+ + P +G P G + PP S G
Sbjct: 813 -PGLPGIGVQGPPGPP-GIPG--PIGQPGLHGIPGEKGDPGPPG-LDVPGPPGERGSPGI 867
Query: 212 QSYGGGMRPP-----PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPG 266
G + PP P G P G+ GP P IP S PG G G
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG-LKGDDG 926
Query: 267 GGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHV 326
G PG P P G+ G P PGP GP M+P ++
Sbjct: 927 LQGQPGLP-------------------GPTGE-KGSKGEPGLPGPPGP------MDP-NL 959
Query: 327 NGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
GS G GLP S P GL PG P G+ G P +PG+
Sbjct: 960 LGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGP-----PGPKGNPGL 1013
Score = 67.4 bits (163), Expect = 2e-11
Identities = 79/264 (29%), Positives = 98/264 (37%), Gaps = 41/264 (15%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPR-------FPGGPRPTLRMPSQPPAGLPG--S 173
+G PG + P P P GP G P PR PG P P + P GLPG
Sbjct: 50 RGFPGLEGHPGLPGFP--GPEGPP--GPRGQKGDDGIPGPPGPK---GIRGPPGLPGFPG 102
Query: 174 QPLLPG--AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLA 226
P LPG + +P QG P G P G Q G GM+ P S+
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSII 162
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTN 284
LP PG GP P +P + PG GPPG GPPG P +P P +
Sbjct: 163 MSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 285 SSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSP 343
P G+ G PGP G ++ + ++ GD GLP P
Sbjct: 220 -----LNFQGPKGE-KGEQGLQGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGP 268
Query: 344 GAVAGLSNAPGTP-RDDGEMAAAG 366
G+ PG P + GE G
Sbjct: 269 PGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 66.6 bits (161), Expect = 4e-11
Identities = 77/256 (30%), Positives = 90/256 (35%), Gaps = 29/256 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPP 167
PG G QGPPG P P A +MGP G P FPG R P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGL---PGPPGAAVMGPPGPP----GFPG-ERGQKGDEGPPG 415
Query: 168 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG-MASVGPQSYGGGMRPPPNSLA 226
+PG P ++ P A G P GP PP + GP PP S
Sbjct: 416 ISIPG-----PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPG-------PPGS-- 461
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP-SPGDSTNS 285
PG + GV+G N I S P G PG GPPG+ P G+ +
Sbjct: 462 -PGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQA 520
Query: 286 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 345
+ I G FP G G + M+ G LGS GLP PG
Sbjct: 521 GATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPGLP-GLPG- 576
Query: 346 VAGLSNAPGTPRDDGE 361
G PG P GE
Sbjct: 577 TPGQDGLPGLPGPKGE 592
Score = 65.5 bits (158), Expect = 8e-11
Identities = 86/308 (27%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
PG GS+ GP G+ P P + GP G P P P GP + P
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP--GPIGPPGPPGLMGPPG-- 207
Query: 167 PAGLPGSQPLL------PGAMEPSPRAQGHPSMGGPMQRVTPPRGMA-SVGPQSYGGGMR 219
P GLPG + + P + QG P G + P + G Q G
Sbjct: 208 PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRG 267
Query: 220 P--PPNSLAGPGLPAMNMG-------PGVRGPWASPSGNSIPYSSSSPG--SYTGPP--- 265
P PP PG P G PG RG N P PG Y G P
Sbjct: 268 PPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRD 327
Query: 266 ------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG---- 313
G GPPG P ++P PG E + + G FP GP G
Sbjct: 328 GEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Query: 314 -PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
A M P G G +G P S GL PG P G AG + P
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPP- 446
Query: 373 PSESYSPG 380
E PG
Sbjct: 447 SDEICEPG 454
Score = 65.1 bits (157), Expect = 1e-10
Identities = 86/300 (28%), Positives = 104/300 (34%), Gaps = 71/300 (23%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM-------GPHGQPFMSPR-----FPGGP 156
GD G +GPPG P P P M GP G P + FPG P
Sbjct: 78 GDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSP 137
Query: 157 R-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM-ASVG 210
P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+ +G
Sbjct: 138 GFPGLQGPPGPP-GIPGMKG-EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIG 195
Query: 211 PQSYGGGMRPPPNSLAGPGLPAM--NMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 262
P G M PP PGLP NMG +GP + PG +
Sbjct: 196 PPGPPGLMGPP----GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPI 251
Query: 263 ---------GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG 313
G PG GPPG P + P P G G PG G
Sbjct: 252 DVEFQKGDQGLPGDRGPPGPPGIRGP-------------PGPPGGEKGEKGEQGEPGKRG 298
Query: 314 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
+G G + GLP PG PG P DGE G P P
Sbjct: 299 KPGK---------DGENGQPGIPGLP-GDPG-------YPGEPGRDGEKGQKGDTGPPGP 341
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/158 (33%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 123 QGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPG--SQPLLPG 179
QGPPG Q +P P M G G P + P FPG P+ S P G PG P PG
Sbjct: 1302 QGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPG 1360
Query: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 239
PS ++ GP P GPQ G + P PG P N PG
Sbjct: 1361 LPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQ----GPQGLPGPTGPPGDPGRNGLPGF 1416
Query: 240 RGPWASPSGNSIPYSSSSPGSYTGPPGGGG---PPGTP 274
G +P + G GPPG G PPG P
Sbjct: 1417 DGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPP 1453
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 277 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 332
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 333 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 82.0 bits (201), Expect = 8e-16
Identities = 90/294 (30%), Positives = 107/294 (36%), Gaps = 49/294 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-------MMGPHGQPFMSPRFPGGP-RPT 159
PG G G GPPG + P P P +G G P P FPG P
Sbjct: 695 PGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG-PPGFPGPKGEPG 752
Query: 160 LRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQS 213
+P P P GLPG + GA+ P +G P GP R + P+G VGP
Sbjct: 753 FALPGPPGPPGLPGFK----GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNG 805
Query: 214 YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGG 269
G M PP L G G+ PG+ GP P + IP PG GPPG G
Sbjct: 806 QPGPMGPP--GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERG 863
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PG P P P + P G G+A PG +G M M P
Sbjct: 864 SPGIPGAPGP-------------IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Query: 328 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
G G + GL GL PG P GE + G P P P +
Sbjct: 911 GIPGRSGVPGLKGDD-----GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 78.2 bits (191), Expect = 1e-14
Identities = 89/297 (29%), Positives = 111/297 (37%), Gaps = 57/297 (19%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFF-----------QGPPGSQPSPHNPNAPMM----GP 142
AP P+ +PG AG A+GF GPPG P P + G
Sbjct: 870 APGPIGPPGSPGLPGKAG--ASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Query: 143 HGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP----SPRAQGHPSMGGPMQ 198
GQP G P PT S+ GLPG PG M+P S +G P + G +
Sbjct: 928 QGQP-------GLPGPTGEKGSKGEPGLPGP----PGPMDPNLLGSKGEKGEPGLPG-IP 975
Query: 199 RVTPPRGMASV----GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIP 252
V+ P+G + G G G+ PP PGLP PG+ GP G
Sbjct: 976 GVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGD 1031
Query: 253 YSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 311
P GPPG G PG P P PG + + G P PGP
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGLPGP 1081
Query: 312 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAG 366
+G + GS+G + GLP +PGA GL PGTP G +G
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLP-GTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Score = 73.9 bits (180), Expect = 2e-13
Identities = 91/326 (27%), Positives = 117/326 (35%), Gaps = 74/326 (22%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNA-PMMGPHGQPFMSPRFPG--GPRPTLRMPS 164
PG T GS GPPG P +PN G G+P + P PG GP+ +P
Sbjct: 934 PGPTGEKGSKGEPGLPGPPG----PMDPNLLGSKGEKGEPGL-PGIPGVSGPKGYQGLPG 988
Query: 165 QPPAGLPG--SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRP 220
P G PG QP LPG P +G+P + G + PP ++G + G G+
Sbjct: 989 DP--GQPGLSGQPGLPGP----PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEG 1042
Query: 221 PPN-------------------------------SLAGP----GLPAMNMGPGVRGPWAS 245
PP L GP GLP PG++G
Sbjct: 1043 PPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGD 1102
Query: 246 PSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSEN--MYTIMNPIGQGAGRA 303
P +P +PG+ G PG G PGTP P P + N + P+G G G
Sbjct: 1103 P---GLPGLPGTPGA-KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVG-GGGHP 1157
Query: 304 NFPLGPGPEGPMAAMSAMEPHHVNG-----SLGSGDMDGLP----KSSPGAVAGLSNAPG 354
P PG +G P G G+ GLP + G + G+ PG
Sbjct: 1158 GQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG 1217
Query: 355 TPRDDGEMAAAGTFLHPFPSESYSPG 380
P GE H FP PG
Sbjct: 1218 LPGPKGEPG-----FHGFPGVQGPPG 1238
Score = 70.1 bits (170), Expect = 3e-12
Identities = 91/285 (31%), Positives = 104/285 (36%), Gaps = 43/285 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMS--PRFPGGPRPTLRMPS- 164
PG +G G G PG+ P P G HG P + P PG P P L P
Sbjct: 1195 PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP--GFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Query: 165 ----QPPAGLPGSQPLLPGAMEPSPRAQGHPSM----GGPMQRVTP--PRGMASVGPQSY 214
Q P G PG Q L PG P P G+ + G P Q P P GP
Sbjct: 1253 NPGPQGPPGRPGFQGL-PGPEGP-PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL 1310
Query: 215 GGGM-RPPPNSLAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 272
G RP N + G PGLP + PG++GP P S+ P G PG GPPG
Sbjct: 1311 QGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG-------SAGP---EGEPGLIGPPG 1360
Query: 273 TPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSL 330
P +P P S I G G+ PGP+GP P G
Sbjct: 1361 PPGLPGP------SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRN 1414
Query: 331 GSGDMDGL--PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G DG K P GL PGT DG G P P
Sbjct: 1415 GLPGFDGAGGRKGDP----GLPGQPGTRGLDGPPGPDGLQGPPGP 1455
Score = 69.3 bits (168), Expect = 5e-12
Identities = 92/316 (29%), Positives = 113/316 (35%), Gaps = 60/316 (18%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPG--GP 156
P P PG G A +G PG +P P P G G+P FPG G
Sbjct: 502 PGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP--GSKGEPGDILTFPGMKGD 559
Query: 157 RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216
+ L P P GLPG LPG +P G P + GP P G+ G
Sbjct: 560 KGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFKGE----- 601
Query: 217 GMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYSSSSPGSY 261
R PP + PGLP N+GP G++G +P IP PG
Sbjct: 602 --RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT 658
Query: 262 TGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG-PGPEGPM 315
PG G PG P + PGD + + I G P +G PGP GP
Sbjct: 659 ITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGLPGPPGPK 715
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDDGEMAAAG 366
P G+ G ++G PK PG A+ G PG P G + G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 367 TFLHPFPSESYSPGMT 382
FP PG T
Sbjct: 776 D--RGFPGPPGPPGRT 789
Score = 68.6 bits (166), Expect = 9e-12
Identities = 89/302 (29%), Positives = 110/302 (36%), Gaps = 63/302 (20%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM----GPHGQPFMSPRFPGGPRPTLRMP 163
PG G + G PG + S +P P + G GQP + P FPG P P
Sbjct: 1076 PGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPPGPKG 1134
Query: 164 SQPPAGLPGSQPLLPGAMEPSP-RAQGHPSMGGPM----------------QRVTP---- 202
P G PG LPG EP P GHP GP Q+ P
Sbjct: 1135 ISGPPGNPG----LPG--EPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 203 -----PRGMASVGPQSYGGGMRPPPNS--LAGP-GLPAMNMGPGVRGP----------WA 244
P G+ + Q GG+ P + L GP G P + PGV+GP
Sbjct: 1189 FGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALE 1248
Query: 245 SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRAN 304
P GN P + G PG GPPG PG+ E NP GQ G
Sbjct: 1249 GPKGNPGPQGPPGRPGFQGLPGPEGPPGL-----PGNGGIKGEK----GNP-GQ-PGLPG 1297
Query: 305 FPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAA 364
P G +GP +NG G + G+P PG + G S PG+ +GE
Sbjct: 1298 LPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVP-GFPG-MKGPSGVPGSAGPEGEPGL 1355
Query: 365 AG 366
G
Sbjct: 1356 IG 1357
Score = 68.6 bits (166), Expect = 9e-12
Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 47/275 (17%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQP-FMSPRFP 153
P PV G PG GPPG + P P G GQP F +P P
Sbjct: 1148 PGPVGGGGHPGQ------------PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP 1195
Query: 154 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 213
G P + + G+PG+ P LPG + P G P + G PP S GP
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGN-PGLPGP-KGEPGFHGFPGVQG------PPGPPGSPGPAL 1247
Query: 214 YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG-----SYTGPPGGG 268
G P P PG P PG GP P I +PG G G
Sbjct: 1248 EGPKGNPGPQ--GPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQ 1305
Query: 269 GPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVN 327
GPPG P PG +N + G P PG +GP + P
Sbjct: 1306 GPPGLQGNPGRPG------------LNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1353
Query: 328 GSLGSGDMDGLPKSSPGA--VAGLSNAPGTPRDDG 360
G +G GLP S + + G + PG P G
Sbjct: 1354 GLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPG 1388
Score = 68.2 bits (165), Expect = 1e-11
Identities = 88/299 (29%), Positives = 106/299 (35%), Gaps = 53/299 (17%)
Query: 97 AAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPF-MSPR 151
A P P PG A G F GPPG P +GP+GQP M P
Sbjct: 754 ALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP- 812
Query: 152 FPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 211
PG P ++ P PP G+PG P+ + P +G P G + PP S G
Sbjct: 813 -PGLPGIGVQGPPGPP-GIPG--PIGQPGLHGIPGEKGDPGPPG-LDVPGPPGERGSPGI 867
Query: 212 QSYGGGMRPP-----PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPG 266
G + PP P G P G+ GP P IP S PG G G
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG-LKGDDG 926
Query: 267 GGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHV 326
G PG P P G+ G P PGP GP M+P ++
Sbjct: 927 LQGQPGLP-------------------GPTGE-KGSKGEPGLPGPPGP------MDP-NL 959
Query: 327 NGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
GS G GLP S P GL PG P G+ G P +PG+
Sbjct: 960 LGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGP-----PGPKGNPGL 1013
Score = 67.4 bits (163), Expect = 2e-11
Identities = 79/264 (29%), Positives = 98/264 (37%), Gaps = 41/264 (15%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPR-------FPGGPRPTLRMPSQPPAGLPG--S 173
+G PG + P P P GP G P PR PG P P + P GLPG
Sbjct: 50 RGFPGLEGHPGLPGFP--GPEGPP--GPRGQKGDDGIPGPPGPK---GIRGPPGLPGFPG 102
Query: 174 QPLLPG--AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLA 226
P LPG + +P QG P G P G Q G GM+ P S+
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSII 162
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTN 284
LP PG GP P +P + PG GPPG GPPG P +P P +
Sbjct: 163 MSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 285 SSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSP 343
P G+ G PGP G ++ + ++ GD GLP P
Sbjct: 220 -----LNFQGPKGE-KGEQGLQGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGP 268
Query: 344 GAVAGLSNAPGTP-RDDGEMAAAG 366
G+ PG P + GE G
Sbjct: 269 PGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 66.6 bits (161), Expect = 4e-11
Identities = 77/256 (30%), Positives = 90/256 (35%), Gaps = 29/256 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPP 167
PG G QGPPG P P A +MGP G P FPG R P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGL---PGPPGAAVMGPPGPP----GFPG-ERGQKGDEGPPG 415
Query: 168 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG-MASVGPQSYGGGMRPPPNSLA 226
+PG P ++ P A G P GP PP + GP PP S
Sbjct: 416 ISIPG-----PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPG-------PPGS-- 461
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP-SPGDSTNS 285
PG + GV+G N I S P G PG GPPG+ P G+ +
Sbjct: 462 -PGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQA 520
Query: 286 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 345
+ I G FP G G + M+ G LGS GLP PG
Sbjct: 521 GATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPGLP-GLPG- 576
Query: 346 VAGLSNAPGTPRDDGE 361
G PG P GE
Sbjct: 577 TPGQDGLPGLPGPKGE 592
Score = 65.5 bits (158), Expect = 8e-11
Identities = 86/308 (27%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
PG GS+ GP G+ P P + GP G P P P GP + P
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP--GPIGPPGPPGLMGPPG-- 207
Query: 167 PAGLPGSQPLL------PGAMEPSPRAQGHPSMGGPMQRVTPPRGMA-SVGPQSYGGGMR 219
P GLPG + + P + QG P G + P + G Q G
Sbjct: 208 PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRG 267
Query: 220 P--PPNSLAGPGLPAMNMG-------PGVRGPWASPSGNSIPYSSSSPG--SYTGPP--- 265
P PP PG P G PG RG N P PG Y G P
Sbjct: 268 PPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRD 327
Query: 266 ------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG---- 313
G GPPG P ++P PG E + + G FP GP G
Sbjct: 328 GEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Query: 314 -PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
A M P G G +G P S GL PG P G AG + P
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPP- 446
Query: 373 PSESYSPG 380
E PG
Sbjct: 447 SDEICEPG 454
Score = 65.1 bits (157), Expect = 1e-10
Identities = 86/300 (28%), Positives = 104/300 (34%), Gaps = 71/300 (23%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM-------GPHGQPFMSPR-----FPGGP 156
GD G +GPPG P P P M GP G P + FPG P
Sbjct: 78 GDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSP 137
Query: 157 R-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM-ASVG 210
P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+ +G
Sbjct: 138 GFPGLQGPPGPP-GIPGMKG-EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIG 195
Query: 211 PQSYGGGMRPPPNSLAGPGLPAM--NMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 262
P G M PP PGLP NMG +GP + PG +
Sbjct: 196 PPGPPGLMGPP----GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPI 251
Query: 263 ---------GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG 313
G PG GPPG P + P P G G PG G
Sbjct: 252 DVEFQKGDQGLPGDRGPPGPPGIRGP-------------PGPPGGEKGEKGEQGEPGKRG 298
Query: 314 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
+G G + GLP PG PG P DGE G P P
Sbjct: 299 KPGK---------DGENGQPGIPGLP-GDPG-------YPGEPGRDGEKGQKGDTGPPGP 341
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/158 (33%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 123 QGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPG--SQPLLPG 179
QGPPG Q +P P M G G P + P FPG P+ S P G PG P PG
Sbjct: 1305 QGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPG 1363
Query: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 239
PS ++ GP P GPQ G + P PG P N PG
Sbjct: 1364 LPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQ----GPQGLPGPTGPPGDPGRNGLPGF 1419
Query: 240 RGPWASPSGNSIPYSSSSPGSYTGPPGGGG---PPGTP 274
G +P + G GPPG G PPG P
Sbjct: 1420 DGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPP 1456
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 277 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 332
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 333 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 81.3 bits (199), Expect = 1e-15
Identities = 98/338 (28%), Positives = 121/338 (35%), Gaps = 67/338 (19%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQP-SPHNPNAPMMGPHGQPFM----------SPRFPGGP 156
PG+ AGS A F G PG H + + GP G+ P GP
Sbjct: 275 PGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGP 334
Query: 157 RPTLRMPSQP----PAGLPGSQ-----PLLPGAMEPS--PRAQGHPSMGGPMQRVTPPRG 205
MP + P G PG + P PG M P P + G P G P
Sbjct: 335 LGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGA 394
Query: 206 MASVGPQSYGGGMRPPPNSLAGPGLPAM---NMGPGVRGPWASPSGNSIPYSSSSPGS-- 260
GPQ G PP + PGLP + PG +GP SP + P S+ PGS
Sbjct: 395 RGPEGPQGQRGETGPP-GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPG 453
Query: 261 ---YTGPPGGGGPPGTPIMPS-PGDSTNSSE-NMYTIMNPIG------------------ 297
TGP G G PG P +P G++ E + I PIG
Sbjct: 454 PQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVG 513
Query: 298 -------QGA-GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVA 347
+GA G FP G GP A P +G GS G P PGA
Sbjct: 514 PPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGA-R 572
Query: 348 GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 385
GL+ PG +G++ G P E PG S+
Sbjct: 573 GLTGNPGVQGPEGKLGPLGA-----PGEDGRPGPPGSI 605
Score = 72.4 bits (176), Expect = 6e-13
Identities = 82/275 (29%), Positives = 95/275 (34%), Gaps = 48/275 (17%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA--- 180
GPPGSQ P GP G+P PR P G +P QP A P P PG
Sbjct: 135 GPPGSQ-GPRGER----GPKGRP--GPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGL 187
Query: 181 -------MEPSPRAQGHPSMGGPMQ-RVTP--PRGMASVGPQSYGGGMRPPPNSLAGPGL 230
M G S G M V P PRG + Q G G PP PG
Sbjct: 188 SRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPG- 246
Query: 231 PAMNMGP----GVRGPWASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMPSPGDSTN 284
MGP G GP P + P + +PG + G PG G PG P +P
Sbjct: 247 ---PMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLP----GLK 299
Query: 285 SSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----- 339
+ P G+ G GP GPM AM + P + G G G P
Sbjct: 300 GHRGHKGLEGPKGE-VGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGA 358
Query: 340 --------KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
P + G S PG P GE G
Sbjct: 359 HGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTG 393
Score = 72.0 bits (175), Expect = 8e-13
Identities = 96/329 (29%), Positives = 107/329 (32%), Gaps = 46/329 (13%)
Query: 76 DRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQ--PSPH 133
DR E E A D A P P+ G T G GPPGS+ P
Sbjct: 778 DRGGIGEKGAEGTAGND-GARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSR 836
Query: 134 NPNAPM--------MGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ--------PLL 177
N P GP GQP + PG P S P GL GS P L
Sbjct: 837 GENGPTGAVGFAGPQGPDGQPGVKGE-PGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895
Query: 178 PG--AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAM 233
G + P A G P G RV PP + GP G G PP PG
Sbjct: 896 KGGRGTQGPPGATGFPGSAG---RVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGR 952
Query: 234 NMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG-TPIMPSPGDSTNSSENMYTI 292
G GP P P PG GPPG G G I+ PG M +
Sbjct: 953 VGDRGPAGPPGGPGDKGDPGEDGQPGP-DGPPGPAGTTGQRGIVGMPGQ--RGERGMPGL 1009
Query: 293 MNPIG-------QGAGRANFPLGP-GPEGPMAAMSAMEPHHVNGSLGSGDMDGL------ 338
P G GA P GP GP G + P G+ G+ DG
Sbjct: 1010 PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGD 1069
Query: 339 -PKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
P + G APGTP G AG
Sbjct: 1070 RGDPGPAGLPGSQGAPGTPGPVGAPGDAG 1098
Score = 65.5 bits (158), Expect = 8e-11
Identities = 92/296 (31%), Positives = 108/296 (36%), Gaps = 35/296 (11%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNP----NAPMMGPHGQPF----MSPRFPGGPRPT 159
PG G + GP GS P P NA + G G P + P P GP P
Sbjct: 602 PGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP-PG 660
Query: 160 L--RMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP--PRGMASVGPQSYG 215
L Q P G G Q L PG P P +G G P + P P + +GP+
Sbjct: 661 LAGERGEQGPPGPTGFQGL-PGP--PGPPGEG----GKPGDQGVPGDPGAVGPLGPRGER 713
Query: 216 G--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGT 273
G G R P PG M G G GP SP + P + PG G PG G GT
Sbjct: 714 GNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPG-LQGMPGERGIAGT 772
Query: 274 PIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGS 332
P T N GA PLG PGP GP P + G GS
Sbjct: 773 PGPKGDRGGIGEKGAEGTAGN---DGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGS 829
Query: 333 -GDMDGLPKSSP-GAVA-----GLSNAPGTPRDDGEMAAAGTFLHPFPSE-SYSPG 380
G+ ++ P GAV G PG + GE G P P + SPG
Sbjct: 830 RGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPG 885
Score = 63.5 bits (153), Expect = 3e-10
Identities = 88/311 (28%), Positives = 107/311 (34%), Gaps = 55/311 (17%)
Query: 96 AAAPSP--VMGSMAP-GDTMAAGSMAAGFFQGPPGSQ-----------PSPHNPNAPMMG 141
A +P P + GS P G G QGPPG+ P P P G
Sbjct: 872 AGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPA-G 930
Query: 142 PHGQPFMS--PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPM-- 197
P G+P P G P R+ + PAG PG PG + P G P GP
Sbjct: 931 PLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGG----PGD-KGDPGEDGQPGPDGPPGP 985
Query: 198 QRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWAS-----PSGNSIP 252
T RG+ + Q GM PGLP PG GP + P G P
Sbjct: 986 AGTTGQRGIVGMPGQRGERGM---------PGLPGPAGTPGKVGPTGATGDKGPPGPVGP 1036
Query: 253 YSSSSPGSYTGPPGGGGPPGTP----IMPSPGDSTN-------SSENMYTIMNPIGQ--G 299
S+ P GP G G GTP + GD + S+ P+G
Sbjct: 1037 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD 1096
Query: 300 AGRANFPLGPGPEGP---MAAMSAMEPHHVNGSLGS-GDMDGLPKSSPGAVAGLSNAPGT 355
AG+ P GP GP P G G GD + GL PG
Sbjct: 1097 AGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGP 1156
Query: 356 PRDDGEMAAAG 366
P +GE +AG
Sbjct: 1157 PGPNGEQGSAG 1167
Score = 60.5 bits (145), Expect = 3e-09
Identities = 79/265 (29%), Positives = 96/265 (36%), Gaps = 29/265 (10%)
Query: 124 GPPGSQPSPHNPNAP----MMGPHG-QPFMSPRFPGGPRPTLRMPSQP-PAGLPGSQPLL 177
GP G + +P N P + GP G Q P GP+ + P +P GLPG++ L
Sbjct: 516 GPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLT 575
Query: 178 PGAMEPSPRAQGHPSMGGPMQRVTP-PRGMASVGPQSYGGGMRPPPNSLAGPGLP--AMN 234
P + P +G P + P P G + Q G+ P S PG P A N
Sbjct: 576 GNPGVQGPEGKLGP-LGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGN 634
Query: 235 MG-PGVRGP-----WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSEN 288
G PG RG PSG P + GPPG G G P P P +
Sbjct: 635 AGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGD 694
Query: 289 MYTIMNPIGQGAGRANFPLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG 344
+P G PLGP G G G G DG PK SPG
Sbjct: 695 QGVPGDPGAVG------PLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDG-PKGSPG 747
Query: 345 --AVAGLSNAPGTPRDDGEMAAAGT 367
G + PG GE AGT
Sbjct: 748 PSGTPGDTGPPGLQGMPGERGIAGT 772
Score = 50.4 bits (119), Expect = 3e-06
Identities = 55/189 (29%), Positives = 64/189 (33%), Gaps = 42/189 (22%)
Query: 200 VTPPRGMASVGPQSYGGG----------MRPPPNSLA---------GPGLPAMNMGP-GV 239
VTPP V Q+ GGG + P + GP P + GP G
Sbjct: 86 VTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGE 145
Query: 240 RGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQ 298
RGP P PG G PG GPPG P P P G S S M + G
Sbjct: 146 RGPKGRPGPRGPQGIDGEPG-VPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGL 204
Query: 299 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRD 358
G+ P GP GP P + G G AG + PG P D
Sbjct: 205 GSQVGLMPGSVGPVGPRG------PQGLQGQQGG--------------AGPTGPPGEPGD 244
Query: 359 DGEMAAAGT 367
G M G+
Sbjct: 245 PGPMGPIGS 253
Score = 44.3 bits (103), Expect = 2e-04
Identities = 61/194 (31%), Positives = 65/194 (33%), Gaps = 35/194 (18%)
Query: 101 PVMGSMAPGDTMAAGSMAAGFFQGP---PGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
P PG A G GP PGSQ +P P GP G P G R
Sbjct: 1051 PAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTP-----GPVGAPG-----DAGQR 1100
Query: 158 --PTLRMPSQPPA-----GLPGSQPLLPGAMEPSPRA----QGHPSMGGPMQRVTPPRGM 206
P R P PP GLPG Q + R +GH G PP
Sbjct: 1101 GDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPN 1160
Query: 207 ASVGPQSYGG--GMRPPPNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSYTG 263
G G G R PP GP P+ G PG GP P S G
Sbjct: 1161 GEQGSAGIPGPFGPRGPP----GPVGPSGKEGNPGPLGPIGPPGVRG----SVGEAGPEG 1212
Query: 264 PPGGGGPPGTPIMP 277
PPG GPPG P P
Sbjct: 1213 PPGEPGPPGPPGPP 1226
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/183 (30%), Positives = 59/183 (32%), Gaps = 44/183 (24%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQ-----PSPHNPNAPMMGPHGQPFMS 149
A P PV APGD G + GPPG P P P G HG
Sbjct: 1084 APGTPGPVG---APGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDK-GDHGD--RG 1137
Query: 150 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 209
R G R G G Q L PG P+ QG + GP PP V
Sbjct: 1138 DRGQKGHR-----------GFTGLQGL-PGPPGPNGE-QGSAGIPGPFGPRGPP---GPV 1181
Query: 210 GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 269
GP G P L G P + G GP P GPPG G
Sbjct: 1182 GPSGKEGN----PGPLGPIGPPGVRGSVGEAGP-------------EGPPGEPGPPGPPG 1224
Query: 270 PPG 272
PPG
Sbjct: 1225 PPG 1227
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 79.7 bits (195), Expect = 4e-15
Identities = 99/335 (29%), Positives = 118/335 (35%), Gaps = 63/335 (18%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM-------------- 140
AA P P + PG G GP G + P P A +
Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768
Query: 141 --GPHGQP-----FMSPRFPG--GPR--PTLRMPSQP--PAGLPGSQPLLPGAM-EPSPR 186
GP GQP +P PG GPR P R + P PAG PG+ PG EP +
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA----PGQNGEPGGK 824
Query: 187 ----AQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGP 242
A G GGP PP G GP G++ S GPG G+ GP
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPG-PQGVKGERGSPGGPGAAGFPGARGLPGP 883
Query: 243 WASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQG 299
S P S SPG GP G G PG+P + P GD+ E +P QG
Sbjct: 884 PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK----GSPGAQG 939
Query: 300 AGRANFPLG----------PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGA 345
A PLG GP G + P V G G +GL P
Sbjct: 940 PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Query: 346 VAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
+ GL+ G P DG + G P SPG
Sbjct: 1000 LPGLAGTAGEPGRDGNPGSDG-----LPGRDGSPG 1029
Score = 77.4 bits (189), Expect = 2e-14
Identities = 95/307 (30%), Positives = 107/307 (34%), Gaps = 60/307 (19%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQP----FMSPRFPGGPR---- 157
APG G QGPPG +P MGP G P M R P GP
Sbjct: 364 APGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANG 423
Query: 158 -PTLRMPSQPPA-----GLPGSQ--------PLLPGAMEPS--------PRAQGHPSMGG 195
P LR + P G PG + P +PGA P A G P G
Sbjct: 424 APGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAG 483
Query: 196 PMQRVTP-------PRGM-ASVGPQSYGGGMRPP-PNSLAG-PGLPAMNMGPGVRGPWAS 245
+R P P G+ GP G P P AG PG + GPG+RG S
Sbjct: 484 --ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGS 541
Query: 246 PSGNSIPYSSSSPGSY-----TGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQG 299
P G PGS GPPG GP G P +M PG N G+
Sbjct: 542 PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAP--------GKN 593
Query: 300 AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDD 359
R P GPGP+GP P G G G G + P GL PGT
Sbjct: 594 GERGG-PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG--DTGPPGPQGLQGLPGTGGPP 650
Query: 360 GEMAAAG 366
GE G
Sbjct: 651 GENGKPG 657
Score = 73.6 bits (179), Expect = 3e-13
Identities = 89/281 (31%), Positives = 104/281 (37%), Gaps = 49/281 (17%)
Query: 117 MAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL 176
+A G G PG P P P G G P SP PG P P +P P P
Sbjct: 164 VAVGGLAGYPGPAGPPGPPGPP--GTSGHP-GSPGSPGYQGP----PGEPGQAGPSGPPG 216
Query: 177 LPGAMEPSPRA-----QGHPSMGGPMQRVTPP--RGMASV-------GPQSYGG-----G 217
PGA+ PS A G P G PP +G A + G + + G G
Sbjct: 217 PPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Query: 218 MRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS--------YTGPPGGGG 269
P GLP N PG GP +P P + G+ G PG G
Sbjct: 277 ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPG 336
Query: 270 PPGTPIMP-SPGDSTNSSENMYTIMNPIGQ-GAGRANFPLG-PGPEGPMAAMSAMEPHHV 326
PPGT P SPG + P G G+ A G PGP+G A P +
Sbjct: 337 PPGTAGFPGSPGAKGE--------VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGI 388
Query: 327 NGSL-GSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
NGS G G+M P PGA GL A G P G A G
Sbjct: 389 NGSPGGKGEMG--PAGIPGA-PGLMGARGPPGPAGANGAPG 426
Score = 72.0 bits (175), Expect = 8e-13
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 37/301 (12%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
AP P+ APG+ G A +G G++ S P P GP G + FPG P
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPP--GPPG----TAGFPGSPG 348
Query: 158 PTLRMPSQPPAGLPGSQPLLPGAMEPSPR----AQGHPSMGGPMQRVTPPRGMASVGPQS 213
+ PAG PGS EP P+ AQG P GP P G +GP
Sbjct: 349 AKGEVG---PAGSPGSNGAPGQRGEPGPQGHAGAQGPP---GPPGINGSPGGKGEMGPAG 402
Query: 214 YGG-----GMRPPPNSLAGPGLPAMNMG---PGVRGPWASPSGNSIPYSSSSPG-----S 260
G G R PP G P + G PG G P + PG
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKG 462
Query: 261 YTGPPGGGGPPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 319
G G G PG +P + G+ N I G A PGP GP A
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAG 522
Query: 320 AMEPHHVNGSLGSGDMDGLP-------KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
V G G M G P K P G S PG P G G P
Sbjct: 523 EPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPG 582
Query: 373 P 373
P
Sbjct: 583 P 583
Score = 65.5 bits (158), Expect = 8e-11
Identities = 93/323 (28%), Positives = 108/323 (33%), Gaps = 72/323 (22%)
Query: 93 YSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGS--QPSPHNPNAPM-----MGPHGQ 145
Y A P G PG + GS + +QGPPG Q P P P GP G+
Sbjct: 172 YPGPAGPPGPPGP--PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGK 229
Query: 146 PFMSPRFPGGPRPTLRMPSQP----PAGLPGSQPL-----------------LPGAMEPS 184
S R PG P +P P PAG+PG + PG +
Sbjct: 230 DGESGR-PGRPGER-GLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGEN 287
Query: 185 --PRAQGHPS----MGGPMQRVTP--PRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMN 234
P G P G P +R P P + G G G PP G P
Sbjct: 288 GLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
Query: 235 MGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIM 293
G GP SP N P PG G G GPPG P I SPG M
Sbjct: 348 GAKGEVGPAGSPGSNGAPGQRGEPGP-QGHAGAQGPPGPPGINGSPGGKGE--------M 398
Query: 294 NPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-----KSSPG---- 344
P G PG G M A P NG+ G G P K PG
Sbjct: 399 GPAGI----------PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Query: 345 -AVAGLSNAPGTPRDDGEMAAAG 366
AG+ PG +DG+ + G
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPG 471
Score = 64.7 bits (156), Expect = 1e-10
Identities = 94/329 (28%), Positives = 108/329 (32%), Gaps = 65/329 (19%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P P APG G QGPPG GP G P P PGG +
Sbjct: 581 PGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGET--------GPQGPP--GPTGPGGDKG 630
Query: 159 TLRMPS-QPPAGLPGS-----QPLLPGAMEPSPRAQ--------GHPSMGGPMQRVTPPR 204
P Q GLPG+ + PG EP P+ G G P +R P
Sbjct: 631 DTGPPGPQGLQGLPGTGGPPGENGKPG--EPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688
Query: 205 --------GMASVGPQSYGGGMRPP--PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYS 254
G GP+ G PP P + PGL M PG RG SP
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM---PGERGGLGSPGPKGDKGE 745
Query: 255 SSSPGSYTGPPGGGGP--PGTPIMP-----SPGD-STNSSENMYTIMNPIGQGA------ 300
PG+ G PG GP P PI P PGD + + I P G
Sbjct: 746 PGGPGA-DGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG 804
Query: 301 --GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSS-------PGAVAGLSN 351
G A FP PG G G G + G P S P V G
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864
Query: 352 APGTPRDDGEMAAAGTFLHPFPSESYSPG 380
+PG P G A G L P + +PG
Sbjct: 865 SPGGPGAAGFPGARG--LPGPPGSNGNPG 891
Score = 63.5 bits (153), Expect = 3e-10
Identities = 93/344 (27%), Positives = 110/344 (31%), Gaps = 89/344 (25%)
Query: 99 PSPVMGSM-APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
P V G +PG AAG A GPPGS +P P GP G P P GP
Sbjct: 856 PQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPP-----GPSGSPGKDG--PPGPA 908
Query: 158 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPM--QRVTPPRGMA-------- 207
P P P PG + SP AQG P GP+ +T RG+A
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQPGE-KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGP 967
Query: 208 --SVGPQSYGG-----------GMRPPPN-----SLAGP-------------GLPAMNMG 236
S GPQ G G R PP LAG GLP +
Sbjct: 968 RGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS 1027
Query: 237 PGV---RGPWASP--------------------------SGNSIPYSSSSPGSYTGPPGG 267
PG RG SP SG + P + P G PG
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Query: 268 GGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVN 327
GP GD + E + G P PGP G A+ + P
Sbjct: 1088 QGP--------RGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139
Query: 328 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 371
G +G G K G PG + GE + G+ HP
Sbjct: 1140 GPVGPSGPPG--KDGTSGHPGPIGPPGPRGNRGERGSEGSPGHP 1181
Score = 62.8 bits (151), Expect = 5e-10
Identities = 81/292 (27%), Positives = 103/292 (35%), Gaps = 57/292 (19%)
Query: 132 PHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP 191
P P AP P+GQ P+ GP P G+PG QP PG+ P + P
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDP--GIPG-QPGSPGSPGPPGICESCP 145
Query: 192 SMGGPMQRVTPP-------RGMASVGPQSYGGGMRPP-----PNSLAGPGLPAMNMGPGV 239
+ GP Q +P G+A G Y G PP P + PG P PG
Sbjct: 146 T--GP-QNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPG---SPGY 199
Query: 240 RGP-----WASPSGNSIPYSSSSPGS------------------YTGPPGGGGPPGTPIM 276
+GP A PSG P + P GPPG GP G P
Sbjct: 200 QGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGF 259
Query: 277 PSP----GDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 332
P G + E T + G PGP GP A + G+ G+
Sbjct: 260 PGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGA 319
Query: 333 GDMDGLPKSS----PGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
DG S P G + PG+P GE+ AG+ P + +PG
Sbjct: 320 RGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS-----PGSNGAPG 366
Score = 43.9 bits (102), Expect = 2e-04
Identities = 64/267 (23%), Positives = 90/267 (33%), Gaps = 21/267 (7%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
PG + G G PG+ +P +P P +GP G+ R GP P
Sbjct: 1022 PGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKS--GDRGESGPAGPAGAPG-- 1077
Query: 167 PAGLPGSQ-PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSL 225
PAG G+ P P + +G + G P S GP G + P
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP---- 1133
Query: 226 AGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNS 285
GP P +GP SG+ P P G G G PG P P P +
Sbjct: 1134 -GPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGA 1192
Query: 286 SENMYTIMNPIGQGAGRANFP-LGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG 344
P G G A +G G A EP ++ + + ++ KS G
Sbjct: 1193 P-------GPCCGGVGAAAIAGIGGEKAGGFAPYYGDEP--MDFKINTDEIMTSLKSVNG 1243
Query: 345 AVAGLSNAPGTPRDDGEMAAAGTFLHP 371
+ L + G+ ++ F HP
Sbjct: 1244 QIESLISPDGSRKNPARNCRDLKFCHP 1270
Score = 33.9 bits (76), Expect = 0.25
Identities = 44/160 (27%), Positives = 55/160 (34%), Gaps = 35/160 (21%)
Query: 84 SGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPH 143
+G A A + AP P G+T G+ +G PG+ +P +P GP
Sbjct: 1070 AGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP-----GPA 1124
Query: 144 GQP-FMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 202
GQ + P GPR + P+G PG GHP GP
Sbjct: 1125 GQQGAIGSPGPAGPRGPV-----GPSGPPGKD-----------GTSGHPGPIGP----PG 1164
Query: 203 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGP 242
PRG G R S PG P PG GP
Sbjct: 1165 PRG---------NRGERGSEGSPGHPGQPGPPGPPGAPGP 1195
Score = 33.5 bits (75), Expect = 0.33
Identities = 42/157 (26%), Positives = 51/157 (32%), Gaps = 44/157 (28%)
Query: 246 PSGNSIPYSSSSPGSYTGPPGGGGP------------------------PGTPIMPSP-- 279
P G P + T PP G GP PG+P P P
Sbjct: 80 PFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPG 139
Query: 280 -------GDSTNSSE-NMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 331
G S + + Y + + + G G A +P GP GP P +G G
Sbjct: 140 ICESCPTGPQNYSPQYDSYDVKSGVAVG-GLAGYPGPAGPPGPPG------PPGTSGHPG 192
Query: 332 SGDMDGL--PKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
S G P PG AG S PG P G AG
Sbjct: 193 SPGSPGYQGPPGEPGQ-AGPSGPPGPPGAIGPSGPAG 228
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 78.6 bits (192), Expect = 9e-15
Identities = 91/308 (29%), Positives = 107/308 (34%), Gaps = 59/308 (19%)
Query: 103 MGSMAP-GDTMAAGSMAAGFFQGPPGS--QPSPHNPNAPM--MGPHGQPF---------- 147
MG M P G AG+ FQG PG +P P P GP G+P
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 148 MSPRFPGGPRPTLRMPSQPPAGLPGSQ-----PLLPGAM-----------EPSPRAQGHP 191
R P GP+ P P GLPG + P L GA SP G P
Sbjct: 263 AGERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 320
Query: 192 SMGGPM-----QRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP 246
GP + T P G A G PP + G P PG +G A P
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGE-AGP 379
Query: 247 SGNSIPYSSSSPGSYTGPPGGGGP------PGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
+G P + P G PG GP PGT +P S + A
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI-----------A 428
Query: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--PKSSPGAVAGLSNAPGTPRD 358
G FP GP GP A + P G G G PK PG AG APG +
Sbjct: 429 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGE 487
Query: 359 DGEMAAAG 366
+G+ A G
Sbjct: 488 EGKRGARG 495
Score = 75.5 bits (184), Expect = 8e-14
Identities = 93/315 (29%), Positives = 111/315 (35%), Gaps = 63/315 (20%)
Query: 96 AAAPSPVMGSMAPGD---TMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRF 152
A AP P S APG T G A QGPPG+ P A +GP G +P
Sbjct: 860 AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA--AGRVGPPGSNG-NPGP 916
Query: 153 PGGPRPT-------LRMPSQPP--AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP 203
PG P P+ R S PP AG PG Q G P P +G P GP PP
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQ----GPAGP-PGEKGEPGDDGPSGAEGPP 971
Query: 204 --------RGMASV----GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPW 243
RG+ + G + + G G + P + G P PG+ GP
Sbjct: 972 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 1031
Query: 244 ASPSGNSIPYSSSSPG-----------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 292
P P + PG TG G G PG P P P T +
Sbjct: 1032 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---- 1087
Query: 293 MNPIGQGAGRANFPLGP-GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSN 351
+G A P+GP GP G P G G GL K G GL
Sbjct: 1088 -----RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL-KGHRG-FTGLQG 1140
Query: 352 APGTPRDDGEMAAAG 366
PG P G+ A+G
Sbjct: 1141 LPGPPGPSGDQGASG 1155
Score = 72.0 bits (175), Expect = 8e-13
Identities = 77/267 (28%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 124 GPPGSQPSPHNPNAP----MMGPHGQPF-MSPRFPGGPRPTLRMPSQP-PAGLPGSQPLL 177
GPPG + +P N P + GP G P P GP+ P +P GLPG++ L
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 178 --PGAMEP--------SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPP 222
PG P +P G P GP P M GP+ G G + P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Query: 223 NSLAGPGLPAMNMGPGVRGPW--ASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
+ GLP + G GP A P+G + P + G PG GPPG PG
Sbjct: 624 GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG--GKPG 681
Query: 281 DSTNSSE-NMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP 339
D E ++ P G+ PG G A P + G+ G+ G
Sbjct: 682 DQGVPGEAGAPGLVGPRGERG-------FPGERGSPGAQGLQGPRGLPGTPGTDGPKG-- 732
Query: 340 KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
S P G PG GE AAG
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAG 759
Score = 68.9 bits (167), Expect = 7e-12
Identities = 79/280 (28%), Positives = 102/280 (36%), Gaps = 41/280 (14%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPFMSPRFPG 154
P P PGD G A GP G + P +P + GP G PG
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG-------LPG 723
Query: 155 GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG-MASVGPQS 213
P + PAG PG+Q P ++ P +G + GP RG + GP+
Sbjct: 724 TPGTDGPKGASGPAGPPGAQG--PPGLQGMPGERGAAGIAGPKG----DRGDVGEKGPEG 777
Query: 214 YGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG-- 269
G G R + PG N G GP P+G++ + TGPPG G
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAGARGAPGERGETGPPGPAGFA 836
Query: 270 -PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 328
PPG PG E AG+ PGP+GP A P V G
Sbjct: 837 GPPGAD--GQPGAKGEQGE------------AGQKGDAGAPGPQGPSGAPGPQGPTGVTG 882
Query: 329 SLGSGDMDGLPKSS--PGAVAGLSNAPGTPRDDGEMAAAG 366
G+ G P ++ PGA AG PG+ + G G
Sbjct: 883 PKGARGAQGPPGATGFPGA-AGRVGPPGSNGNPGPPGPPG 921
Score = 66.2 bits (160), Expect = 5e-11
Identities = 86/297 (28%), Positives = 103/297 (34%), Gaps = 45/297 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----------MMGPHGQP-FMSPR----F 152
PG AG GP G Q P P P + G G P + PR F
Sbjct: 644 PGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGF 703
Query: 153 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPS--------PRAQGHPSMGG-PMQR---- 199
PG Q P GLPG+ PG P P AQG P + G P +R
Sbjct: 704 PGERGSPGAQGLQGPRGLPGT----PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAG 759
Query: 200 VTPPRG----MASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPY 253
+ P+G + GP+ G G R + PG N G GP P+G++
Sbjct: 760 IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAGAR 818
Query: 254 SSSSPGSYTGPPGG---GGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP- 309
+ TGPPG GPPG P + P QG A P GP
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 878
Query: 310 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G GP A A P G G+ G P S+ G PG DG A G
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN--PGPPGPPGPSGKDGPKGARG 933
Score = 64.7 bits (156), Expect = 1e-10
Identities = 96/308 (31%), Positives = 114/308 (37%), Gaps = 63/308 (20%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
+P P+ PG+ G A +G G QP P P P+ GP G P FPG P
Sbjct: 319 SPGPMGPRGLPGERGRTGPAGAAGARGNDG-QPGPAGPPGPV-GPAG----GPGFPGAPG 372
Query: 158 ------PT-LRMP--SQPPAGLPGSQPLLPGAMEPS--PRAQGHP----SMGGPMQRVTP 202
PT R P +Q P G PG+ P PG S P G P S G P P
Sbjct: 373 AKGEAGPTGARGPEGAQGPRGEPGT-PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 431
Query: 203 ----PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMN--MGP-GVRGPWASPSGNSIPYSS 255
PRG GPQ G + P + PG+ GP G GP A P G P
Sbjct: 432 GFPGPRGPP--GPQGATGPLGPKGQT-GEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGE 487
Query: 256 SSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-GRANFPLGPGPEGP 314
G PGG GP G PG+ +GA G FP G GP
Sbjct: 488 EGKRGARGEPGGVGPIG-----PPGE----------------RGAPGNRGFPGQDGLAGP 526
Query: 315 MAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
A P + G G+ G P PGA GL+ PG G++ +G
Sbjct: 527 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA-RGLTGRPGDAGPQGKVGPSGA----- 580
Query: 373 PSESYSPG 380
P E PG
Sbjct: 581 PGEDGRPG 588
Score = 60.5 bits (145), Expect = 3e-09
Identities = 80/295 (27%), Positives = 94/295 (31%), Gaps = 41/295 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQ--------PFMSPRFPGGPRPT 159
G A+G QGPPG Q P A + GP G P +P GG T
Sbjct: 729 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 788
Query: 160 LRMPSQPPAGLPGSQ-------PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQ 212
+ PAG G + P +P +G GP PP G +
Sbjct: 789 GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 848
Query: 213 SYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPP 265
G G P G P GV GP + P ++ PG+ GPP
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 266 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHH 325
G G PG P P P P GRA P GP GP EP
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPP-----GRAGEPGLQGPAGPPGEKG--EP-- 959
Query: 326 VNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
G G +G P P +AG G P GE G P S PG
Sbjct: 960 --GDDGPSGAEGPP--GPQGLAGQRGIVGLPGQRGERGFPG-----LPGPSGEPG 1005
Score = 59.3 bits (142), Expect = 6e-09
Identities = 59/177 (33%), Positives = 66/177 (37%), Gaps = 20/177 (11%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQP-FMSPRFPGGPRPTLRMPS-QP 166
GD G++ A GPPGS P P P G G+ P P GP + Q
Sbjct: 1056 GDRGETGAVGAPGAPGPPGS-PGPAGPTGKQ-GDRGEAGAQGPMGPSGPAGARGIQGPQG 1113
Query: 167 PAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPN 223
P G G A EP R +GH G PP G G G R PP
Sbjct: 1114 PRGDKGE------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG 1167
Query: 224 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
+ G N PG GP P G S + P GPPG GPPG P P PG
Sbjct: 1168 PVGPSGKDGANGIPGPIGP-PGPRGRS---GETGPA---GPPGNPGPPGPPGPPGPG 1217
Score = 53.5 bits (127), Expect = 3e-07
Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 203 PRGMASVGPQSYGGGMRPPPNSL---AGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSP 258
P +A+ Q G + P + GP P GP G +GP G+ + P
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGP 148
Query: 259 GSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIM-NPIGQGAGRANF-----PLGP-GP 311
G PG G PG P P P N M + AG A P+GP GP
Sbjct: 149 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 208
Query: 312 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
GP A P G+ G G+ S P G PG P DDGE G
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPPGKPGDDGEAGKPG 261
Score = 46.6 bits (109), Expect = 4e-05
Identities = 61/223 (27%), Positives = 74/223 (33%), Gaps = 31/223 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLR------- 161
G+ G+ A +GPPG P + GP G+P PG P R
Sbjct: 1002 GEPGKQGAPGASGDRGPPGPVGPPG-----LTGPAGEPGREGS-PGADGPPGRDGAAGVK 1055
Query: 162 --MPSQPPAGLPGSQ--PLLPGAMEPSPRA--QGHPSMGGPMQRVTPPRGMASVGPQSYG 215
G PG+ P PG P+ + +G GPM P GPQ
Sbjct: 1056 GDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ--- 1112
Query: 216 GGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP--PGT 273
G R PG + G G P P S +GP G GP P
Sbjct: 1113 -GPRGDKGEAGEPGERGLKGHRGFTGLQGLPG----PPGPSGDQGASGPAGPSGPRGPPG 1167
Query: 274 PIMPSPGDSTNSSENMYTIMNPIGQG--AGRANFPLGPGPEGP 314
P+ PS D N P G+ G A P PGP GP
Sbjct: 1168 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1210
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 78.6 bits (192), Expect = 9e-15
Identities = 91/308 (29%), Positives = 107/308 (34%), Gaps = 59/308 (19%)
Query: 103 MGSMAP-GDTMAAGSMAAGFFQGPPGS--QPSPHNPNAPM--MGPHGQPF---------- 147
MG M P G AG+ FQG PG +P P P GP G+P
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 148 MSPRFPGGPRPTLRMPSQPPAGLPGSQ-----PLLPGAM-----------EPSPRAQGHP 191
R P GP+ P P GLPG + P L GA SP G P
Sbjct: 194 AGERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 251
Query: 192 SMGGPM-----QRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP 246
GP + T P G A G PP + G P PG +G A P
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGE-AGP 310
Query: 247 SGNSIPYSSSSPGSYTGPPGGGGP------PGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
+G P + P G PG GP PGT +P S + A
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI-----------A 359
Query: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--PKSSPGAVAGLSNAPGTPRD 358
G FP GP GP A + P G G G PK PG AG APG +
Sbjct: 360 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGE 418
Query: 359 DGEMAAAG 366
+G+ A G
Sbjct: 419 EGKRGARG 426
Score = 75.5 bits (184), Expect = 8e-14
Identities = 93/315 (29%), Positives = 111/315 (35%), Gaps = 63/315 (20%)
Query: 96 AAAPSPVMGSMAPGD---TMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRF 152
A AP P S APG T G A QGPPG+ P A +GP G +P
Sbjct: 791 AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP--GAAGRVGPPGSN-GNPGP 847
Query: 153 PGGPRPT-------LRMPSQPP--AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP 203
PG P P+ R S PP AG PG L G P P +G P GP PP
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPG----LQGPAGP-PGEKGEPGDDGPSGAEGPP 902
Query: 204 --------RGMASV----GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPW 243
RG+ + G + + G G + P + G P PG+ GP
Sbjct: 903 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 962
Query: 244 ASPSGNSIPYSSSSPG-----------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 292
P P + PG TG G G PG P P P T +
Sbjct: 963 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---- 1018
Query: 293 MNPIGQGAGRANFPLGP-GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSN 351
+G A P+GP GP G P G G GL K G GL
Sbjct: 1019 -----RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL-KGHRG-FTGLQG 1071
Query: 352 APGTPRDDGEMAAAG 366
PG P G+ A+G
Sbjct: 1072 LPGPPGPSGDQGASG 1086
Score = 72.0 bits (175), Expect = 8e-13
Identities = 77/267 (28%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 124 GPPGSQPSPHNPNAP----MMGPHGQPF-MSPRFPGGPRPTLRMPSQP-PAGLPGSQPLL 177
GPPG + +P N P + GP G P P GP+ P +P GLPG++ L
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 178 --PGAMEP--------SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPP 222
PG P +P G P GP P M GP+ G G + P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Query: 223 NSLAGPGLPAMNMGPGVRGPW--ASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
+ GLP + G GP A P+G + P + G PG GPPG PG
Sbjct: 555 GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG--GKPG 612
Query: 281 DSTNSSE-NMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP 339
D E ++ P G+ PG G A P + G+ G+ G
Sbjct: 613 DQGVPGEAGAPGLVGPRGERG-------FPGERGSPGAQGLQGPRGLPGTPGTDGPKG-- 663
Query: 340 KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
S P G PG GE AAG
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAG 690
Score = 68.9 bits (167), Expect = 7e-12
Identities = 79/280 (28%), Positives = 102/280 (36%), Gaps = 41/280 (14%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPFMSPRFPG 154
P P PGD G A GP G + P +P + GP G PG
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG-------LPG 654
Query: 155 GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG-MASVGPQS 213
P + PAG PG+Q P ++ P +G + GP RG + GP+
Sbjct: 655 TPGTDGPKGASGPAGPPGAQG--PPGLQGMPGERGAAGIAGPKG----DRGDVGEKGPEG 708
Query: 214 YGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG-- 269
G G R + PG N G GP P+G++ + TGPPG G
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAGARGAPGERGETGPPGPAGFA 767
Query: 270 -PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 328
PPG PG E AG+ PGP+GP A P V G
Sbjct: 768 GPPGAD--GQPGAKGEQGE------------AGQKGDAGAPGPQGPSGAPGPQGPTGVTG 813
Query: 329 SLGSGDMDGLPKSS--PGAVAGLSNAPGTPRDDGEMAAAG 366
G+ G P ++ PGA AG PG+ + G G
Sbjct: 814 PKGARGAQGPPGATGFPGA-AGRVGPPGSNGNPGPPGPPG 852
Score = 66.2 bits (160), Expect = 5e-11
Identities = 86/297 (28%), Positives = 103/297 (34%), Gaps = 45/297 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----------MMGPHGQP-FMSPR----F 152
PG AG GP G Q P P P + G G P + PR F
Sbjct: 575 PGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGF 634
Query: 153 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPS--------PRAQGHPSMGG-PMQR---- 199
PG Q P GLPG+ PG P P AQG P + G P +R
Sbjct: 635 PGERGSPGAQGLQGPRGLPGT----PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAG 690
Query: 200 VTPPRG----MASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPY 253
+ P+G + GP+ G G R + PG N G GP P+G++
Sbjct: 691 IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-PGPAGSAGAR 749
Query: 254 SSSSPGSYTGPPGG---GGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP- 309
+ TGPPG GPPG P + P QG A P GP
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 809
Query: 310 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G GP A A P G G+ G P S+ G PG DG A G
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN--PGPPGPPGPSGKDGPKGARG 864
Score = 64.7 bits (156), Expect = 1e-10
Identities = 96/308 (31%), Positives = 114/308 (37%), Gaps = 63/308 (20%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
+P P+ PG+ G A +G G QP P P P+ GP G P FPG P
Sbjct: 250 SPGPMGPRGLPGERGRTGPAGAAGARGNDG-QPGPAGPPGPV-GPAG----GPGFPGAPG 303
Query: 158 ------PT-LRMP--SQPPAGLPGSQPLLPGAMEPS--PRAQGHP----SMGGPMQRVTP 202
PT R P +Q P G PG+ P PG S P G P S G P P
Sbjct: 304 AKGEAGPTGARGPEGAQGPRGEPGT-PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 362
Query: 203 ----PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMN--MGP-GVRGPWASPSGNSIPYSS 255
PRG GPQ G + P + PG+ GP G GP A P G P
Sbjct: 363 GFPGPRGPP--GPQGATGPLGPKGQT-GEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGE 418
Query: 256 SSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-GRANFPLGPGPEGP 314
G PGG GP G PG+ +GA G FP G GP
Sbjct: 419 EGKRGARGEPGGVGPIG-----PPGE----------------RGAPGNRGFPGQDGLAGP 457
Query: 315 MAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 372
A P + G G+ G P PGA GL+ PG G++ +G
Sbjct: 458 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA-RGLTGRPGDAGPQGKVGPSGA----- 511
Query: 373 PSESYSPG 380
P E PG
Sbjct: 512 PGEDGRPG 519
Score = 60.5 bits (145), Expect = 3e-09
Identities = 80/295 (27%), Positives = 94/295 (31%), Gaps = 41/295 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQ--------PFMSPRFPGGPRPT 159
G A+G QGPPG Q P A + GP G P +P GG T
Sbjct: 660 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 719
Query: 160 LRMPSQPPAGLPGSQ-------PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQ 212
+ PAG G + P +P +G GP PP G +
Sbjct: 720 GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 779
Query: 213 SYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPP 265
G G P G P GV GP + P ++ PG+ GPP
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 266 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHH 325
G G PG P P P P GRA P GP GP EP
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPP-----GRAGEPGLQGPAGPPGEKG--EP-- 890
Query: 326 VNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
G G +G P P +AG G P GE G P S PG
Sbjct: 891 --GDDGPSGAEGPP--GPQGLAGQRGIVGLPGQRGERGFPG-----LPGPSGEPG 936
Score = 59.3 bits (142), Expect = 6e-09
Identities = 59/177 (33%), Positives = 66/177 (37%), Gaps = 20/177 (11%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQP-FMSPRFPGGPRPTLRMPS-QP 166
GD G++ A GPPGS P P P G G+ P P GP + Q
Sbjct: 987 GDRGETGAVGAPGAPGPPGS-PGPAGPTGKQ-GDRGEAGAQGPMGPSGPAGARGIQGPQG 1044
Query: 167 PAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPN 223
P G G A EP R +GH G PP G G G R PP
Sbjct: 1045 PRGDKGE------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG 1098
Query: 224 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
+ G N PG GP P G S + P GPPG GPPG P P PG
Sbjct: 1099 PVGPSGKDGANGIPGPIGP-PGPRGRS---GETGPA---GPPGNPGPPGPPGPPGPG 1148
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/150 (31%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 225 LAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 283
+ GP P GP G +GP G+ + P G PG G PG P P P
Sbjct: 46 IVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPP 104
Query: 284 NSSENMYTIM-NPIGQGAGRANF-----PLGP-GPEGPMAAMSAMEPHHVNGSLGSGDMD 336
N M + AG A P+GP GP GP A P G+ G
Sbjct: 105 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164
Query: 337 GLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G+ S P G PG P DDGE G
Sbjct: 165 GV--SGPMGPRGPPGPPGKPGDDGEAGKPG 192
Score = 46.6 bits (109), Expect = 4e-05
Identities = 61/223 (27%), Positives = 74/223 (33%), Gaps = 31/223 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLR------- 161
G+ G+ A +GPPG P + GP G+P PG P R
Sbjct: 933 GEPGKQGAPGASGDRGPPGPVGPPG-----LTGPAGEPGREGS-PGADGPPGRDGAAGVK 986
Query: 162 --MPSQPPAGLPGSQ--PLLPGAMEPSPRA--QGHPSMGGPMQRVTPPRGMASVGPQSYG 215
G PG+ P PG P+ + +G GPM P GPQ
Sbjct: 987 GDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ--- 1043
Query: 216 GGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP--PGT 273
G R PG + G G P P S +GP G GP P
Sbjct: 1044 -GPRGDKGEAGEPGERGLKGHRGFTGLQGLPG----PPGPSGDQGASGPAGPSGPRGPPG 1098
Query: 274 PIMPSPGDSTNSSENMYTIMNPIGQG--AGRANFPLGPGPEGP 314
P+ PS D N P G+ G A P PGP GP
Sbjct: 1099 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1141
Score = 40.0 bits (92), Expect = 0.004
Identities = 70/271 (25%), Positives = 85/271 (31%), Gaps = 61/271 (22%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQP-----FMSPRFPGGPRPTLRMPSQPPAGLPGSQPLL 177
QG QP P G G+P + P+ P GP Q PAG
Sbjct: 24 QGQDVRQPGPK-------GQKGEPGDIKDIVGPKGPPGP--------QGPAG-------- 60
Query: 178 PGAMEPSPRA----QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAM 233
E PR +G GP R P + GP PP PGL
Sbjct: 61 ----EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG-------PPGPPGPPGLGG- 108
Query: 234 NMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP----IMPSPGDSTNSSENM 289
N + G + +G + P GP G GP G P +PG+
Sbjct: 109 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG--- 165
Query: 290 YTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGL 349
+ P+G G P PG +G G G+ G P PG V G
Sbjct: 166 --VSGPMGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP-GLPG-VKGH 220
Query: 350 SNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
PG GE A G ES SPG
Sbjct: 221 RGYPGLDGAKGEAGAPGV-----KGESGSPG 246
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 78.2 bits (191), Expect = 1e-14
Identities = 103/346 (29%), Positives = 117/346 (33%), Gaps = 70/346 (20%)
Query: 93 YSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQ--PSPHNPNAPM--MGPHG---- 144
Y A P + G G+ GS GPPGS+ P P P P GP G
Sbjct: 1091 YPGATGPPGLPG--IKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGE 1148
Query: 145 ---QPFMS-PRFPGGPRPT-----LRMPSQP-------------PAGLPGSQPLLPGAME 182
Q F P FPG P P + P P P+GLPGS PG
Sbjct: 1149 KGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGS----PGPPG 1204
Query: 183 PSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP--PNSLAGPGLPAMNMGPGVR 240
P P QG + G + P GP G M PP PGLP G
Sbjct: 1205 P-PGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP 1263
Query: 241 GPWASPSGNSIPYSSSSPGSY-----TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNP 295
GP P P + PG+ GPPG GPPG P P P S+ +
Sbjct: 1264 GP---PGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGI--SAVGLKGDRGA 1318
Query: 296 IGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVA--- 347
G+ G A P PGP G G G G PK PGA
Sbjct: 1319 TGE-RGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKG 1377
Query: 348 -----GLSNAPGTPRDDGEM------AAAGTFLHP-FPSESYSPGM 381
G + PG P G M AG HP P S SPG+
Sbjct: 1378 QAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGL 1423
Score = 62.8 bits (151), Expect = 5e-10
Identities = 83/293 (28%), Positives = 99/293 (33%), Gaps = 71/293 (24%)
Query: 124 GPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQP-PAGLP---------- 171
GPPGS P P MGP G+P P G P P P QP PAG+
Sbjct: 1264 GPPGSTGRPGAEGEPGAMGPQGRPG-PPGHVGPPGP----PGQPGPAGISAVGLKGDRGA 1318
Query: 172 -GSQPL--LPGAMEPS--PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLA 226
G + L LPG P P G P G + PP G Q + G PP
Sbjct: 1319 TGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPP------GKQGFYG----PPGPKG 1368
Query: 227 GPGLPAMNMGPGVRGPWASP-----SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP---- 277
PG G +G P SG+ P P G PG GP G+P +P
Sbjct: 1369 DPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPG 1428
Query: 278 SPGDSTNSSENMYTIMNPI--------GQGAGRANFPL----------GPGPEGPMAAMS 319
S GD N E I I R FP+ PG +G
Sbjct: 1429 SMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPG 1488
Query: 320 AMEPHHVNGSLGSGDMDGLP--KSSPG----------AVAGLSNAPGTPRDDG 360
A + G +G GLP + PG +AG + PG P G
Sbjct: 1489 APGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQG 1541
Score = 61.2 bits (147), Expect = 1e-09
Identities = 84/291 (28%), Positives = 109/291 (37%), Gaps = 58/291 (19%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSP----RFPGGPR------ 157
PG AG +G G +P +P P G G+P +S + P GP+
Sbjct: 669 PGKQGKAGERG---LKGQKGDAGNPGDPGTP--GTTGRPGLSGEPGVQGPAGPKGEKGDG 723
Query: 158 ----PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGP--MQRVTPPRGMASVG- 210
P+L+ AG PG QP G E P G P G + V P G+ V
Sbjct: 724 CTACPSLQGTVTDMAGRPG-QPGPKG--EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQG 780
Query: 211 -PQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG-----SYTGP 264
P G G++ P PGLP + PG RGP P+G + SPG GP
Sbjct: 781 EPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGP-PGPTGEK--GAQGSPGVKGATGPVGP 837
Query: 265 PGG--GGPPG-------TPIMPSPGD-------------STNSSENMYTIMNPIGQGAGR 302
PG GPPG T + +PG+ S S ++ P G
Sbjct: 838 PGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWM 897
Query: 303 ANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAP 353
+ PGP+GP P V G G +GLP PG A L + P
Sbjct: 898 GS-SWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLP-GQPGLTAELGSLP 946
Score = 54.7 bits (130), Expect = 1e-07
Identities = 52/189 (27%), Positives = 63/189 (33%), Gaps = 24/189 (12%)
Query: 184 SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP--PNSLAGPGLPAMNMGPGVRG 241
SP G P + G PP S GP G + PP P ++ PGLP + G RG
Sbjct: 1019 SPGLPGPPGLPGQRGEEGPPGMRGSPGPP---GPIGPPGFPGAVGSPGLPGLQ---GERG 1072
Query: 242 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAG 301
P PG PG GPPG P + T S+ P +G
Sbjct: 1073 LTGLTGDKGEPGPPGQPGY----PGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGL- 1127
Query: 302 RANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPR 357
PGP GP P +G G G P P G +PG P
Sbjct: 1128 -------PGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPG 1180
Query: 358 DDGEMAAAG 366
E + G
Sbjct: 1181 PQAEKGSEG 1189
Score = 53.9 bits (128), Expect = 2e-07
Identities = 82/331 (24%), Positives = 114/331 (34%), Gaps = 52/331 (15%)
Query: 87 AKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQ----GPPGSQPSPH--------- 133
AK Q+ +A P V G+ T+A G + GPPGS+
Sbjct: 305 AKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGNDCVRI 364
Query: 134 NPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLL-------PGAMEPSPR 186
+P+AP+ G P+ G L P+GLPGS G ++ P
Sbjct: 365 SPDAPLQCAEG-----PKGEKGESGALG-----PSGLPGSTGEKGQKGEKGDGGIKGVPG 414
Query: 187 AQGHPSMGGPMQRVTPPRGMAS----VGPQSYGGGMRPPPNSLAGP---GLPAMNMGPG- 238
G G + V P+G VGP+ G P P L GP GLP PG
Sbjct: 415 KPGRDGRPGEIC-VIGPKGQKGDPGFVGPEGLAG--EPGPPGLPGPPGIGLPGTPGDPGG 471
Query: 239 VRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP--IMPSPGDSTNSSENMYTIMNPI 296
GP + IP PG G PG G G P + P+ + + + P
Sbjct: 472 PPGPKGDKGSSGIP-GKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPK 530
Query: 297 GQGAGRANFPLGPGPEGP--------MAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAG 348
G+ PG +G ++ S + H+ S G+ G P + G
Sbjct: 531 GEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPG 590
Query: 349 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 379
+ PG + G AG P P P
Sbjct: 591 RAGVPGLKGEKGNFGEAGPAGSPGPPGPVGP 621
Score = 51.2 bits (121), Expect = 2e-06
Identities = 82/286 (28%), Positives = 91/286 (31%), Gaps = 51/286 (17%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLP---G 179
QGPPG P P P G G P + PG P T + S LP Q LL G
Sbjct: 906 QGPPGIPGPPGPPGVP--GLQGVPGNNG-LPGQPGLTAELGS-----LPIEQHLLKSICG 957
Query: 180 AMEPSPRA-------------QGHPSMGGP------MQRVTPPRGMASVGPQSYGGGMRP 220
RA QG P + G + PR + G S G
Sbjct: 958 DCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGD---- 1013
Query: 221 PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSP 279
P + PGLP PG RG P P GPPG GPPG P + SP
Sbjct: 1014 -PGCVGSPGLPGPPGLPGQRGEEGPPGMRGSP----------GPPGPIGPPGFPGAVGSP 1062
Query: 280 GDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP 339
G E T + G P PG GP GS G G P
Sbjct: 1063 GLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPP 1122
Query: 340 KS----SPGAVAGLSNAPGTPRDDGEMAAAGTFLHP-FPSESYSPG 380
S P AG G + GE G P FP PG
Sbjct: 1123 GSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPG 1168
Score = 49.7 bits (117), Expect = 4e-06
Identities = 69/268 (25%), Positives = 93/268 (34%), Gaps = 38/268 (14%)
Query: 124 GPPGSQPSPHNPNAP-MMGPHGQPF-MSPRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGA 180
G PG + P P + G G P + P P G + + +P +P P G PG +P
Sbjct: 483 GIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDP--VPAR 540
Query: 181 MEPSPRA----QGHP-----SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLP 231
+P + +G P S+ G V+ VG +G PGLP
Sbjct: 541 GDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGL-----------PGLP 589
Query: 232 AMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYT 291
PG++G + G + P S P GP G G G P P P S ++
Sbjct: 590 GRAGVPGLKGEKGN-FGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRV 648
Query: 292 IMNPIGQGAGRANFPLG---PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA- 347
+ P G P G PG +G + G G G P +PG
Sbjct: 649 VALPGPSGEKGEPGPPGFGLPGKQGKAGERG------LKGQKGDAGNPGDP-GTPGTTGR 701
Query: 348 -GLSNAPGTPRDDGEMAAAGTFLHPFPS 374
GLS PG G G PS
Sbjct: 702 PGLSGEPGVQGPAGPKGEKGDGCTACPS 729
Score = 49.7 bits (117), Expect = 4e-06
Identities = 81/312 (25%), Positives = 99/312 (31%), Gaps = 84/312 (26%)
Query: 123 QGPPGS---QPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 179
QGPPG Q P P + GP G+P G P GLPG Q L
Sbjct: 770 QGPPGLKGVQGEPGPPGRGVQGPQGEP-------GAP------------GLPGIQGLPGP 810
Query: 180 AMEPSPR----AQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAG--- 227
P P AQG P + G V PP G + GP G G+R P
Sbjct: 811 RGPPGPTGEKGAQGSPGVKGATGPVGPP-GASVSGPPGRDGQQGQTGLRGTPGEKGPRGE 869
Query: 228 --------------------PGLPAMNMG----PGVRGPWASPSGNSIPYSSSSPGSYTG 263
PG P + MG PG +GP P P PG G
Sbjct: 870 KGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPP---GVPG-LQG 925
Query: 264 PPGGGGPPGTPIMPSPGDSTNSSENMY-TIMNPIGQG-------------AGRANFPLGP 309
PG G PG P + + S +++ +I QG G P P
Sbjct: 926 VPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVP 985
Query: 310 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAGT 367
G + ++E + G + PG V GL PG P GE G
Sbjct: 986 GLDNCAQCFLSLERPRAEEARGDNS-----EGDPGCVGSPGLPGPPGLPGQRGEEGPPGM 1040
Query: 368 FLHPFPSESYSP 379
P P P
Sbjct: 1041 RGSPGPPGPIGP 1052
Score = 48.9 bits (115), Expect = 8e-06
Identities = 75/255 (29%), Positives = 86/255 (33%), Gaps = 69/255 (27%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQ-----PSPH-NPNAPMMGPHGQPFMSPR--FPGGPRPT 159
PG G+ A +GPPG Q P P +P A G GQ R PGGP +
Sbjct: 1337 PGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAA--GQKGQAGEKGRAGMPGGPGKS 1394
Query: 160 LRMPSQPPAGLPGSQPLLPGAMEPS--PRAQGHPSMGGPM-------------------- 197
M P G P + PGA PS P G P G M
Sbjct: 1395 GSMGPVGPPG-PAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDE 1453
Query: 198 ------QRVTPPRGMASV----GPQSYGGGMRPPPNSLAGPGLPAM-----NMG-PGVRG 241
R+ P MA+ GP G P + PGLP G PGVRG
Sbjct: 1454 RMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRP-GAPGSPGLPGQIGREGRQGLPGVRG 1512
Query: 242 -PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
P I + GPPG GPPG M + G P+GQ
Sbjct: 1513 LPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATG--------------PMGQ-- 1556
Query: 301 GRANFPLGPGPEGPM 315
P PGP GPM
Sbjct: 1557 --QGIPGIPGPPGPM 1569
Score = 39.7 bits (91), Expect = 0.005
Identities = 54/204 (26%), Positives = 70/204 (34%), Gaps = 33/204 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGP----------- 156
PG +GSM GPPG +P AP GP G P + P PG
Sbjct: 1388 PGGPGKSGSMGP---VGPPGPAGERGHPGAP--GPSGSPGL-PGVPGSMGDMVNYDEIKR 1441
Query: 157 ---RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 213
+ ++M + A S+ P M +P G P G R P G
Sbjct: 1442 FIRQEIIKMFDERMAYYT-SRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIG 1500
Query: 214 YGG-----GMRPPPNSLA-----GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTG 263
G G+R P + G G+ N PG GP P + ++ P G
Sbjct: 1501 REGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKM--GATGPMGQQG 1558
Query: 264 PPGGGGPPGTPIMPSPGDSTNSSE 287
PG GPPG P N S+
Sbjct: 1559 IPGIPGPPGPMGQPGKAGHCNPSD 1582
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 77.4 bits (189), Expect = 2e-14
Identities = 80/256 (31%), Positives = 92/256 (35%), Gaps = 34/256 (13%)
Query: 106 MAPGDTMAAGSMAAGFFQGPPGS----QPSPHNPNAPMMGPHGQPFMSPRFPGGP-RPTL 160
+ P + G +A GF G PG Q P P PM GPHG PGGP P L
Sbjct: 614 LVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGG-------PGGPVGPRL 666
Query: 161 RMPSQPPAG------LPGSQPLLPGAME------PSPRAQGHPSMGGPMQRVTPPRGMAS 208
P PP G PG P+ G M P P +G GG PP +
Sbjct: 667 LGPPPPPRGGDPFWDGPG-DPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGA 725
Query: 209 VGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 268
G +S GG PPN GPG +G G P P G +SS + GP GG
Sbjct: 726 RGGRSGGG----PPNGRGGPG--GGMVGGGGHRPHEGPGGGM--GNSSGHRPHEGPGGGM 777
Query: 269 GPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 328
G P PG S P G +G + GP G M A PH G
Sbjct: 778 GSGHRP-HEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPG 836
Query: 329 SLGSGDMDGLPKSSPG 344
G P PG
Sbjct: 837 GSMGGSGGHRPHEGPG 852
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/248 (29%), Positives = 85/248 (34%), Gaps = 36/248 (14%)
Query: 115 GSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ 174
GSM AG +GP G N + G P P+ + QP Q
Sbjct: 563 GSMGAG--KGPQGPGGGGINVQEILTSIMGSP--------NSHPSEELLKQPDYSDKIKQ 612
Query: 175 PLLP-GAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAM 233
L+P G + P P A G P GGP P+GM P G P P GPG P
Sbjct: 613 MLVPHGLLGPGPIANGFPP-GGP----GGPKGMQHFPPGPGG----PMPGPHGGPGGP-- 661
Query: 234 NMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSE--NMYT 291
+GP + GP P G + GP GG PG P P N
Sbjct: 662 -VGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPG----PGPYHRGRGGRGGNEPP 716
Query: 292 IMNPIGQGAGRANFPLGP-----GPEGPMAAMSAMEPHHVNGSLGSGDMDG-LPKSSPGA 345
P +GA GP GP G M PH G G G+ G P PG
Sbjct: 717 PPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG-GMGNSSGHRPHEGPGG 775
Query: 346 VAGLSNAP 353
G + P
Sbjct: 776 GMGSGHRP 783
Score = 33.1 bits (74), Expect = 0.43
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 122 FQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAM 181
F+G ++PS P++P P + + R PG P P + +P L + L PGA+
Sbjct: 322 FEGKTSTEPSTAKPSSPEPAPPSEAMDADR-PGTPVPPVEVPE-----LMDTASLEPGAL 375
Query: 182 EPSP-RAQGHPS 192
+ P + G P+
Sbjct: 376 DAKPVESPGDPN 387
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 77.0 bits (188), Expect = 3e-14
Identities = 86/298 (28%), Positives = 112/298 (37%), Gaps = 48/298 (16%)
Query: 82 EHSGEAKAFQDYSAAAAPSPVMGSMA---PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP 138
++ E Y P+P MG A G + S+ QGP G +P P P P
Sbjct: 78 QYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGE--QGPRG-EPGPRGPPGP 134
Query: 139 MMGPHGQPFMSPRFPGGPRPTLRMPSQP-PAGLPG-SQPLLPGAMEPSPRAQGHPSMGGP 196
P PG P ++ +P P G PG +P +PG M P A G P G
Sbjct: 135 -----------PGLPGHGIPGIK--GKPGPQGYPGVGKPGMPG-MPGKPGAMGMPGAKGE 180
Query: 197 MQRVTPPRGMASVGPQSYGGGMRPP-PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSS 255
+ + +GP G PP P+ L G G P GPG+ G P G+ P
Sbjct: 181 IGQ------KGEIGPMGIPGPQGPPGPHGLPGIGKPG---GPGLPGQ-PGPKGDRGPKGL 230
Query: 256 SSPGSYTGPPG--GGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLGPGPE 312
P GP G G G PG P + P M+ P+G G G+ PGP+
Sbjct: 231 PGPQGLRGPKGDKGFGMPGAPGVKGP-------PGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Query: 313 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG----AVAGLSNAPGTPRDDGEMAAAG 366
GP+ A G +G + G P PG G+ PG P GE G
Sbjct: 284 GPLGKPGAPGEPGPQGPIGVPGVQG-PPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPG 340
Score = 69.7 bits (169), Expect = 4e-12
Identities = 89/307 (28%), Positives = 106/307 (34%), Gaps = 53/307 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFM--SPRFPGGPRPTLRMPS 164
APG+ G + QGPPG P +G GQ + P FPGG + +P
Sbjct: 291 APGEPGPQGPIGVPGVQGPPG---------IPGIGKPGQDGIPGQPGFPGG-KGEQGLPG 340
Query: 165 QP-PAGLPG-SQPLLPGAMEP----------SPRAQ----GHPSMGGPMQR--------- 199
P P GLPG +P PG PR + G P +GGP
Sbjct: 341 LPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGP 400
Query: 200 VTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 257
+ PP + GP+ GG G + PP PGL PG G P +P
Sbjct: 401 MGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLP-GPIG 459
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-GRANFPLGPGPEGPMA 316
P G G G PG P + P P QG G P GP GP+
Sbjct: 460 PKGEAGQKGVPGLPGVPGLLGPKGEPGI---------PGDQGLQGPPGIPGIGGPSGPIG 510
Query: 317 AMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSES 376
P G G G+ K PG VAGL PG P G G P P
Sbjct: 511 PPGIPGPKGEPGLPGPPGFPGIGK--PG-VAGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Query: 377 YSPGMTM 383
P M
Sbjct: 568 PGPPAVM 574
Score = 66.2 bits (160), Expect = 5e-11
Identities = 84/284 (29%), Positives = 109/284 (38%), Gaps = 43/284 (15%)
Query: 122 FQGPPGSQPSPHNPNAPMMGPHGQ--PFMSPRFPGGPR----PTLRMPSQPPA--GLPGS 173
F GP G + P A +GP G+ P +P G P P + P PP G PG
Sbjct: 355 FPGPKGDRGMGGVPGA--LGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGP 412
Query: 174 Q-------PLLPGAMEPSPRAQGHPSMGGPMQRVTPP--RGMAS-VGPQSYGGGMRPPPN 223
+ P P + P QG P G + V PP RG+ +GP+ G + P
Sbjct: 413 KGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAG-QKGVPG 471
Query: 224 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDS 282
PGL PG+ G IP P GPPG GP G P +P PG
Sbjct: 472 LPGVPGLLGPKGEPGIPGDQGLQGPPGIP-GIGGPSGPIGPPGIPGPKGEPGLPGPPGFP 530
Query: 283 TNSSENMYTIMNPIGQ-GA----GRANFPLGPGPEGPMAAMSAMEP-----HHVNGSLGS 332
+ + P G+ GA G+ P PGP GP + M P +G
Sbjct: 531 GIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGL 590
Query: 333 GDMDGL-PKSSPGAVAGLSNAPG--TPRDDGEMAAAGTFLHPFP 373
G +DG+ P + GA G + P P E+ A PFP
Sbjct: 591 G-IDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTA------PFP 627
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 77.0 bits (188), Expect = 3e-14
Identities = 86/298 (28%), Positives = 112/298 (37%), Gaps = 48/298 (16%)
Query: 82 EHSGEAKAFQDYSAAAAPSPVMGSMA---PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP 138
++ E Y P+P MG A G + S+ QGP G +P P P P
Sbjct: 78 QYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGE--QGPRG-EPGPRGPPGP 134
Query: 139 MMGPHGQPFMSPRFPGGPRPTLRMPSQP-PAGLPG-SQPLLPGAMEPSPRAQGHPSMGGP 196
P PG P ++ +P P G PG +P +PG M P A G P G
Sbjct: 135 -----------PGLPGHGIPGIK--GKPGPQGYPGVGKPGMPG-MPGKPGAMGMPGAKGE 180
Query: 197 MQRVTPPRGMASVGPQSYGGGMRPP-PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSS 255
+ + +GP G PP P+ L G G P GPG+ G P G+ P
Sbjct: 181 IGQ------KGEIGPMGIPGPQGPPGPHGLPGIGKPG---GPGLPGQ-PGPKGDRGPKGL 230
Query: 256 SSPGSYTGPPG--GGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLGPGPE 312
P GP G G G PG P + P M+ P+G G G+ PGP+
Sbjct: 231 PGPQGLRGPKGDKGFGMPGAPGVKGP-------PGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Query: 313 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG----AVAGLSNAPGTPRDDGEMAAAG 366
GP+ A G +G + G P PG G+ PG P GE G
Sbjct: 284 GPLGKPGAPGEPGPQGPIGVPGVQG-PPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPG 340
Score = 69.7 bits (169), Expect = 4e-12
Identities = 89/307 (28%), Positives = 106/307 (34%), Gaps = 53/307 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFM--SPRFPGGPRPTLRMPS 164
APG+ G + QGPPG P +G GQ + P FPGG + +P
Sbjct: 291 APGEPGPQGPIGVPGVQGPPG---------IPGIGKPGQDGIPGQPGFPGG-KGEQGLPG 340
Query: 165 QP-PAGLPG-SQPLLPGAMEP----------SPRAQ----GHPSMGGPMQR--------- 199
P P GLPG +P PG PR + G P +GGP
Sbjct: 341 LPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGP 400
Query: 200 VTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 257
+ PP + GP+ GG G + PP PGL PG G P +P
Sbjct: 401 MGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLP-GPIG 459
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-GRANFPLGPGPEGPMA 316
P G G G PG P + P P QG G P GP GP+
Sbjct: 460 PKGEAGQKGVPGLPGVPGLLGPKGEPGI---------PGDQGLQGPPGIPGIGGPSGPIG 510
Query: 317 AMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSES 376
P G G G+ K PG VAGL PG P G G P P
Sbjct: 511 PPGIPGPKGEPGLPGPPGFPGIGK--PG-VAGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Query: 377 YSPGMTM 383
P M
Sbjct: 568 PGPPAVM 574
Score = 66.2 bits (160), Expect = 5e-11
Identities = 84/284 (29%), Positives = 109/284 (38%), Gaps = 43/284 (15%)
Query: 122 FQGPPGSQPSPHNPNAPMMGPHGQ--PFMSPRFPGGPR----PTLRMPSQPPA--GLPGS 173
F GP G + P A +GP G+ P +P G P P + P PP G PG
Sbjct: 355 FPGPKGDRGMGGVPGA--LGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGP 412
Query: 174 Q-------PLLPGAMEPSPRAQGHPSMGGPMQRVTPP--RGMAS-VGPQSYGGGMRPPPN 223
+ P P + P QG P G + V PP RG+ +GP+ G + P
Sbjct: 413 KGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAG-QKGVPG 471
Query: 224 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDS 282
PGL PG+ G IP P GPPG GP G P +P PG
Sbjct: 472 LPGVPGLLGPKGEPGIPGDQGLQGPPGIP-GIGGPSGPIGPPGIPGPKGEPGLPGPPGFP 530
Query: 283 TNSSENMYTIMNPIGQ-GA----GRANFPLGPGPEGPMAAMSAMEP-----HHVNGSLGS 332
+ + P G+ GA G+ P PGP GP + M P +G
Sbjct: 531 GIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGL 590
Query: 333 GDMDGL-PKSSPGAVAGLSNAPG--TPRDDGEMAAAGTFLHPFP 373
G +DG+ P + GA G + P P E+ A PFP
Sbjct: 591 G-IDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTA------PFP 627
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 75.5 bits (184), Expect = 8e-14
Identities = 87/310 (28%), Positives = 106/310 (34%), Gaps = 62/310 (20%)
Query: 124 GPPGSQPSPHNP-------NAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPA-GLPGS-- 173
GPPG Q P P + MGPHG P PR P GP + P P G PG+
Sbjct: 1145 GPPGLQGLPGPPGEKGEVGDVGSMGPHGAP--GPRGPQGPTGSEGTPGLPGGVGQPGAVG 1202
Query: 174 ---------QPLLPGAME-PSPRAQ-------GHPSMGGPMQRVTPPR---GMASVGPQS 213
P PGA P P+ G GP + PP SVGP
Sbjct: 1203 EKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG 1262
Query: 214 YGGGMRPP-----------------PNSLAGPGLPAMNMGPGVRGPWAS--PSGNSIPYS 254
G + PP P + GPG P + PG GP PSG+
Sbjct: 1263 LPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREG 1322
Query: 255 SSSPGSYTGPPGGGGPPGT--PIMPSPGDSTNSSENMYTIMNPIGQ----GAGRANFPLG 308
G PG GPPG P+ E + I P+G+ GA P G
Sbjct: 1323 REGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPG 1382
Query: 309 P-GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPRDDGEMA 363
P GP G P G +G + G P + + G+ PG D G
Sbjct: 1383 PLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPG 1442
Query: 364 AAGTFLHPFP 373
G+ HP P
Sbjct: 1443 PIGSLGHPGP 1452
Score = 68.2 bits (165), Expect = 1e-11
Identities = 85/266 (31%), Positives = 96/266 (36%), Gaps = 46/266 (17%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQ-PFMSPRFPGGPRPTL--------------RMPSQPP 167
+GPPG Q P P G G+ F P GP L R P PP
Sbjct: 883 KGPPGHQGKDGRPGHP--GQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPP 940
Query: 168 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAG 227
G PG Q L PG +E A+G GP+ + P GP+ GG P P L G
Sbjct: 941 -GPPGEQGL-PG-LEGREGAKGELGPPGPLGKEGPAGLRGFPGPK--GGPGDPGPTGLKG 995
Query: 228 ----PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 283
PG N PG RGP G +P S S G GP G G G P P
Sbjct: 996 DKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGP-VGPAGKKGSRGERGPPGPTGKD 1054
Query: 284 NSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGS-GDM-DGLPK 340
I P+G PLG PG GP G GS GD D P
Sbjct: 1055 G-------IPGPLG--------PLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPP 1099
Query: 341 SSPGAVAGLSNAPGTPRDDGEMAAAG 366
PG + G + PG P DG G
Sbjct: 1100 GQPG-IRGPAGHPGPPGADGAQGRRG 1124
Score = 59.7 bits (143), Expect = 4e-09
Identities = 82/283 (28%), Positives = 98/283 (34%), Gaps = 45/283 (15%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMS----PRFPGGPRPTLRMPSQPPAGLPGSQPLLP 178
QG PG+ P P + P GP GQ + P G + L +P GLPG P
Sbjct: 748 QGKPGA-PGPRGEDGPE-GPKGQAGQAGEEGPPGSAGEKGKLGVP-----GLPG----YP 796
Query: 179 GAMEPSPRAQ-GHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGP 237
G P P+ G P GP+ +G + Q G R PP S G P P
Sbjct: 797 G--RPGPKGSIGFPGPLGPIGE----KGKSGKTGQPGLEGERGPPGSRGERGQPGATGQP 850
Query: 238 GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS----PGDSTNSSENMYT-- 291
G +G IP PG GPPG GP G P PG E +
Sbjct: 851 GPKGDVGQDGAPGIPGEKGLPG-LQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQ 909
Query: 292 --------IMNPIGQGAGRANFPLG----PGPEGPMAAMSAMEPHHVNGSLGS-GDMDGL 338
++ P QG PLG PGP GP G+ G G L
Sbjct: 910 TGPPGPAGVLGP--QGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPL 967
Query: 339 PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP-SESYSPG 380
K P + G G P D G G P P + SPG
Sbjct: 968 GKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG 1010
Score = 55.5 bits (132), Expect = 8e-08
Identities = 84/314 (26%), Positives = 96/314 (30%), Gaps = 67/314 (21%)
Query: 85 GEAKAFQDYSAAAAPSPVMGSMA--PGDTMAAGSMAAGFFQGPPG--SQPSPHNPNAP-- 138
G +FQ A A SM PG G G PG + P P
Sbjct: 456 GPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRG 515
Query: 139 MMGPHGQPFMSPRF--PGG------PRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQ-G 189
+ GPHG P + PG P T + GLPG LPG E R G
Sbjct: 516 LQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPG----LPG--EKGQRGDFG 569
Query: 190 HPSMGGPMQRVTPPRGMASVGPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRG 241
H GP GP G G R P PG+ ++ PG +G
Sbjct: 570 HVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKG 629
Query: 242 PWASPS--------GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYTI 292
P GN P G PG GPPG P +P PG
Sbjct: 630 NVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSD---------- 679
Query: 293 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNA 352
P+G PG EGP A P GS G P P V G S
Sbjct: 680 -GPLGH----------PGHEGPTGEKGAQGPP------GSAGPPGYP--GPRGVKGTSGN 720
Query: 353 PGTPRDDGEMAAAG 366
G + GE G
Sbjct: 721 RGLQGEKGEKGEDG 734
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/232 (29%), Positives = 84/232 (36%), Gaps = 36/232 (15%)
Query: 75 PDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHN 134
P +R H G + A P P PG T G M A +GPPG
Sbjct: 1309 PGKRGPSGHMGREGREGEKGAKGEPGP---DGPPGRT---GPMGA---RGPPGRVGPEGL 1359
Query: 135 PNAPMMGPHGQPFM--SPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPS 192
P GP G+P + +P G P P P+GLPG L G P +GH
Sbjct: 1360 RGIP--GPVGEPGLLGAPGQMGPPGPL------GPSGLPG----LKGDTGPKGE-KGHIG 1406
Query: 193 MGGPMQRVTPPRGMASVGPQSYGGGMRPP-PNSLAGPGLPAMNMG----PGVRGPWASPS 247
+ G + PP G Q G PP P GP P ++G PGV GP
Sbjct: 1407 LIG---LIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKG 1463
Query: 248 GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQG 299
P S P TGP GPPG P P+ + P+ +G
Sbjct: 1464 SKGSP-GSMGPRGDTGP---AGPPGPPGAPAELHGLRRRRRFVPVPLPVVEG 1511
Score = 30.4 bits (67), Expect = 2.8
Identities = 52/219 (23%), Positives = 66/219 (30%), Gaps = 73/219 (33%)
Query: 220 PPPNSLAGPGLPAM-NMGPGVRGPWASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIM 276
P G PA+ G GP +P + S PG + G PG GP G P +
Sbjct: 370 PGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGI 429
Query: 277 P-------------------------SPGDSTNSSENMYTIM----------NPIG---- 297
P P S ++ + P+G
Sbjct: 430 PGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGR 489
Query: 298 ------------QGAGRANFPLGP----GPEGPMAAMSAMEPHHVNGSLG-------SGD 334
+G A P GP GP GP + M +G+ G GD
Sbjct: 490 PGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGD 549
Query: 335 --MDGLPKSSPGAVA-----GLSNAPGTPRDDGEMAAAG 366
DGLP PG G PG P +DGE A G
Sbjct: 550 RGFDGLP-GLPGEKGQRGDFGHVGQPGPPGEDGERGAEG 587
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 75.1 bits (183), Expect = 1e-13
Identities = 85/281 (30%), Positives = 100/281 (35%), Gaps = 53/281 (18%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAME 182
+GPPG P P G HGQP P GP RM P GLPG PG
Sbjct: 88 RGPPGPPGFPGKPGMGKPGLHGQPG-----PAGPPGFSRMGKAGPPGLPGKVGP-PG--- 138
Query: 183 PSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGP 242
P +G P + G PP GP G + P + PG P PG +G
Sbjct: 139 -QPGLRGEPGIRGDQGLRGPPGPPGLPGPS--GITIPGKPGAQGVPGPPGFQGEPGPQGE 195
Query: 243 WASPSGNSIPYSSS--SPGSYTGPPGGGGPPGTPIMP---------------SPGDSTNS 285
P + + PG G PG GG PG P +P +PGD S
Sbjct: 196 PGPPGDRGLKGDNGVGQPG-LPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGES 254
Query: 286 SENMYTIMNPIGQ-GAGRANFPLG------------PGPEGPMAAM---SAMEPHHVNGS 329
+ P G+ GA P G PGP+GP A P + G
Sbjct: 255 GPP--GVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGP 312
Query: 330 LGSGDMDGLP----KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G M GLP P V GL G P +DGE G
Sbjct: 313 TGYG-MPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQG 352
Score = 71.2 bits (173), Expect = 1e-12
Identities = 87/287 (30%), Positives = 105/287 (36%), Gaps = 51/287 (17%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNP-NAPMMGPHGQPFMSPRFPGGPR 157
P P G PG A G FQG PG Q P P + + G +G P PG P
Sbjct: 164 PGP-SGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNG--VGQPGLPGAPG 220
Query: 158 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG----MASVGPQS 213
+ + P GLPG L ++ P A G GP V PRG + GP
Sbjct: 221 ---QGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGP-PGVPGPRGEPGAVGPKGPPG 276
Query: 214 YGGGMRPPPNSLAGPGLPAMNMG-PGVRGP--WASPSGNSIPYSSSSPGSYTGPPGGGGP 270
G P L GP P+ G PG RGP P+G +P GP G GP
Sbjct: 277 VDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMP-------GLPGPKGDRGP 329
Query: 271 PGTPIM----PSPGDSTNSSENMYTIMNPIGQGA-----GRANFPLGPGPEGPMAAMSAM 321
G P + PG+ E P G G G A P GP GP
Sbjct: 330 AGVPGLLGDRGEPGEDGEPGE-----QGPQGLGGPPGLPGSAGLPGRRGPPGP------- 377
Query: 322 EPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G G G+P + G +GL+ PG P + G A G
Sbjct: 378 -----KGEAGPGGPPGVPGIRGDQGP-SGLAGKPGVPGERGLPGAHG 418
Score = 65.5 bits (158), Expect = 8e-11
Identities = 76/256 (29%), Positives = 87/256 (33%), Gaps = 65/256 (25%)
Query: 141 GPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRV 200
GP G PF G L MP PLLP ++ P G P GP
Sbjct: 50 GPVGPPFRE-----GKGQYLEMPL----------PLLPMDLKGEPGPPGKPGPRGP---P 91
Query: 201 TPP-----RGMASVGPQSYGGGMRPP-------------PNSLAGPGLPAMNMGPGVRGP 242
PP GM G G PP P + PG P + PG+RG
Sbjct: 92 GPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGD 151
Query: 243 WA-----------SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMY 290
PSG +IP + G GPPG G PG P PGD +N
Sbjct: 152 QGLRGPPGPPGLPGPSGITIPGKPGAQG-VPGPPGFQGEPGPQGEPGPPGDRGLKGDN-- 208
Query: 291 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 350
G G+ P PG G P LG +DGLP +PG G S
Sbjct: 209 --------GVGQPGLPGAPGQGGAPGPPGLPGP----AGLGKPGLDGLP-GAPGD-KGES 254
Query: 351 NAPGTPRDDGEMAAAG 366
PG P GE A G
Sbjct: 255 GPPGVPGPRGEPGAVG 270
Score = 64.7 bits (156), Expect = 1e-10
Identities = 58/162 (35%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 124 GPPGSQ--PSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAM 181
G PG + P H P P GP G+P + R PGGP + + GLPG PG
Sbjct: 406 GVPGERGLPGAHGPPGPT-GPKGEPGFTGR-PGGPGVAGALGQKGDLGLPGQ----PGLR 459
Query: 182 EPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRG 241
PS G P + GP +GPQ G P L GP PG G
Sbjct: 460 GPS----GIPGLQGPA---------GPIGPQGLPGLKGEP--GLPGPPGEGRAGEPGTAG 504
Query: 242 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 283
P P +P SPG TGPPG GPPG P P D T
Sbjct: 505 PTGPPG---VP---GSPG-ITGPPGPPGPPGPPGAPGAFDET 539
Score = 63.2 bits (152), Expect = 4e-10
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 43/253 (16%)
Query: 123 QGPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAM 181
QGP G++ P P ++GP G PG P P + PAG+PG LL
Sbjct: 292 QGPSGAKGEPGTRGPPGLIGPTGYGM-----PGLPGPK---GDRGPAGVPG---LLGDRG 340
Query: 182 EPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRG 241
EP G P GP PP S G G P P AGPG P PG+RG
Sbjct: 341 EPGE--DGEPGEQGPQGLGGPPGLPGSAGLPGRRGP--PGPKGEAGPGGPPGV--PGIRG 394
Query: 242 PWASPSGNS----IPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPI 296
PSG + +P PG++ GPPG GP G P PG + +
Sbjct: 395 D-QGPSGLAGKPGVPGERGLPGAH-GPPGPTGPKGEPGFTGRPGGPG--------VAGAL 444
Query: 297 GQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP---------KSSPGAVA 347
GQ G P PG GP P G G + G P ++ A
Sbjct: 445 GQ-KGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTA 503
Query: 348 GLSNAPGTPRDDG 360
G + PG P G
Sbjct: 504 GPTGPPGVPGSPG 516
Score = 57.8 bits (138), Expect = 2e-08
Identities = 75/276 (27%), Positives = 94/276 (34%), Gaps = 43/276 (15%)
Query: 108 PGDTMAAGSMAAGFFQGPPG----------SQPSPHNPNAP-----MMGPHGQPFMSPRF 152
PG +G+ +GPPG P P P ++G G+P
Sbjct: 289 PGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGE- 347
Query: 153 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQ 212
PG P P GLPGS LPG P P +G GG P G+ +
Sbjct: 348 PGEQGP---QGLGGPPGLPGSAG-LPGRRGP-PGPKGEAGPGG-------PPGVPGIRGD 395
Query: 213 SYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 272
G+ P GLP + PG GP P P G+ G G G PG
Sbjct: 396 QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGA-LGQKGDLGLPG 454
Query: 273 TPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 332
P + P + + PIG G PG GP A EP G+ G
Sbjct: 455 QPGLRGP----SGIPGLQGPAGPIGP-QGLPGLKGEPGLPGPPGEGRAGEP----GTAGP 505
Query: 333 GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTF 368
G+P S G++ PG P G A G F
Sbjct: 506 TGPPGVPGS-----PGITGPPGPPGPPGPPGAPGAF 536
Score = 34.7 bits (78), Expect = 0.15
Identities = 34/119 (28%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 263 GPPGGGGPPGTPIMPS-PGDSTNSSENMYTIMNPIG----QGAGRANFPLGPGPEGPMAA 317
GPPG GP G P P PG ++ P G G+A P PG GP
Sbjct: 80 GPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQ 139
Query: 318 MSAMEPHHVNGS---LGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
+ G G GLP S + G A G P G G P P
Sbjct: 140 PGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGP 198
Score = 33.9 bits (76), Expect = 0.25
Identities = 35/124 (28%), Positives = 37/124 (29%), Gaps = 32/124 (25%)
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAA 317
P GP G GPPG P P G G+ PGP GP
Sbjct: 81 PPGKPGPRGPPGPPGFPGKP---------------------GMGKPGLHGQPGPAGPPGF 119
Query: 318 MSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSES 376
+G GLP K P GL PG D G G P PS
Sbjct: 120 ----------SRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGI 169
Query: 377 YSPG 380
PG
Sbjct: 170 TIPG 173
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 74.7 bits (182), Expect = 1e-13
Identities = 71/233 (30%), Positives = 79/233 (33%), Gaps = 26/233 (11%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQGPP---GSQPSPHNPNAPMMGPHGQPFMSPRFPG 154
P G GD + S + G QGPP G+QP P P P G P P
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQ--GPPPPPGKPQGPPPQGGNKPQ 213
Query: 155 GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSY 214
GP P + PP G SQ A P + QG P GG + PP GP
Sbjct: 214 GPPPPGKPQGPPPQGDNKSQ----SARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 269
Query: 215 GGGMR---PPPNSLAGPGLPAMNMGPGVRGPWASPSG------NSIPYSSSSPGSYTGPP 265
GG PPP GP + R P P G N PG GPP
Sbjct: 270 GGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 329
Query: 266 GGGG-------PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 311
GG PPG P P P + S P G N P GP P
Sbjct: 330 PQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPP 382
Score = 73.2 bits (178), Expect = 4e-13
Identities = 81/292 (27%), Positives = 91/292 (31%), Gaps = 32/292 (10%)
Query: 91 QDYSAAAAPSPVMGSM--AP---GDTMAAGSMAAGFFQGPPGSQP-SPHNPNAPMMGPHG 144
+D S +PS + G+ AP G+ G QGPP P P P P G
Sbjct: 21 EDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 80
Query: 145 QPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPR 204
P P GP P + PP G P P + QG P GG + PP
Sbjct: 81 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP-----RSPPGKPQGPPPQGGNQPQGPPPP 135
Query: 205 GMASVGPQSYGGGM---RPPPNSLAGPGLPAMNMGPGVRGPWASP------SGNSIPYSS 255
GP GG PPP GP N R P P GN
Sbjct: 136 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPP 195
Query: 256 SSPGSYTGPPGGGG-------PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG 308
PG GPP GG PPG P P P S P G N P G
Sbjct: 196 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQG 255
Query: 309 PGPEGPMAAMSAMEPHHVNGSLG---SGDMDGLPKSSPGAVAGLSNAPGTPR 357
P P P P N G G G P + PG P+
Sbjct: 256 PPP--PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ 305
Score = 63.2 bits (152), Expect = 4e-10
Identities = 58/192 (30%), Positives = 68/192 (35%), Gaps = 22/192 (11%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQGPP---GSQPSPHNPNAPMMGPHGQPFMSPRFPG 154
P G GD + + + G QGPP G+QP P P P G P P
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ--GPPPPPGKPQGPPPQGGNKPQ 275
Query: 155 GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSY 214
GP P + PP G S+ + P + QG P GG + PP GP
Sbjct: 276 GPPPPGKPQGPPPQGGSKSR----SSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 331
Query: 215 GGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTG------PPGGG 268
GG N GP P GP +G S S S P P G PP G
Sbjct: 332 GG------NKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAG 385
Query: 269 GPPGTPIMPSPG 280
G P P P G
Sbjct: 386 GNPQQPQAPPAG 397
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 74.3 bits (181), Expect = 2e-13
Identities = 103/347 (29%), Positives = 118/347 (34%), Gaps = 70/347 (20%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQ--------PSPHNPNAPMMGPHGQP 146
AA P P + PG A G+ QGP GS+ P P P A GP G P
Sbjct: 330 AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGP-AGAAGPAGNP 388
Query: 147 FM-----------SPRFPGGPR-PTLRMPSQP--PAGLPG-----SQPLLPGAM------ 181
+P G P P R PS P P G PG +P PG+
Sbjct: 389 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Query: 182 -EPSP-RAQGHPSMGGPM----QRVTP-PRGMASVGPQSYGGGMR--PPPNSLAGPGLPA 232
EP P QG P G R P P G+ + G G R P + +AGP PA
Sbjct: 449 GEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA 508
Query: 233 MNMG-PGVRGPWASPSGNSIPYSSSSPGSY--------------TGPPGGGGPPGTPIMP 277
G PG GP SP P + PG+ TGPPG G G P P
Sbjct: 509 GERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 568
Query: 278 SPGDSTNSSENMYTIMNPIGQG-----AGRANFPLGPGPEGPM---AAMSAMEPHHVNGS 329
P + P G AG P PG GP A P G
Sbjct: 569 GP-PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 627
Query: 330 LGSGDMDGLPKSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFPS 374
G G P SPG + G + PG GE G P PS
Sbjct: 628 AGERGEQG-PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS 673
Score = 72.0 bits (175), Expect = 8e-13
Identities = 89/291 (30%), Positives = 103/291 (35%), Gaps = 52/291 (17%)
Query: 94 SAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMGPHGQPFMS 149
S A P+ G APGD G F GPPG+ P P G G P
Sbjct: 787 SGPAGPTGARG--APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP--G 842
Query: 150 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 209
P P GP + P G G++ G+ P P A G P G RV PP
Sbjct: 843 PAGPAGPPGPIGNVGAP--GAKGAR----GSAGP-PGATGFPGAAG---RVGPP------ 886
Query: 210 GPQSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 268
GP G PP GP GP G GP P G P P G PG
Sbjct: 887 GPSGNAGPPGPP-----GPAGKEGGKGPRGETGPAGRP-GEVGPPGPPGPAGEKGSPGAD 940
Query: 269 GPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP------EGPMAAMSAME 322
GP G P P P ++ GQ G FP PGP +GP A
Sbjct: 941 GPAGAPGTPGP----QGIAGQRGVVGLPGQ-RGERGFPGLPGPSGEPGKQGPSGASGERG 995
Query: 323 PHHVNGSLGSGDMDGLP-----KSSPGAVA--GLSNAPGTPRDDGEMAAAG 366
P G +G + G P + +PGA G +PG D GE AG
Sbjct: 996 P---PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG 1043
Score = 70.5 bits (171), Expect = 2e-12
Identities = 80/278 (28%), Positives = 92/278 (33%), Gaps = 39/278 (14%)
Query: 124 GPPGSQPSPHNPNAP-MMGPHGQPFMSPRFPGGPRPT----------LRMPSQP--PAGL 170
GP G SP AP MGP G P R PG P P P P PAG
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGR-PGAPGPAGARGNDGATGAAGPPGPTGPAGP 342
Query: 171 PG----------SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP 220
PG + P P E +G P GP P G Q G
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG-AAGPAGNPGADGQPGAKGANG 401
Query: 221 PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPS 278
P PG P G +GP P +PGS TG G GP G P
Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG 461
Query: 279 PGD-----STNSSENMYTIMNPIGQ--GAGRANFPLG---PGPEGPMAAMSAMEPHHVNG 328
P + P G+ G G FP GP+GP + P G
Sbjct: 462 PAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
Query: 329 SLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
S G G PGA GL+ +PG+P DG+ G
Sbjct: 522 SPGEAGRPG-EAGLPGA-KGLTGSPGSPGPDGKTGPPG 557
Score = 70.5 bits (171), Expect = 2e-12
Identities = 93/311 (29%), Positives = 114/311 (36%), Gaps = 53/311 (17%)
Query: 92 DYSAAAAPSP--VMGSMAP----GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP----MMG 141
D A P P V G P G A G GPPG + P + P + G
Sbjct: 444 DTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAG 503
Query: 142 PHGQPFM--SPRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQ-GHPSMGGPM 197
P G SP P GP+ + +P AGLPG++ L P P + G P G
Sbjct: 504 PKGPAGERGSPG-PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 562
Query: 198 QRVTPP-----RGMASV----GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVR 240
R PP RG A V GP+ G G+ PP ++ G G
Sbjct: 563 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP 622
Query: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS----PGDSTNSSENMYTIMNPI 296
GP A P+G + + G PG GPPG P PGD + P
Sbjct: 623 GP-AGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGD----------LGAPG 671
Query: 297 GQGA-GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGT 355
GA G FP G +GP P NG+ G+ G +PGA G APG
Sbjct: 672 PSGARGERGFPGERGVQGPPGPAG---PRGANGAPGNDGAKG-DAGAPGA-PGSQGAPGL 726
Query: 356 PRDDGEMAAAG 366
GE AAG
Sbjct: 727 QGMPGERGAAG 737
Score = 68.6 bits (166), Expect = 9e-12
Identities = 92/327 (28%), Positives = 114/327 (34%), Gaps = 54/327 (16%)
Query: 97 AAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGP 156
+ P P+ S G G+ FQGPPG +P + P MGP G P P G
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG-EPGEPGASGP-MGPRGPP--GPPGKNGD 231
Query: 157 RPTLRMPSQP-PAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMAS-VGPQ 212
P +P G PG Q LPG P +GH G + +G A GP+
Sbjct: 232 DGEAGKPGRPGERGPPGPQGARGLPGT-AGLPGMKGHRGFSG----LDGAKGDAGPAGPK 286
Query: 213 SYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP 270
G G P + GLP PG GP A GN ++ P TGP G G
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGP-AGARGNDGATGAAGPPGPTGPAGPPGF 345
Query: 271 PGT------------------------PIMPSPGDSTNSSENMYTIMNPIGQG------- 299
PG P P P + + N P +G
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405
Query: 300 AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDG--LPKSSPGAVAGLSNAPGTPR 357
AG FP GP GP P +G G+ G K PG V G+ PG
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPV-GVQGPPGPAG 464
Query: 358 DDGEMAAAG----TFLHPFPSESYSPG 380
++G+ A G T L P E PG
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPG 491
Score = 66.2 bits (160), Expect = 5e-11
Identities = 104/367 (28%), Positives = 123/367 (33%), Gaps = 92/367 (25%)
Query: 96 AAAPSPVMGSMAPGDTMAAGSM----AAGF-----FQGPPGSQPSPHNPNAPMMGPHGQP 146
A P P+ APG A GS A GF GPPG + P P GP G+
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP--GPAGKE 904
Query: 147 F-MSPRFPGGP--RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP 203
PR GP RP P PP P + PGA P+ G P GP Q +
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPG--PAGEKGSPGADGPA----GAPGTPGP-QGIAGQ 957
Query: 204 RGMASV-------------GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGP 242
RG+ + GP G G R PP + PGL PG G
Sbjct: 958 RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGP---PGESGR 1014
Query: 243 WASPSGNSIPYSSSSPGSY-----TGPPGGGGPPGTPIMPSP-GDSTNSSENMYT----- 291
+P P SPG+ TGP G G PG P P P G + S + T
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Query: 292 --IMNPIG-------------------QG----AGRANF---------PLGPGPEGPMAA 317
+ P+G QG G F P PG +GP A
Sbjct: 1075 AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 1134
Query: 318 MSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESY 377
P GS G+ DGL PG + G G D G + G P P
Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGL-NGLPGPI-GPPGPRGRTGDAGPVGPPGPPGPPGPPGPP 1192
Query: 378 SPGMTMS 384
S G S
Sbjct: 1193 SAGFDFS 1199
Score = 65.5 bits (158), Expect = 8e-11
Identities = 78/259 (30%), Positives = 98/259 (37%), Gaps = 43/259 (16%)
Query: 125 PPGSQPSPHNPNAPMMGPHGQPF-MSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP 183
P GS+ + GP G PR P GP P + G+PG QP LPG P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGP------PGRD--GIPG-QPGLPGPPGP 146
Query: 184 SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGP 242
P G P +GG P+ +S GG P P +GP GLP PG +G
Sbjct: 147 -PGPPGPPGLGGNF----APQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG- 200
Query: 243 WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGR 302
+ P G PG+ +GP G GPPG PG + + E AG+
Sbjct: 201 FQGPPG-----EPGEPGA-SGPMGPRGPPG-----PPGKNGDDGE------------AGK 237
Query: 303 ANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA-VAGLSNAPGTPRDDGE 361
P GP GP A + G G GL + A AG PG+P ++G
Sbjct: 238 PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA 297
Query: 362 MAAAGTFLHPFPSESYSPG 380
G P E PG
Sbjct: 298 PGQMGP--RGLPGERGRPG 314
Score = 65.5 bits (158), Expect = 8e-11
Identities = 89/313 (28%), Positives = 113/313 (36%), Gaps = 58/313 (18%)
Query: 99 PSPVMGSMAPG-----DTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRF- 152
P + G+ AP D + G ++ GP G + P P AP GP G F P
Sbjct: 152 PPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAP--GPQG--FQGPPGE 207
Query: 153 PGGPRPTLRMPSQPPAGLPGS--------QPLLPGAM-EPSPR-AQGHPSMGGPMQRVTP 202
PG P + M + P G PG +P PG P P+ A+G P G + +
Sbjct: 208 PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG-LPGMKG 266
Query: 203 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS-- 260
RG + + G P PG P N PG GP P P + G+
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGE---PGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 323
Query: 261 ------YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG----PG 310
GPPG GP G P P + + QG + P G PG
Sbjct: 324 NDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG---------PQGPRGSEGPQGVRGEPG 374
Query: 311 PEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAGTF 368
P GP A G G+ DG P K + GA G++ APG P G G
Sbjct: 375 PPGPAGAA---------GPAGNPGADGQPGAKGANGA-PGIAGAPGFPGARGPSGPQGPG 424
Query: 369 LHPFP-SESYSPG 380
P P S PG
Sbjct: 425 GPPGPKGNSGEPG 437
Score = 60.8 bits (146), Expect = 2e-09
Identities = 81/312 (25%), Positives = 101/312 (32%), Gaps = 41/312 (13%)
Query: 85 GEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGP---------PGSQPSPHNP 135
G A + A P P + G+ AGS GP PG Q P +
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL 667
Query: 136 NAPMMGPHG----------QPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSP 185
AP GP G + P P GPR P A P PG+ + +P
Sbjct: 668 GAP--GPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS-QGAP 724
Query: 186 RAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGM-RPPPNSLAGPGLPAMNMGPGVRGPWA 244
QG P G P GP+ G + L GP +GP GP
Sbjct: 725 GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP------IGPP--GPAG 776
Query: 245 SPS--GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGR 302
+P G S P + P G PG G PG P + P GA
Sbjct: 777 APGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG 836
Query: 303 ANFPLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSNAPG 354
P GP GP GP+ + A GS G G P + P +G + PG
Sbjct: 837 DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 896
Query: 355 TPRDDGEMAAAG 366
P G+ G
Sbjct: 897 PPGPAGKEGGKG 908
Score = 49.7 bits (117), Expect = 4e-06
Identities = 63/203 (31%), Positives = 73/203 (35%), Gaps = 39/203 (19%)
Query: 166 PPAGLPGSQ--PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPN 223
P A +P + P+ P E SP Q + GP + T PRG P+ G PP
Sbjct: 82 PGAEVPEGECCPVCPDGSE-SPTDQETTGVEGP-KGDTGPRG-----PRGPAG----PPG 130
Query: 224 SLAGPGLPAMNMGPGVRGPWASPS--GNSIP-----YSSSSPG--SYTGPPGGGGPPGTP 274
PG P + PG GP P GN P Y S G S GP G GP G P
Sbjct: 131 RDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP 190
Query: 275 IMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSG 333
P +PG P G+ P PG GPM P NG G
Sbjct: 191 GPPGAPGPQ--------GFQGPPGE-------PGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 334 DMDGLP-KSSPGAVAGLSNAPGT 355
G P + P G PGT
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGT 258
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 74.3 bits (181), Expect = 2e-13
Identities = 83/285 (29%), Positives = 100/285 (35%), Gaps = 54/285 (18%)
Query: 122 FQGPPGSQPSPHNPNAP----------MMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGL- 170
F GPPG P P MGP G P PR P G P P PP G+
Sbjct: 1220 FPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPP--GPRGPSGA-PGADGPQGPPGGIG 1276
Query: 171 -PGS-----------QPLLPG-AMEPSPRAQ-GHPSMGGPMQRVTPP--RG-------MA 207
PG+ +P LPG P P+ + G GP PP +G
Sbjct: 1277 NPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKG 1336
Query: 208 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 267
S GP + G PP PG + PG +G P P + PG +GPPG
Sbjct: 1337 SPGPVGFPGDPGPPGE----PGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP-SGPPGK 1391
Query: 268 GGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVN 327
GPPG P P ++ + P G+ GP GP A P +
Sbjct: 1392 RGPPG-PAGPEGRQGEKGAKGEAGLEGPPGK----------TGPIGPQGAPGKPGPDGLR 1440
Query: 328 GSLGSGDMDGLPKS-SPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 371
G G GLP S P G PG P G+ G HP
Sbjct: 1441 GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHP 1485
Score = 72.8 bits (177), Expect = 5e-13
Identities = 87/273 (31%), Positives = 102/273 (37%), Gaps = 37/273 (13%)
Query: 94 SAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPG--SQPSPHNPNAPM--MGPHGQPFMS 149
S AA P G PGD GS F G PG +P P + P G G+P +
Sbjct: 1317 SGAAGPPGPKGP--PGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT 1374
Query: 150 PRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMAS 208
G P PT +P P+G PG + PG P R QG G PP
Sbjct: 1375 ----GSPGPT----GEPGPSGPPGKRGP-PGPAGPEGR-QGEKGAKGEAGLEGPPGKTGP 1424
Query: 209 VGPQSYGGGMRPPPNSLAG----------PGLPAMNMGPGVRGPWASPS--GNSIPYSSS 256
+GPQ G +P P+ L G PG P + PG GP P G+S P
Sbjct: 1425 IGPQGAPG--KPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEK 1482
Query: 257 S-PG--SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG 313
PG GPPG G G +P P S+ I P G G P PGP G
Sbjct: 1483 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQ-GITGPSGP-IGPPGPPGLPGPPG 1540
Query: 314 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 346
P A + P G G G P PG V
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGPPG-PPGPPGEV 1572
Score = 67.8 bits (164), Expect = 2e-11
Identities = 78/274 (28%), Positives = 92/274 (33%), Gaps = 56/274 (20%)
Query: 124 GPPG--SQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ------- 174
GPPG + P P GP+G P P P G + L +P P G PG Q
Sbjct: 832 GPPGPRGEDGPEGPKG-RGGPNGDP--GPLGPPGEKGKLGVPGLP--GYPGRQGPKGSIG 886
Query: 175 -PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAM 233
P PGA +G P GP + P GP+ G P NS
Sbjct: 887 FPGFPGA-NGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNS--------- 936
Query: 234 NMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYTI 292
G GP A P G P P + GP G GPPG +P PG
Sbjct: 937 ----GGDGP-AGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQ----------- 980
Query: 293 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG--AVAGLS 350
G F GP GP + P G +G G P PG + GL+
Sbjct: 981 -------RGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG-PPGPPGEQGLPGLA 1032
Query: 351 NAPGTPRDDGEMAAAG----TFLHPFPSESYSPG 380
GT D G G L FP + PG
Sbjct: 1033 GKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPG 1066
Score = 65.9 bits (159), Expect = 6e-11
Identities = 88/297 (29%), Positives = 104/297 (35%), Gaps = 65/297 (21%)
Query: 109 GDTMAAGSMAAGFFQGPPG--------SQPSPHNPNAPMMGPHGQPFM-------SPR-F 152
G+ GS QGPPG QP P + GP GQ + PR F
Sbjct: 1162 GEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEP-GPRGQQGLFGQKGDEGPRGF 1220
Query: 153 PGGPRPTLRMPSQPPAGLPGS-----QPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGM 206
PG P P P G G Q PG P PR G P GP PP G+
Sbjct: 1221 PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP--PGPRGPSGAPGADGPQG---PPGGI 1275
Query: 207 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPW-----ASPSGNSIPYSSSSPGSY 261
+ G G + P PGLP PG +G + PSG + P P
Sbjct: 1276 GNPGAV----GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGD 1331
Query: 262 TGPPGGGGPPGTPIMPS-------------PGDSTNSSENMYTIMNPIGQGAGRANFPLG 308
GP G GP G P P PGD + E T +P G + P G
Sbjct: 1332 DGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT-GSPGPTGEPGPSGPPG 1390
Query: 309 ----PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDG 360
PGP GP G+ G ++G P K+ P G APG P DG
Sbjct: 1391 KRGPPGPAGPEGRQGE------KGAKGEAGLEGPPGKTGP---IGPQGAPGKPGPDG 1438
Score = 64.3 bits (155), Expect = 2e-10
Identities = 85/299 (28%), Positives = 98/299 (32%), Gaps = 38/299 (12%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPN-APMMGPHGQPFM-SPRFPGGPRPTLRMPS- 164
PG A G GPPG SP A GP G P P+ P GP P
Sbjct: 1065 PGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGE 1124
Query: 165 ---QPPAGLPGSQ-PL-LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMR 219
Q PAG G Q P+ LPG P G P G + P S G + G
Sbjct: 1125 KGPQGPAGRDGLQGPVGLPGPAGPV----GPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG 1180
Query: 220 P--PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP 277
P P + PG + PG RG G P + GPPG G G P P
Sbjct: 1181 PTGPQGPIGQPGPSGADGEPGPRGQ----QGLFGQKGDEGPRGFPGPPGPVGLQGLPGPP 1236
Query: 278 SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDG 337
T M P +G A P GP+GP + G G G
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGA--PGADGPQGPPGGIGNPGAVGEKGEPGEAGEPG 1294
Query: 338 LP----------------KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
LP +S P AG G P DDG + G FP + PG
Sbjct: 1295 LPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV--GFPGDPGPPG 1351
Score = 63.5 bits (153), Expect = 3e-10
Identities = 68/226 (30%), Positives = 89/226 (39%), Gaps = 53/226 (23%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQ--PSPHNPN-----------APMMGPHGQ-----PFMS 149
PG T + G GPPG + P P P A + GP G+ P +
Sbjct: 1371 PGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGA 1430
Query: 150 PRFPG--------GPRPTLRMPSQP-PAGLPGSQ--PLLPGAMEPS-PRAQ-GHPSMGGP 196
P PG GP +P P P G PG P LPG S P+ + GHP + G
Sbjct: 1431 PGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIG- 1489
Query: 197 MQRVTPP--------RGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPW 243
+ PP RG+ GPQ G G+ P + PG P + PG +G
Sbjct: 1490 --LIGPPGEQGEKGDRGLP--GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGA- 1544
Query: 244 ASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENM 289
G+S P + GPPG GPPG I P P ++ + N+
Sbjct: 1545 ---KGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNI 1587
Score = 63.2 bits (152), Expect = 4e-10
Identities = 92/352 (26%), Positives = 108/352 (30%), Gaps = 77/352 (21%)
Query: 99 PSPVMGSMAP-GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPR 157
P+ G P G T G GP G P PN P GP G P P+ P GP
Sbjct: 914 PTGPRGERGPRGITGKPGPKGNSGGDGPAGP-PGERGPNGPQ-GPTGFP--GPKGPPGPP 969
Query: 158 PTLRMPSQP-------------PAGLPGSQPLLPGAMEPSPRAQ-GHPSMGGPMQRVTPP 203
+P P P G PG E P + GHP GP P
Sbjct: 970 GKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP 1029
Query: 204 RGMASV-------GPQSYGGGMRPP-----------PNSLAGPGLPAMNMGPGVRGPWAS 245
G+A GP G PP P + GL PG GP S
Sbjct: 1030 -GLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGS 1088
Query: 246 PSGNSIPYSSSSPGSYTGPPGGGGPPGT-----------PIMPSPGDSTNSSENMYTIMN 294
P G P ++ P G PG GPPG P P+ D +
Sbjct: 1089 P-GERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAG 1147
Query: 295 PIG-QGAGRANFPLG----------------PGPEGPMAAMSAMEPHHVNGSLGSGDMDG 337
P+G G +G PGP GP + P +G G G
Sbjct: 1148 PVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQG 1207
Query: 338 L--------PKSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 379
L P+ PG GL PG P + GE G P P P
Sbjct: 1208 LFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Score = 55.5 bits (132), Expect = 8e-08
Identities = 79/281 (28%), Positives = 95/281 (33%), Gaps = 57/281 (20%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMSPR-FPGGPRPTLRMPSQPPAGLPGSQPLLPGAME 182
GPPGS P +GP G PR G P P + + AG G++ + PG
Sbjct: 574 GPPGSGGLKGEPGD--VGPQG-----PRGVQGPPGPAGKPGRRGRAGSDGARGM-PGQTG 625
Query: 183 PS-----------PRAQGHPSMGGPMQRVTPP-----RGM-ASVGPQSYGG--------G 217
P P +GH GP PP RG VGP+ G G
Sbjct: 626 PKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLG 685
Query: 218 MRPPPNSLAGPGLPAMNMGPGVRG---PWASPS-----GNSIPYSSSSPGSYTGPPGGGG 269
+ PP PG+ M+ PG +G P P GN P GPPG G
Sbjct: 686 PKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKG 745
Query: 270 P---PGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHH 325
P PG P MP GQG P+G PGP G A
Sbjct: 746 PLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGI---RG 802
Query: 326 VNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
+ G+ G DG P G G D GE+ G
Sbjct: 803 LKGTKGEKGEDGFP--------GFKGDMGIKGDRGEIGPPG 835
Score = 47.0 bits (110), Expect = 3e-05
Identities = 74/260 (28%), Positives = 88/260 (33%), Gaps = 46/260 (17%)
Query: 142 PHGQPFMSPRF--PGGP--RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPM 197
P+ P SP PG P + T+ P G G Q P +EP +G P GP
Sbjct: 419 PYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKG-QKGEPAIIEPGMLIEGPPGPEGPA 477
Query: 198 QRVTPPRGMASVGPQSYGGGMRPP--PNSLAGPGLP----AMNMGP---------GVRGP 242
PP M G G PP P GLP M M P G +GP
Sbjct: 478 GLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGP 537
Query: 243 WASPSGNSIP----------YSSSSPGSYTGPPGGGGPPGT-PIMPSPGDSTNSSENMYT 291
S + + P TG PG GPPG+ + PGD +
Sbjct: 538 MVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDV--GPQGPRG 595
Query: 292 IMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA---- 347
+ P G AG+ PG G + A G G DGL PG
Sbjct: 596 VQGPPGP-AGK------PGRRGRAGSDGARGMPGQTGPKGDRGFDGL-AGLPGEKGHRGD 647
Query: 348 -GLSNAPGTPRDDGEMAAAG 366
G S PG P DDGE G
Sbjct: 648 PGPSGPPGPPGDDGERGDDG 667
Score = 42.4 bits (98), Expect = 7e-04
Identities = 48/180 (26%), Positives = 59/180 (32%), Gaps = 34/180 (18%)
Query: 210 GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 269
GP+ G P ++ PG+ + PG GP P P + P G PG G
Sbjct: 447 GPRGEKGQKGEP--AIIEPGM-LIEGPPGPEGPAGLPG----PPGTMGPTGQVGDPGERG 499
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP-------------------- 309
PPG P +P M +M P G G GP
Sbjct: 500 PPGRPGLPGADGLPGPPGTM--LMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLAL 557
Query: 310 -GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS-SPGAVAGLSNAPGTPRDDGEMAAAGT 367
GP GPM P G GSG + G P P G+ PG G AG+
Sbjct: 558 RGPAGPMGLTGRPGP---VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGS 614
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 74.3 bits (181), Expect = 2e-13
Identities = 94/297 (31%), Positives = 113/297 (38%), Gaps = 49/297 (16%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMSPR-FPGGPRPTLRMPSQ 165
PG AG GP G + P + P G G+P + R FPG P S+
Sbjct: 1129 PGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSK 1188
Query: 166 PPAGLPG--SQPLLPGA------MEPSPRAQGHPSM-GGPMQRVTPPRGMASVGPQSYGG 216
G PG P +PG+ M P P QG P + G P P+G GPQ G
Sbjct: 1189 GEVGFPGLAGSPGIPGSKGEQGFMGP-PGPQGQPGLPGSPGHATEGPKG--DRGPQGQPG 1245
Query: 217 GMRPPPNSLAGPGLPAM--------NMG----PGVRGPWASPSGNSIPYSSSSPGSYTGP 264
+ P + PGLP + N G PGV GP P +P SPG TG
Sbjct: 1246 -LPGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPG-ITGS 1303
Query: 265 PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGA-GRANFPLGPGPEGPMAAMSAME 322
G GPPG P P + I G QG G P PGP GP + E
Sbjct: 1304 KGDMGPPGVPGFQGP----KGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKG-E 1358
Query: 323 PHHVNGSLGSGDMDGL-----PKSSPG--AVAGLSNAPGTPRDD------GEMAAAG 366
P + G G + GL PK G + G+ PG P D GEM AG
Sbjct: 1359 P-GLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAG 1414
Score = 73.6 bits (179), Expect = 3e-13
Identities = 89/297 (29%), Positives = 106/297 (35%), Gaps = 67/297 (22%)
Query: 123 QGPPGSQPSPHNPNAP-------------MMGPHGQPFM--SPRFPGGPRP---TLRMPS 164
QGPPG P P A + GP G P + P G P LR+
Sbjct: 482 QGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKG 541
Query: 165 QP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT---------PPRGMASVGPQSY 214
G PG QP + G SP GHP + GP PP G+ G +
Sbjct: 542 DKGDPGFPG-QPGMTGRAG-SPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGD 599
Query: 215 GGGMRPPPNSLAGP-------GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 267
G PP AGP G P PG+ GP P G +P GPPG
Sbjct: 600 TGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP-GKIVPLP--------GPPGA 650
Query: 268 GGPPGTPIMPSP-GD----STNSSENMYTIMNPIGQ-GAGRANFPLGPGPEGPMAAMSAM 321
G PG+P P P GD T + +GQ G G FP PGP+G M
Sbjct: 651 EGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIG---FPGPPGPKGVDGLPGDM 707
Query: 322 EPHHVNGSLGSGDMDGLP-----KSSPG-------AVAGLSNAPGTPRDDGEMAAAG 366
P G G + G P K PG + GL PGTP + G + G
Sbjct: 708 GPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPG 764
Score = 71.6 bits (174), Expect = 1e-12
Identities = 86/293 (29%), Positives = 108/293 (36%), Gaps = 63/293 (21%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM----GPHGQPFMSPRFPGGPRPTLRMP 163
PG A G + F GP G + P P P + G GQP + P GP+ +P
Sbjct: 645 PGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLP 704
Query: 164 SQP-PAGLPGSQPL--LPGAMEPSPRAQ-GHPSMGGPMQRVTPPRGMASVGPQSYGGGMR 219
P G PG LPG P + Q G P +G P + P G+ + G
Sbjct: 705 GDMGPPGTPGRPGFNGLPG--NPGVQGQKGEPGVGLPGLKGLP--GLPGIP------GTP 754
Query: 220 PPPNSLAGPGLPAMNMG---PGVRGPWASPSGNSIPYSSSSPG-------SYTGPPGGGG 269
S+ PG+P + PG++G P +P S SPG GPPGG G
Sbjct: 755 GEKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQG 814
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFP--LGPGPEGPMAAMSAMEPHHVN 327
PPG + PG I G FP PGP+G A +
Sbjct: 815 PPG--LSGPPG---------------IKGEKGFPGFPGLDMPGPKGDKGAQG------LP 851
Query: 328 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
G G + GLP G PG P GEM GT P + SPG
Sbjct: 852 GITGQSGLPGLPGQQ-----GAPGIPGFPGSKGEMGVMGT-----PGQPGSPG 894
Score = 68.6 bits (166), Expect = 9e-12
Identities = 78/275 (28%), Positives = 96/275 (34%), Gaps = 43/275 (15%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP 183
G PG P P GP G P +S PG P GLPG + + G P
Sbjct: 975 GVPGKDGQAGQPGQP--GPKGDPGISGT-PGAP------------GLPGPKGSVGGMGLP 1019
Query: 184 -SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGP 242
+P +G P + GP P + G + G P + PGL G+ G
Sbjct: 1020 GTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAG-----PPGIGIPGLRGEKGDQGIAGF 1074
Query: 243 WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAG 301
SP S PG G PG G PG+ P SPG + ++ I G
Sbjct: 1075 PGSPGEKGEKGSIGIPGM-PGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1133
Query: 302 RANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-------------KSSPGAVA- 347
A P PGP GP + GS G GLP K S G V
Sbjct: 1134 EAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGF 1193
Query: 348 -GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
GL+ +PG P GE G P PG+
Sbjct: 1194 PGLAGSPGIPGSKGEQGFMGP-----PGPQGQPGL 1223
Score = 63.2 bits (152), Expect = 4e-10
Identities = 77/279 (27%), Positives = 99/279 (35%), Gaps = 51/279 (18%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPA 168
GDT G +GPPG+ P NP P + P P PG P + P
Sbjct: 79 GDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGP---PGPPGIPGCNGTKGERGPL 135
Query: 169 GLPGSQPLLPGAMEPSPRAQGHPSM-GGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAG 227
G PG LPG +P G P M G P + + GM G + + G P +
Sbjct: 136 GPPG----LPG-FAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPG----IPGTPGP 186
Query: 228 PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSE 287
PGLP G++GP P +TGPPG GPPG P +
Sbjct: 187 PGLP------GLQGPVGPPG-------------FTGPPGPPGPPGPP--------GEKGQ 219
Query: 288 NMYTIMNPIG-QGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSS 342
+ P G +G + P G + + G G G+P K
Sbjct: 220 MGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGE 279
Query: 343 PGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 381
PG G PG D GE + G FP E PG+
Sbjct: 280 PGK-PGPRGKPGKDGDKGEKGSPG-----FPGEPGYPGL 312
Score = 61.2 bits (147), Expect = 1e-09
Identities = 84/296 (28%), Positives = 97/296 (32%), Gaps = 71/296 (23%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPG--GPRPTLRMPSQPPAGLPGSQPLLPGA 180
QG PG P P G G P + P FPG G + P QP + P P LPG
Sbjct: 848 QGLPGITGQSGLPGLP--GQQGAPGI-PGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGE 904
Query: 181 M-------EPSPRAQ----------GHPSMGGPMQRVTPPRGMASVGPQSYGG------- 216
PR G P G M +V G Q G
Sbjct: 905 KGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGE 964
Query: 217 -GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 275
G R P + PG PG GP P + P + PG G GG G PGTP
Sbjct: 965 KGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGP-KGSVGGMGLPGTPG 1023
Query: 276 MPS-------------PGDSTNSSENMYTIMNPIGQG----------AGRANFPLGPGPE 312
PGD E P G G G A FP PG +
Sbjct: 1024 EKGVPGIPGPQGSPGLPGDKGAKGEKGQA--GPPGIGIPGLRGEKGDQGIAGFPGSPGEK 1081
Query: 313 GPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G GS+G M G P K SPG+V G +PG P + G+ G
Sbjct: 1082 GE------------KGSIGIPGMPGSPGLKGSPGSV-GYPGSPGLPGEKGDKGLPG 1124
Score = 56.6 bits (135), Expect = 4e-08
Identities = 58/176 (32%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPM-MGPHGQP-FMSPRFPGGPRPTLRMPSQ 165
PG G FQG PG SP + MGP G P F P+ G P Q
Sbjct: 1274 PGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPK--GLPGLQGIKGDQ 1331
Query: 166 PPAGLPGSQ--PLLPGAMEPSPRAQGHPSMGGPMQRVTPP--RGMASV-GPQSYGG--GM 218
G+PG++ P PG P +G P + GP PP +G+ + GP+ G G+
Sbjct: 1332 GDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEG---PPGLKGLQGLPGPKGQQGVTGL 1388
Query: 219 RPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP 274
P PG+P + PG +G P+G + P P G PG GPPGTP
Sbjct: 1389 VGIPGP---PGIPGFDGAPGQKGEMG-PAGPTGPRGFPGPPGPDGLPGSMGPPGTP 1440
Score = 52.4 bits (124), Expect = 7e-07
Identities = 76/282 (26%), Positives = 88/282 (31%), Gaps = 67/282 (23%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMS--PRFPGGPRPT-LRMPSQPPA-GLPGSQPL--- 176
GP G + P P GP G+P P PG P P L +P Q A G PG +
Sbjct: 338 GPLGEKGERGYPGTP--GPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGD 395
Query: 177 --LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGM---RP-PPNSLAGPGL 230
PG P P G + GP PP G Y G+ +P PP PG+
Sbjct: 396 RGFPGTSLPGP--SGRDGLPGPPGSPGPP------GQPGYTNGIVECQPGPPGDQGPPGI 447
Query: 231 PAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMY 290
P PG G Y GPPG GPP
Sbjct: 448 PGQ---PGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPP------------------- 485
Query: 291 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAV-- 346
G FP PG +G V G G+ + G P K PG
Sbjct: 486 ----------GEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYF 535
Query: 347 -------AGLSNAPGTPRDDGEMAAAGTFLHP-FPSESYSPG 380
G PG P G + G HP P SPG
Sbjct: 536 DLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPG 577
Score = 50.1 bits (118), Expect = 3e-06
Identities = 75/297 (25%), Positives = 98/297 (32%), Gaps = 60/297 (20%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQP- 166
PG G + F GPPG P P G G F P+ G + P P
Sbjct: 187 PGLPGLQGPVGPPGFTGPPGPPGPPGPPGEK--GQMGLSFQGPKGDKGDQGVSGPPGVPG 244
Query: 167 -----------------PAGLPGSQPLLPGAMEPS----PRAQGHPSMGGPM-QRVTP-- 202
G PG Q + PG E P +G P G ++ +P
Sbjct: 245 QAQVQEKGDFATKGEKGQKGEPGFQGM-PGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGF 303
Query: 203 ------PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSS 255
P + GPQ G PP GP + GP G +G P G P
Sbjct: 304 PGEPGYPGLIGRQGPQGEKGEAGPP-----GPPGIVIGTGPLGEKGERGYP-GTPGPRGE 357
Query: 256 SSPGSYTGPPGGGGPPGTPIMPS------PGDSTNSSENMYTIMNPIGQGAGRANFPLGP 309
P + G PG GPPG P+ PG+ + + + G +GR P P
Sbjct: 358 PGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGP-SGRDGLPGPP 416
Query: 310 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G GP +P + NG + + P G PG P GE+ G
Sbjct: 417 GSPGPPG-----QPGYTNGIVEC-------QPGPPGDQGPPGIPGQPGFIGEIGEKG 461
Score = 49.7 bits (117), Expect = 4e-06
Identities = 66/230 (28%), Positives = 72/230 (31%), Gaps = 71/230 (30%)
Query: 115 GSMAAGFFQGPPGSQPSPHNPNAP---MMGPHGQ--PFMSPRFPGGPRPTLRMPSQPPAG 169
GS F GPPG Q P P +P GP G P P PG P P P G
Sbjct: 1204 GSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGP------MGPPG 1257
Query: 170 LPGSQ-----------PLLPGAMEPS--PRAQGHPSMGGP------MQRVTPPRGMASVG 210
LPG P PG P P QG P +GG + PP G
Sbjct: 1258 LPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQG 1317
Query: 211 PQSYGG-----------------GMRPPPN------------SLAGP----------GLP 231
P+ G G+ PP L GP GLP
Sbjct: 1318 PKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGLP 1377
Query: 232 AMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSP 279
GV G P IP +PG GP G GP G P P P
Sbjct: 1378 GPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGP 1427
Score = 44.3 bits (103), Expect = 2e-04
Identities = 58/207 (28%), Positives = 71/207 (34%), Gaps = 53/207 (25%)
Query: 169 GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGP 228
GLPG Q ++ G P M GP GPQ PP
Sbjct: 52 GLPGLQGVI-----------GFPGMQGPE------------GPQG-------PPGQKGDT 81
Query: 229 GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSEN 288
G P + PG +G P + P + PG PG GPPG P + PG + E
Sbjct: 82 GEPGL---PGTKGTRGPPGASGYPGNPGLPGI----PGQDGPPGPPGI--PGCNGTKGER 132
Query: 289 MYTIMNPIGQGAGRANFPLGPGPEG--PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 346
P+G G F PGP G M HV G L G+ + PG +
Sbjct: 133 -----GPLGP-PGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGE-----RGFPG-I 180
Query: 347 AGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G PG P G + G P P
Sbjct: 181 PGTPGPPGLPGLQGPVGPPGFTGPPGP 207
Score = 38.9 bits (89), Expect = 0.008
Identities = 42/159 (26%), Positives = 50/159 (31%), Gaps = 34/159 (21%)
Query: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
G R P G P M G +GP P + G+ GPPG G PG P +
Sbjct: 49 GERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGT-RGPPGASGYPGNPGL 107
Query: 277 PS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDM 335
P PG G P PG G + P + G G+
Sbjct: 108 PGIPGQD------------------GPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGP 149
Query: 336 DGLP--KSSPGAV------------AGLSNAPGTPRDDG 360
GLP K PG + G PGTP G
Sbjct: 150 PGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPG 188
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 74.3 bits (181), Expect = 2e-13
Identities = 92/300 (30%), Positives = 107/300 (35%), Gaps = 52/300 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNP-NAPMMGPHGQPFM--SPRFPG--------G 155
APG GS A +G PG+ P +P A G G P + SP PG G
Sbjct: 1282 APGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERG 1341
Query: 156 PRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP--PRGMASVGPQS 213
PR P P + G P LPG + P G P GP+ P P G+ +
Sbjct: 1342 PRGPKGEPGAPGQVIGGEGPGLPG-RKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKG 1400
Query: 214 YGG--GMRPPPNSLAG------PGLPAMNMGPGVRGPWASP-----SGNS------IPYS 254
G G R PP G PGLP + PG +GP P G+S +P
Sbjct: 1401 DKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQ 1460
Query: 255 SSSPGSY--TGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQGAGR-----ANFP 306
SPG GPPG GP G P P G++ E P G R A P
Sbjct: 1461 PGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGER-----GPPGPAGSRGLPGVAGRP 1515
Query: 307 LGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
GPEGP P G G G P AVAG G G A G
Sbjct: 1516 GAKGPEGPPG------PTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATG 1569
Score = 68.9 bits (167), Expect = 7e-12
Identities = 80/254 (31%), Positives = 94/254 (37%), Gaps = 36/254 (14%)
Query: 124 GPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP 183
GPPG + S P + G G P + G Q P G G + EP
Sbjct: 2088 GPPGPKVSVDEPGPGLSGEQGPPGLK----GAKGEPGSNGDQGPKGDRGVPGIKGDRGEP 2143
Query: 184 SPRAQ-GHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVR 240
PR Q G+P + G RGMA GP+ G G R PP + G G P PG+
Sbjct: 2144 GPRGQDGNPGLPGE-------RGMA--GPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLA 2194
Query: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGG--GPPGTPIMPSPGDSTNSSENMYTIMNPIGQ 298
GP A P G S PG TGPPG G GP G +P P + ++ P G
Sbjct: 2195 GP-AGPQGPS--GLKGEPGE-TGPPGRGLTGPTGAVGLPGPPGPSG-------LVGPQGS 2243
Query: 299 -----GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNA- 352
G P PG +G V GS G G PK PG A
Sbjct: 2244 PGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVG-PKGEPGPTGAPGQAV 2302
Query: 353 PGTPRDDGEMAAAG 366
G P GE A G
Sbjct: 2303 VGLPGAKGEKGAPG 2316
Score = 65.9 bits (159), Expect = 6e-11
Identities = 82/335 (24%), Positives = 103/335 (30%), Gaps = 75/335 (22%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFFQGP------PGSQPSPHNPNAPMMGPHGQPFMSPR 151
AP V+G PG G GP PG + P P M G G R
Sbjct: 1351 APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGD--RGER 1408
Query: 152 FPGGPRPTLRMPSQP-------------PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQ 198
P GP P +P P G PG + + + +P G P G
Sbjct: 1409 GPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG 1468
Query: 199 RVTPPRGMASVGPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGP-------- 242
PP + G + + G G R PP GLP + PG +GP
Sbjct: 1469 PRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTG 1528
Query: 243 --------------------WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDS 282
A P G + P TG G GPPG + PG
Sbjct: 1529 RQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPK 1588
Query: 283 TNSSE----NMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD 336
+ + + P G G P PGP GP+ P +G +G +
Sbjct: 1589 GDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVG------PRGRDGEVGEKGDE 1642
Query: 337 GLPKSSPG-----AVAGLSNAPGTPRDDGEMAAAG 366
G P PG GL APG GE G
Sbjct: 1643 G-PPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQG 1676
Score = 63.9 bits (154), Expect = 2e-10
Identities = 95/337 (28%), Positives = 114/337 (33%), Gaps = 66/337 (19%)
Query: 92 DYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGP--------------PGSQPSPHNPNA 137
D P P G +APG+ G + QGP G+ P P +
Sbjct: 1404 DRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGS 1463
Query: 138 P-MMGPHGQP-FMSPR----FPGGPRPTLRMPSQPPAGLPGSQPL-----LPGAMEP--- 183
P GP G P + P+ FPG + P G GS+ L PGA P
Sbjct: 1464 PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 184 -----------SPRAQGHPSMGGPMQRVTPPRG-MASVGPQSYGG-----GMRPPPNSLA 226
P G P++ GP V P+G VGP G G R PP L
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGP--AVAGPKGEKGDVGPAGPRGATGVQGERGPP-GLV 1580
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 286
PG P PG RGP +G + P S P G PG GPPG P+ P D
Sbjct: 1581 LPGDPGPKGDPGDRGP-IGLTGRAGPPGDSGPPGEKGDPGRPGPPG-PVGPRGRDGEVGE 1638
Query: 287 ENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 345
+ +G G P G G A P G G DG SPG+
Sbjct: 1639 KG--------DEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG-RNGSPGS 1689
Query: 346 VA--GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
G PG P G + G P E PG
Sbjct: 1690 SGPKGDRGEPGPPGPPGRLVDTG----PGAREKGEPG 1722
Score = 63.9 bits (154), Expect = 2e-10
Identities = 92/322 (28%), Positives = 104/322 (32%), Gaps = 75/322 (23%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPG------SQPSPHNPNAPMM------GPHGQP 146
P P PG AG A +GPPG + P P P + GP G+
Sbjct: 1500 PGPAGSRGLPG---VAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEK 1556
Query: 147 FMSPRFPGGPR-----------PTLRMPSQP-PAGLPGSQ-PL-LPGAMEPSPRAQGHPS 192
P GPR P L +P P P G PG + P+ L G P P G P
Sbjct: 1557 --GDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGP-PGDSGPPG 1613
Query: 193 MGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPA------MNMGPGVRG 241
G R PP VGP+ G G PP PGLP + PGVRG
Sbjct: 1614 EKGDPGRPGPP---GPVGPRGRDGEVGEKGDEGPPGD---PGLPGKAGERGLRGAPGVRG 1667
Query: 242 PWASPSGNSIPYS--------SSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIM 293
P P SS P G PG GPPG + PG
Sbjct: 1668 PVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE 1727
Query: 294 NPIGQGAGRANFPLGP---------GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG 344
P G G P P GP GP P G G +DG
Sbjct: 1728 GPRGP-KGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGR------ 1780
Query: 345 AVAGLSNAPGTPRDDGEMAAAG 366
+GL PG G AAG
Sbjct: 1781 --SGLDGKPGAAGPSGPNGAAG 1800
Score = 63.5 bits (153), Expect = 3e-10
Identities = 79/292 (27%), Positives = 94/292 (32%), Gaps = 36/292 (12%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P PV G PG A G QGP G + P P G G P + PG P P
Sbjct: 2176 PGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTG-PTGAVGLPGPPGP 2234
Query: 159 TLRMPSQPPAGLPG-----SQPLLPG--------AMEPSPRAQGHPSMGGPMQRVTPPRG 205
+ + Q GLPG +P PG SP G P + GP+ P
Sbjct: 2235 SGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGP 2294
Query: 206 MASVGPQSYG----GGMRPPPNSLAG-----PGLPAMNMGPGVRGPWASPSGNSIPYSSS 256
+ G G G + P LAG PG PG RG P
Sbjct: 2295 TGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPG 2354
Query: 257 SPG--SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGP 314
G GP G G PG + SPG + + G F PG GP
Sbjct: 2355 EDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGF---PGQTGP 2411
Query: 315 MAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
M P G G +G+P G PG P G A+G
Sbjct: 2412 RGEMGQPGPSGERGLAGPPGREGIP--------GPLGPPGPPGSVGPPGASG 2455
Score = 55.1 bits (131), Expect = 1e-07
Identities = 76/285 (26%), Positives = 92/285 (32%), Gaps = 30/285 (10%)
Query: 104 GSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMM-------GPHGQPFMS--PRFPG 154
GS P G QGPPG + P + GP G P ++ R P
Sbjct: 1968 GSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPP 2027
Query: 155 GPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQ-GHPSMGGPMQRVTPPRGMASVGPQ 212
GP P +P GLPG + A P R + G G R PP + GP
Sbjct: 2028 GPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPP 2087
Query: 213 SYGGGMRPPPNSL--AGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP 270
G P S+ GPGL PG++G P N P G PG G
Sbjct: 2088 GPPG----PKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNG----DQGPKGDRGVPGIKGD 2139
Query: 271 PGTPIMPSPGDSTNSSENMYTIMNPIG----QGAGRANFPLG----PGPEGPMAAMSAME 322
G P P D + P G QG P+G PGP G
Sbjct: 2140 RGEP-GPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAG 2198
Query: 323 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGT 367
P +G G G P G PG P G + G+
Sbjct: 2199 PQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
Score = 53.9 bits (128), Expect = 2e-07
Identities = 78/259 (30%), Positives = 91/259 (35%), Gaps = 50/259 (19%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHG-QPFMSPRFPGGPRPTLRMPS-----QPPAGLPGSQPL 176
+GP G + P P AP G G + F P P G P +R P+ + P GL G L
Sbjct: 1727 EGPRGPKGDPGLPGAP--GERGIEGFRGPPGPQGD-PGVRGPAGEKGDRGPPGLDGRSGL 1783
Query: 177 --LPGAMEPSPRAQGHPSMGGPMQRVTPP-RGMASVGPQSYGGGMRPPPNSLAGPGLPAM 233
PGA PS G P + P RG + S G+ P PGL
Sbjct: 1784 DGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGK 1843
Query: 234 NMGPGVRGPWA-----SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSEN 288
N PG G SG S P G PG GP G P +P P
Sbjct: 1844 NGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGP--------- 1894
Query: 289 MYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAG 348
+ P GQG FP PG GP G GS GLP G
Sbjct: 1895 ----VGPPGQG-----FPGVPGGTGPKGD---------RGETGSKGEQGLP-----GERG 1931
Query: 349 LSNAPGT-PRDDGEMAAAG 366
L PG+ P D + AG
Sbjct: 1932 LRGEPGSVPNVDRLLETAG 1950
Score = 53.1 bits (126), Expect = 4e-07
Identities = 78/301 (25%), Positives = 95/301 (31%), Gaps = 88/301 (29%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPP 167
P A +A Q +QP P P+ P GQ G P M +
Sbjct: 1220 PSLDQAVSGLATALCQASFTTQPRPEP--CPVYCPKGQK-------GEPG---EMGLRGQ 1267
Query: 168 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSY-GGGMRPPPNSLA 226
G PG P LPG +P QG PP + G + + G RP A
Sbjct: 1268 VGPPGD-PGLPGRTG-APGPQG------------PPGSATAKGERGFPGADGRPGSPGRA 1313
Query: 227 G----PGLPAMNMGPGVRGPWASP---------------------SGNSIPYSSSSPG-- 259
G PG P + PG+ GP P G +P PG
Sbjct: 1314 GNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPS 1373
Query: 260 ------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQG--------AGRANF 305
G PG GPPG P GD + E P G G G
Sbjct: 1374 GPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER-----GPPGPGEGGIAPGEPGLPGL 1428
Query: 306 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAA 365
P PGP+GP+ P G G + DG P GL PG+P + G
Sbjct: 1429 PGSPGPQGPVG------PPGKKGEKGDSE-DGAP--------GLPGQPGSPGEQGPRGPP 1473
Query: 366 G 366
G
Sbjct: 1474 G 1474
Score = 47.4 bits (111), Expect = 2e-05
Identities = 73/285 (25%), Positives = 92/285 (32%), Gaps = 64/285 (22%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTL---RMPSQPPAGLPGSQPLLPG 179
QGPPG P P +GP GQ F P PGG P S+ GLPG + L
Sbjct: 1886 QGPPGL-PGP-------VGPPGQGF--PGVPGGTGPKGDRGETGSKGEQGLPGERGL--- 1932
Query: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSY-------GGGMRPPPNSLAGPGLPA 232
+G P + R+ G+ + + G P P GP +
Sbjct: 1933 --------RGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDS 1984
Query: 233 MNMGP-GVRGPWASPSGNSIPYSSSSPGSY---------TGPPGGGG------PPGTPIM 276
GP G GP P + PG GPPG G PG P +
Sbjct: 1985 GEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGL 2044
Query: 277 PS----------PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHV 326
P PG+ E G P PGP GP ++ P +
Sbjct: 2045 PGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGP-GL 2103
Query: 327 NGSLGSGDMDGLPKSSPGA-----VAGLSNAPGTPRDDGEMAAAG 366
+G G + G K PG+ G PG D GE G
Sbjct: 2104 SGEQGPPGLKG-AKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRG 2147
Score = 46.2 bits (108), Expect = 5e-05
Identities = 91/360 (25%), Positives = 113/360 (31%), Gaps = 68/360 (18%)
Query: 74 APDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPH 133
AP R A G+ + + P PV PG T A G G G G + +P
Sbjct: 2258 APGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGL-PGAKGEKGAPG 2316
Query: 134 N--------PNAP----MMGPHGQPFMSPRF--PGGPRPTLRMPSQPPAGLPGSQPLLPG 179
P A + GP G+ + R PG P + + P G G PG
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGD----PG 2372
Query: 180 AMEP-SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMG 236
P SP G P + G + P VG G G P GL
Sbjct: 2373 VGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGR 2432
Query: 237 PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSP-----------GDSTNS 285
G+ GP P P S P +G G G PG +P P D
Sbjct: 2433 EGIPGPLGPPG----PPGSVGPPGASGLKGDKGDPGVG-LPGPRGERGEPGIRGEDGRPG 2487
Query: 286 SENMYTIMNPIGQ-----------------GAGRANFPLG-PGPEGPMAAMSAMEPHHVN 327
E + P G G + LG PGP G M P ++
Sbjct: 2488 QEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD 2547
Query: 328 GSLGSGDMDGLP-----KSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 380
G G +G P K PG AGL G G+ AAG P + SPG
Sbjct: 2548 GDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAG-----IPGDPGSPG 2602
Score = 43.1 bits (100), Expect = 4e-04
Identities = 69/262 (26%), Positives = 86/262 (32%), Gaps = 32/262 (12%)
Query: 124 GPPGSQPSPHNPNAPMMGPHG-QPFMSPRFPGGPRPTLRMPSQP----PAGLPGSQPLL- 177
GPPG P + GP G PR G +P AGLPG + LL
Sbjct: 2527 GPPG--PRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLG 2584
Query: 178 ----PGAM----EP-SPRAQGHPSMGGPMQRV--TPPRGMASVGPQSYGGGMRPPPNSLA 226
PGA +P SP G P + G V PRG+ G+
Sbjct: 2585 PQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKG 2644
Query: 227 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS--YTGPPGGGGPPGTPIMPSPGDSTN 284
G P PG+ G +P S +PG GP G G G PG +
Sbjct: 2645 EAGPPGR---PGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDG-----QPGPKGD 2696
Query: 285 SSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG 344
E IG G + GP GP ++ P + G G G P
Sbjct: 2697 QGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGER---GPPGERVV 2753
Query: 345 AVAGLSNAPGTPRDDGEMAAAG 366
G+ APG + G AG
Sbjct: 2754 GAPGVPGAPGERGEQGRPGPAG 2775
Score = 40.8 bits (94), Expect = 0.002
Identities = 62/245 (25%), Positives = 80/245 (32%), Gaps = 54/245 (22%)
Query: 167 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLA 226
P G PG + L +P P QG P + + GP P P+ LA
Sbjct: 1995 PIGFPGERGLKGDRGDPGP--QGPPGLA-----------LGERGP--------PGPSGLA 2033
Query: 227 G----PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMP--- 277
G PG+P + G G P G GPPG G PG P P
Sbjct: 2034 GEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPK 2093
Query: 278 ----SPGDSTNSSENMYTIMNPIGQ-GAGRANFPLG-------------PGPEGPMAAMS 319
PG + + + G+ G+ P G PGP G
Sbjct: 2094 VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPG 2153
Query: 320 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG----TFLHPFPSE 375
+ G G + G P+ PG V G + PG P G AG + L P E
Sbjct: 2154 LPGERGMAGPEGKPGLQG-PRGPPGPVGGHGD-PGPPGAPGLAGPAGPQGPSGLKGEPGE 2211
Query: 376 SYSPG 380
+ PG
Sbjct: 2212 TGPPG 2216
Score = 37.0 bits (84), Expect = 0.030
Identities = 56/198 (28%), Positives = 70/198 (35%), Gaps = 33/198 (16%)
Query: 108 PGDTMAAGSMAAGFFQGP---PGSQPSPHNPNAPMMGPHGQP----------FMSPRFPG 154
PGD +AG GP PG+ P +P +P G G P FM PR
Sbjct: 2568 PGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSP--GKDGVPGIRGEKGDVGFMGPRGLK 2625
Query: 155 GPRPTLRMPSQPPAGLPGSQPLLPGAMEPS-PRAQGHPSMGG----PMQRVTPPRGMASV 209
G R + GL G + A P P GH G P Q P + +
Sbjct: 2626 GERGV-----KGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKE-GLI 2679
Query: 210 GPQSYGG-GMRPPPNSLAGP----GLPAMNMGPGVRGP--WASPSGNSIPYSSSSPGSYT 262
GP+ G +P P G G P + PG G A P G P
Sbjct: 2680 GPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQ 2739
Query: 263 GPPGGGGPPGTPIMPSPG 280
G G GPPG ++ +PG
Sbjct: 2740 GQKGERGPPGERVVGAPG 2757
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 73.6 bits (179), Expect = 3e-13
Identities = 78/263 (29%), Positives = 88/263 (33%), Gaps = 31/263 (11%)
Query: 116 SMAAGFFQGP-PGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ 174
S+ AG QGP P P P P P G P P GP P + PP G
Sbjct: 30 SLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS 89
Query: 175 PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGM---RPPPNSLAGPGLP 231
P P + QG P GG + PP GP GG PPP GP P
Sbjct: 90 P-----RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP-P 143
Query: 232 AMNMGPGVRGPWASP------SGNSIPYSSSSPGSYTGPPGGGG-------PPGTPIMPS 278
+ R P P GN PG GPP GG PPG P P
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPP 203
Query: 279 P-GDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG---SGD 334
P GD + SS++ P G N P GP P P P N G G
Sbjct: 204 PQGDKSRSSQS--PPGKPQGPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQGPPPPGK 259
Query: 335 MDGLPKSSPGAVAGLSNAPGTPR 357
G P + PG P+
Sbjct: 260 PQGPPAQGGSKSQSARSPPGKPQ 282
Score = 73.6 bits (179), Expect = 3e-13
Identities = 70/229 (30%), Positives = 80/229 (34%), Gaps = 28/229 (12%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P G G G G QGPP +P +P P G P P GP P
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 113
Query: 159 TLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG-- 216
P PP G++P P P + QG P G + P G GP GG
Sbjct: 114 PPGKPQGPPP-QGGNRPQGP---PPPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGGNQ 168
Query: 217 --GMRPPPNSLAGP----GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPP--GGG 268
G PPP GP G P + P G+ S S PG GPP GG
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGN 228
Query: 269 GPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPG-PEGPMA 316
P G P P PG P QG + P PG P+GP A
Sbjct: 229 QPQGPP--PPPGKP----------QGPPPQGGNKPQGPPPPGKPQGPPA 265
Score = 65.9 bits (159), Expect = 6e-11
Identities = 58/204 (28%), Positives = 64/204 (31%), Gaps = 28/204 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P G G G G QGPP +P +P P G P P GP P
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 174
Query: 159 TLRMPSQPP--AGLPGSQPLLPG--------------AMEPSPRAQGHPSMGGPMQRVTP 202
P PP G P PG + P + QG P GG + P
Sbjct: 175 PPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP 234
Query: 203 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 262
P GP GG N GP P GP +G S S S P P
Sbjct: 235 PPPGKPQGPPPQGG------NKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQE 288
Query: 263 G------PPGGGGPPGTPIMPSPG 280
G PP GG P P P G
Sbjct: 289 GNNPQGPPPPAGGNPQQPQAPPAG 312
Score = 57.8 bits (138), Expect = 2e-08
Identities = 58/198 (29%), Positives = 68/198 (34%), Gaps = 25/198 (12%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPP---GSQPSPHNPNAPMMGPHGQPFMSPRFPGG 155
P G GD + G QGPP G+QP P P P G P + P G
Sbjct: 135 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ--GPPPPPGKPQGPPPQGGKKPQG 192
Query: 156 PRPTLRMPSQPPAG-------LPGSQPLLP---------GAMEPSPRAQGHPSMGGPMQR 199
P P + PP G P +P P G P + QG P GG +
Sbjct: 193 PPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 252
Query: 200 VTPPRGMASVGPQSYGGGMRPPPNSLAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSSSP 258
PP G GP + GG S G P P G +GP GN +
Sbjct: 253 GPPPPGKPQ-GPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPA 311
Query: 259 GSYTGP--PGGGGPPGTP 274
G GP P GG P P
Sbjct: 312 GQPQGPPRPPQGGRPSRP 329
Score = 48.1 bits (113), Expect = 1e-05
Identities = 57/201 (28%), Positives = 66/201 (32%), Gaps = 28/201 (13%)
Query: 173 SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMR---PPPNSLAGPG 229
SQ P + +P QG GG + PP GP GG PPP GP
Sbjct: 24 SQEESPSLIAGNP--QGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 81
Query: 230 LPAMNMGPGVRGPWASP------SGNSIPYSSSSPGSYTGPPGGGG-------PPGTPIM 276
P + R P P GN PG GPP GG PPG P
Sbjct: 82 -PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG 140
Query: 277 PSP-GDSTNSSEN-MYTIMNPIGQGAGR-------ANFPLGPGPEGPMAAMSAMEPHHVN 327
P P GD + S + P QG + P GP P+G P
Sbjct: 141 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQ 200
Query: 328 GSLGSGDMDGLPKSSPGAVAG 348
G GD +S PG G
Sbjct: 201 GPPPQGDKSRSSQSPPGKPQG 221
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 73.2 bits (178), Expect = 4e-13
Identities = 88/303 (29%), Positives = 103/303 (33%), Gaps = 70/303 (23%)
Query: 108 PGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPT-LRMPSQP 166
PGD G GPPG SP P G G+ R PG P P + P QP
Sbjct: 330 PGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGR-PGAPGPIGVGEPGQP 388
Query: 167 ----PAGLPGSQPLLPGAMEPSPRAQ---------------------GHPSMGGPMQRVT 201
P G+PG + L PG P P+ + G GP +
Sbjct: 389 GPRGPEGVPGERGL-PGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMG 447
Query: 202 PPRGMASVGPQSYGGGMRPP-PNSLAGPGLPAMN-----MGP---------GVRGPWASP 246
P G+ S G Q G + PP P AG GLP MGP GV+GP P
Sbjct: 448 IP-GIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEP 506
Query: 247 SGNSIPYSSSSPG--------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ 298
+P PG G PG GP G P PG + + G
Sbjct: 507 GSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKK--------GS 558
Query: 299 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRD 358
+ L PGPEGP EP G +G M G P G PG P
Sbjct: 559 KGNQGQRGL-PGPEGPKG-----EP----GIMGPFGMPGTSIPGPPGPKGDRGGPGIPGF 608
Query: 359 DGE 361
GE
Sbjct: 609 KGE 611
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/272 (28%), Positives = 91/272 (33%), Gaps = 49/272 (18%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-----MMGPHGQP----FMSPRFPGGPRPT 159
GD G +G GS P P+ P P + GP G P F + GP
Sbjct: 292 GDKGERGECGKPGIKGDKGS-PGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGP 350
Query: 160 LRMPSQPPAGLPG-----SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSY 214
P P G G Q PGA P P G P GP GP+
Sbjct: 351 YGSPGAPGIGQQGIKGERGQEGRPGA--PGPIGVGEPGQPGPR------------GPEGV 396
Query: 215 GGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP 274
P L G G P G GP P G G GP G GP G P
Sbjct: 397 -----PGERGLPGEGFPGPKGEKGSEGP-TGPQGLQGLSIKGEKGDI-GPVGPQGPMGIP 449
Query: 275 IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGD 334
+ S G+ I PIG + P G G G + M P G +G G
Sbjct: 450 GIGSQGEQG--------IQGPIGPPGPQG--PAGQGLPGSKGEVGQMGPTGPRGPVGIGV 499
Query: 335 MDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
PK PG++ GL PG P +DG G
Sbjct: 500 QG--PKGEPGSI-GLPGQPGVPGEDGAAGKKG 528
Score = 51.2 bits (121), Expect = 2e-06
Identities = 77/271 (28%), Positives = 91/271 (33%), Gaps = 57/271 (21%)
Query: 96 AAAPSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP--MMGPHGQPFMSPRFP 153
A P G PG G + QG G P P P +MGP G P S P
Sbjct: 535 ARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGL-PGPEGPKGEPGIMGPFGMPGTSIPGP 593
Query: 154 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 213
GP+ P G+PG + EP +G + GP V P G +
Sbjct: 594 PGPKGDRGGP-----GIPGFKG------EPGLSIRGPKGVQGPRGPVGAP------GLKG 636
Query: 214 YGGGMRPPPNSLAGPGLPAMNMG---------PGVRGPWASPSGNSIPYSSSSPGSYTGP 264
G P P L GP P G PGVRGP PSG + P TG
Sbjct: 637 DGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGP-PGPSGPR-GVGTQGPKGDTGQ 694
Query: 265 PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPH 324
G GPPG P S G I G F PGP+G M H
Sbjct: 695 KGLPGPPGPPGYGSQG---------------IKGEQGPQGF---PGPKGTMG-------H 729
Query: 325 HVNGSLGS-GDMDGLPKSSPGAVAGLSNAPG 354
+ G G G+ + K G +PG
Sbjct: 730 GLPGQKGEHGERGDVGKKGDKGEIGEPGSPG 760
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/153 (26%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 178 PGAMEPSPRAQGHPSMGGPMQRVTPPRGM--ASVGPQSYGG-----GMRPPPNSLAGPGL 230
PG P P G+P + G P G + GG G + PG+
Sbjct: 247 PGDPGP-PGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGI 305
Query: 231 PAMNMGPGVRGPWA--------SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG-D 281
PG GP P G+ P GPPG G PG P + G
Sbjct: 306 KGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIK 365
Query: 282 STNSSENMYTIMNPIGQGAGRANFPLGPGPEGP 314
E PIG G P PGP GP
Sbjct: 366 GERGQEGRPGAPGPIGVGE-----PGQPGPRGP 393
Score = 29.6 bits (65), Expect = 4.8
Identities = 35/120 (29%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 263 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAM 321
G PG GPPGT P N +G P G PG +G
Sbjct: 245 GDPGDPGPPGTHGNPGIKGERGPKGNPGNAQ----KGEAGERGPGGIPGYKGDKGERGEC 300
Query: 322 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESY-SPG 380
+ G GS G PK P + G++ PG P G G P P Y SPG
Sbjct: 301 GKPGIKGDKGSPGPYG-PK-GPRGIQGITGPPGDPGPKGFQGNKG---EPGPPGPYGSPG 355
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 72.8 bits (177), Expect = 5e-13
Identities = 79/270 (29%), Positives = 102/270 (37%), Gaps = 36/270 (13%)
Query: 124 GPPGSQPSPHNPNAPMM--GPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGS-----QPL 176
G PG +P P P P GP G P FPG P P + G G +P
Sbjct: 1157 GQPG-EPGPPGPKGPTGDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1214
Query: 177 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 236
PG+ P P + P GP+ + P S G Q G G + P ++ PG G
Sbjct: 1215 QPGS--PGPTGENGPP--GPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPG----KTG 1265
Query: 237 P-GVRGPWASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSE 287
P G GP P + + S G GPPG GPPG P + GD+ E
Sbjct: 1266 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGE 1323
Query: 288 N----MYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSP 343
+ ++ P G+ + + L PGP+G M +G +G G GLP P
Sbjct: 1324 KGHPGLIGLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GP 1380
Query: 344 GAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G A G GE G HP P
Sbjct: 1381 AGPKGAKGATGPGGPKGEKGVQGPPGHPGP 1410
Score = 67.0 bits (162), Expect = 3e-11
Identities = 87/296 (29%), Positives = 103/296 (34%), Gaps = 53/296 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQ--PSPHNPNAPMMGPHGQPFMSPR--FPGGPRPTLRM 162
A G + A G+ GPPG + P P PN GP G P + PG P +
Sbjct: 768 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEV 826
Query: 163 PSQPPAGLPGSQPLLPGAMEPSPRA--------QGHPSMGGPMQRVT------------- 201
Q G PG PG + P A +GHP GP
Sbjct: 827 GFQGKTGPPGP----PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 882
Query: 202 --PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 257
PP GP G G R P + GPGL N GP GP P+G+ ++
Sbjct: 883 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NEGPS--GP-PGPAGSPGERGAAG 938
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLG-PGPEGPM 315
G GPPG GP G P + G+ E PIG G P+G PGP GP
Sbjct: 939 SGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GPIGPTGRDGVQGPVGLPGPAGPP 991
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G G P PG + G PG DGE A G
Sbjct: 992 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARG 1046
Score = 65.5 bits (158), Expect = 8e-11
Identities = 73/265 (27%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMS--PRFPG--GPRPTLRMP 163
G+ GS +GP G +P P +MG G+ + P +PG GP+ +L P
Sbjct: 671 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 730
Query: 164 SQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP-- 220
P A G G++ L + + PR + P+ GP + P G + GG P
Sbjct: 731 GFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGATGKSGAKGTSGGDGPHG 785
Query: 221 PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
PP PG N PG +GP P + +P G G G GPPG P + P
Sbjct: 786 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGP- 843
Query: 281 DSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSAMEPHHVNGSLGSGDMD 336
QGA P+G PGP GP G+ G
Sbjct: 844 -----------------QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 886
Query: 337 GLP-KSSPGAVAGLSNAPGTPRDDG 360
G P K P + G G P G
Sbjct: 887 GAPGKDGPAGLRGFPGERGLPGTAG 911
Score = 61.2 bits (147), Expect = 1e-09
Identities = 82/280 (29%), Positives = 100/280 (35%), Gaps = 38/280 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P P+ + PG GS G G Q P P + GP G+ R G
Sbjct: 403 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ-GPRGPQG-LTGPPGKAGRRGR--AGADG 458
Query: 159 TLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVG 210
MP P G+ G + LPG P +GH G PP RG +G
Sbjct: 459 ARGMPGDP--GVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 512
Query: 211 PQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 269
P+ G P L GP G P + PGVRG P G P S P GPPG G
Sbjct: 513 PRGLPG--ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQG 566
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PGT +P P + + P G+ G+ P PG +GP P
Sbjct: 567 TPGTQGLPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTK 616
Query: 328 GSLG-SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G+ G SG L P V G+ G GE G
Sbjct: 617 GNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 656
Score = 56.6 bits (135), Expect = 4e-08
Identities = 71/279 (25%), Positives = 91/279 (32%), Gaps = 43/279 (15%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQ-PFMSPRFPGGPR--------PTLRMPSQPPAGLPGS 173
Q P +Q SP + + P Q P PG P L + P GL G
Sbjct: 239 QQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
Query: 174 QPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-----PNSLAGP 228
+ P +EP +G P GP + PP + GP G PP P S P
Sbjct: 299 KGE-PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAP 357
Query: 229 GLPAMNM--------GPGVRGPWAS----------PSGNSIPYSSSSPGSYTGPPGGGGP 270
G P ++ G G +GP + P YTG PG G
Sbjct: 358 GPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQ 417
Query: 271 PGTP-IMPSPGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 328
PG+P + GD + P G+ R G G A V G
Sbjct: 418 PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-------GRAGADGARGMPGDPGVKG 470
Query: 329 SLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G + GLP + G PG P +DGE G
Sbjct: 471 DRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDG 509
Score = 53.5 bits (127), Expect = 3e-07
Identities = 84/293 (28%), Positives = 101/293 (34%), Gaps = 53/293 (18%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
+PG+ AAGS G GPPG +P P P G G P + P GP T R Q
Sbjct: 930 SPGERGAAGS---GGPIGPPG-RPGPQGPPGAA-GEKGVP--GEKGPIGP--TGRDGVQG 980
Query: 167 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASVGPQSYGG-- 216
P GLPG P P + +G +G P Q+ T PP +GP G
Sbjct: 981 PVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAA 1036
Query: 217 ------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSSSPGSYTGPP 265
G R P G G GP PSG P GPP
Sbjct: 1037 GADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPP 1096
Query: 266 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGPEGPMAAMSA 320
G GP G P+ D + P G+ +G PG +GP
Sbjct: 1097 GPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1152
Query: 321 MEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G +GD DG PK +PG V G PG P + G G
Sbjct: 1153 KGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQDG 1202
Score = 49.3 bits (116), Expect = 6e-06
Identities = 69/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-----MMGPHGQPFMS---- 149
P P G A G G PGS P P N P GP G P
Sbjct: 1189 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGS-PGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247
Query: 150 -------PRFPGGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRV 200
P G P T + PAG PG L LPG++ R G GP V
Sbjct: 1248 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPV 1306
Query: 201 TPP-----RGMASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS 245
PP RG A G + + G G+ PP G LP PG +G P AS
Sbjct: 1307 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1366
Query: 246 -------------PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 279
P+G ++ PG GPPG GPPG I P P
Sbjct: 1367 GPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1419
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 72.8 bits (177), Expect = 5e-13
Identities = 79/270 (29%), Positives = 102/270 (37%), Gaps = 36/270 (13%)
Query: 124 GPPGSQPSPHNPNAPMM--GPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGS-----QPL 176
G PG +P P P P GP G P FPG P P + G G +P
Sbjct: 1136 GQPG-EPGPPGPKGPTGDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1193
Query: 177 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 236
PG+ P P + P GP+ + P S G Q G G + P ++ PG G
Sbjct: 1194 QPGS--PGPTGENGPP--GPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPG----KTG 1244
Query: 237 P-GVRGPWASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSE 287
P G GP P + + S G GPPG GPPG P + GD+ E
Sbjct: 1245 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGE 1302
Query: 288 N----MYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSP 343
+ ++ P G+ + + L PGP+G M +G +G G GLP P
Sbjct: 1303 KGHPGLIGLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GP 1359
Query: 344 GAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G A G GE G HP P
Sbjct: 1360 AGPKGAKGATGPGGPKGEKGVQGPPGHPGP 1389
Score = 67.0 bits (162), Expect = 3e-11
Identities = 87/296 (29%), Positives = 103/296 (34%), Gaps = 53/296 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQ--PSPHNPNAPMMGPHGQPFMSPR--FPGGPRPTLRM 162
A G + A G+ GPPG + P P PN GP G P + PG P +
Sbjct: 747 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEV 805
Query: 163 PSQPPAGLPGSQPLLPGAMEPSPRA--------QGHPSMGGPMQRVT------------- 201
Q G PG PG + P A +GHP GP
Sbjct: 806 GFQGKTGPPGP----PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 861
Query: 202 --PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 257
PP GP G G R P + GPGL N GP GP P+G+ ++
Sbjct: 862 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NEGPS--GP-PGPAGSPGERGAAG 917
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLG-PGPEGPM 315
G GPPG GP G P + G+ E PIG G P+G PGP GP
Sbjct: 918 SGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GPIGPTGRDGVQGPVGLPGPAGPP 970
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G G P PG + G PG DGE A G
Sbjct: 971 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARG 1025
Score = 65.5 bits (158), Expect = 8e-11
Identities = 73/265 (27%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMS--PRFPG--GPRPTLRMP 163
G+ GS +GP G +P P +MG G+ + P +PG GP+ +L P
Sbjct: 650 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 709
Query: 164 SQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP-- 220
P A G G++ L + + PR + P+ GP + P G + GG P
Sbjct: 710 GFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGATGKSGAKGTSGGDGPHG 764
Query: 221 PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
PP PG N PG +GP P + +P G G G GPPG P + P
Sbjct: 765 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGP- 822
Query: 281 DSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSAMEPHHVNGSLGSGDMD 336
QGA P+G PGP GP G+ G
Sbjct: 823 -----------------QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 865
Query: 337 GLP-KSSPGAVAGLSNAPGTPRDDG 360
G P K P + G G P G
Sbjct: 866 GAPGKDGPAGLRGFPGERGLPGTAG 890
Score = 61.2 bits (147), Expect = 1e-09
Identities = 82/280 (29%), Positives = 100/280 (35%), Gaps = 38/280 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P P+ + PG GS G G Q P P + GP G+ R G
Sbjct: 382 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ-GPRGPQG-LTGPPGKAGRRGR--AGADG 437
Query: 159 TLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVG 210
MP P G+ G + LPG P +GH G PP RG +G
Sbjct: 438 ARGMPGDP--GVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 491
Query: 211 PQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 269
P+ G P L GP G P + PGVRG P G P S P GPPG G
Sbjct: 492 PRGLPG--ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQG 545
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PGT +P P + + P G+ G+ P PG +GP P
Sbjct: 546 TPGTQGLPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTK 595
Query: 328 GSLG-SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G+ G SG L P V G+ G GE G
Sbjct: 596 GNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 635
Score = 57.4 bits (137), Expect = 2e-08
Identities = 68/270 (25%), Positives = 89/270 (32%), Gaps = 36/270 (13%)
Query: 123 QGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAME 182
+G +P P+ P QP R P P + + P GL G + P +E
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHR-PQNQEPQSQA-AHGPRGLKGEKGE-PAVLE 285
Query: 183 PSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-----PNSLAGPGLPAMNM-- 235
P +G P GP + PP + GP G PP P S PG P ++
Sbjct: 286 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML 345
Query: 236 ------GPGVRGPWAS----------PSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPS 278
G G +GP + P YTG PG G PG+P +
Sbjct: 346 PFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGE 405
Query: 279 PGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDG 337
GD + P G+ R G G A V G G + G
Sbjct: 406 SGDLGPQGPRGPQGLTGPPGKAGRR-------GRAGADGARGMPGDPGVKGDRGFDGLPG 458
Query: 338 LP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
LP + G PG P +DGE G
Sbjct: 459 LPGEKGHRGDTGAQGLPGPPGEDGERGDDG 488
Score = 53.5 bits (127), Expect = 3e-07
Identities = 84/293 (28%), Positives = 101/293 (34%), Gaps = 53/293 (18%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
+PG+ AAGS G GPPG +P P P G G P + P GP T R Q
Sbjct: 909 SPGERGAAGS---GGPIGPPG-RPGPQGPPGAA-GEKGVP--GEKGPIGP--TGRDGVQG 959
Query: 167 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASVGPQSYGG-- 216
P GLPG P P + +G +G P Q+ T PP +GP G
Sbjct: 960 PVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAA 1015
Query: 217 ------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSSSPGSYTGPP 265
G R P G G GP PSG P GPP
Sbjct: 1016 GADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPP 1075
Query: 266 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGPEGPMAAMSA 320
G GP G P+ D + P G+ +G PG +GP
Sbjct: 1076 GPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1131
Query: 321 MEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G +GD DG PK +PG V G PG P + G G
Sbjct: 1132 KGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQDG 1181
Score = 49.3 bits (116), Expect = 6e-06
Identities = 69/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-----MMGPHGQPFMS---- 149
P P G A G G PGS P P N P GP G P
Sbjct: 1168 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGS-PGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226
Query: 150 -------PRFPGGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRV 200
P G P T + PAG PG L LPG++ R G GP V
Sbjct: 1227 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPV 1285
Query: 201 TPP-----RGMASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS 245
PP RG A G + + G G+ PP G LP PG +G P AS
Sbjct: 1286 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1345
Query: 246 -------------PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 279
P+G ++ PG GPPG GPPG I P P
Sbjct: 1346 GPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1398
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 72.8 bits (177), Expect = 5e-13
Identities = 79/270 (29%), Positives = 102/270 (37%), Gaps = 36/270 (13%)
Query: 124 GPPGSQPSPHNPNAPMM--GPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGS-----QPL 176
G PG +P P P P GP G P FPG P P + G G +P
Sbjct: 1243 GQPG-EPGPPGPKGPTGDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1300
Query: 177 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 236
PG+ P P + P GP+ + P S G Q G G + P ++ PG G
Sbjct: 1301 QPGS--PGPTGENGPP--GPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPG----KTG 1351
Query: 237 P-GVRGPWASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSE 287
P G GP P + + S G GPPG GPPG P + GD+ E
Sbjct: 1352 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGE 1409
Query: 288 N----MYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSP 343
+ ++ P G+ + + L PGP+G M +G +G G GLP P
Sbjct: 1410 KGHPGLIGLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GP 1466
Query: 344 GAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 373
G A G GE G HP P
Sbjct: 1467 AGPKGAKGATGPGGPKGEKGVQGPPGHPGP 1496
Score = 67.0 bits (162), Expect = 3e-11
Identities = 87/296 (29%), Positives = 103/296 (34%), Gaps = 53/296 (17%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQ--PSPHNPNAPMMGPHGQPFMSPR--FPGGPRPTLRM 162
A G + A G+ GPPG + P P PN GP G P + PG P +
Sbjct: 854 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEV 912
Query: 163 PSQPPAGLPGSQPLLPGAMEPSPRA--------QGHPSMGGPMQRVT------------- 201
Q G PG PG + P A +GHP GP
Sbjct: 913 GFQGKTGPPGP----PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 968
Query: 202 --PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 257
PP GP G G R P + GPGL N GP GP P+G+ ++
Sbjct: 969 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NEGPS--GP-PGPAGSPGERGAAG 1024
Query: 258 PGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLG-PGPEGPM 315
G GPPG GP G P + G+ E PIG G P+G PGP GP
Sbjct: 1025 SGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GPIGPTGRDGVQGPVGLPGPAGPP 1077
Query: 316 AAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G G P PG + G PG DGE A G
Sbjct: 1078 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARG 1132
Score = 65.5 bits (158), Expect = 8e-11
Identities = 73/265 (27%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 109 GDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-MMGPHGQPFMS--PRFPG--GPRPTLRMP 163
G+ GS +GP G +P P +MG G+ + P +PG GP+ +L P
Sbjct: 757 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 816
Query: 164 SQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP-- 220
P A G G++ L + + PR + P+ GP + P G + GG P
Sbjct: 817 GFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGATGKSGAKGTSGGDGPHG 871
Query: 221 PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 280
PP PG N PG +GP P + +P G G G GPPG P + P
Sbjct: 872 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGP- 929
Query: 281 DSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSAMEPHHVNGSLGSGDMD 336
QGA P+G PGP GP G+ G
Sbjct: 930 -----------------QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 972
Query: 337 GLP-KSSPGAVAGLSNAPGTPRDDG 360
G P K P + G G P G
Sbjct: 973 GAPGKDGPAGLRGFPGERGLPGTAG 997
Score = 61.2 bits (147), Expect = 1e-09
Identities = 82/280 (29%), Positives = 100/280 (35%), Gaps = 38/280 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRP 158
P P+ + PG GS G G Q P P + GP G+ R G
Sbjct: 489 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ-GPRGPQG-LTGPPGKAGRRGR--AGADG 544
Query: 159 TLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVG 210
MP P G+ G + LPG P +GH G PP RG +G
Sbjct: 545 ARGMPGDP--GVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 598
Query: 211 PQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 269
P+ G P L GP G P + PGVRG P G P S P GPPG G
Sbjct: 599 PRGLPG--ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQG 652
Query: 270 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 327
PGT +P P + + P G+ G+ P PG +GP P
Sbjct: 653 TPGTQGLPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTK 702
Query: 328 GSLG-SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G+ G SG L P V G+ G GE G
Sbjct: 703 GNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 742
Score = 53.5 bits (127), Expect = 3e-07
Identities = 84/293 (28%), Positives = 101/293 (34%), Gaps = 53/293 (18%)
Query: 107 APGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQP 166
+PG+ AAGS G GPPG +P P P G G P + P GP T R Q
Sbjct: 1016 SPGERGAAGS---GGPIGPPG-RPGPQGPPGAA-GEKGVP--GEKGPIGP--TGRDGVQG 1066
Query: 167 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASVGPQSYGG-- 216
P GLPG P P + +G +G P Q+ T PP +GP G
Sbjct: 1067 PVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAA 1122
Query: 217 ------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSSSPGSYTGPP 265
G R P G G GP PSG P GPP
Sbjct: 1123 GADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPP 1182
Query: 266 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGPEGPMAAMSA 320
G GP G P+ D + P G+ +G PG +GP
Sbjct: 1183 GPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1238
Query: 321 MEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 366
G G +GD DG PK +PG V G PG P + G G
Sbjct: 1239 KGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQDG 1288
Score = 52.8 bits (125), Expect = 5e-07
Identities = 59/226 (26%), Positives = 75/226 (33%), Gaps = 34/226 (15%)
Query: 167 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----- 221
P GL G + P +EP +G P GP + PP + GP G PP
Sbjct: 378 PRGLKGEKGE-PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL 436
Query: 222 PNSLAGPGLPAMNM--------GPGVRGPWAS----------PSGNSIPYSSSSPGSYTG 263
P S PG P ++ G G +GP + P YTG
Sbjct: 437 PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTG 496
Query: 264 PPGGGGPPGTP-IMPSPGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 321
PG G PG+P + GD + P G+ R G G A
Sbjct: 497 RPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-------GRAGADGARGMP 549
Query: 322 EPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 366
V G G + GLP + G PG P +DGE G
Sbjct: 550 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDG 595
Score = 49.3 bits (116), Expect = 6e-06
Identities = 69/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAP-----MMGPHGQPFMS---- 149
P P G A G G PGS P P N P GP G P
Sbjct: 1275 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGS-PGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333
Query: 150 -------PRFPGGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRV 200
P G P T + PAG PG L LPG++ R G GP V
Sbjct: 1334 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPV 1392
Query: 201 TPP-----RGMASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS 245
PP RG A G + + G G+ PP G LP PG +G P AS
Sbjct: 1393 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1452
Query: 246 -------------PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 279
P+G ++ PG GPPG GPPG I P P
Sbjct: 1453 GPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,772,983
Number of Sequences: 37866
Number of extensions: 1843105
Number of successful extensions: 19142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 1566
Number of HSP's that attempted gapping in prelim test: 7663
Number of HSP's gapped (non-prelim): 5738
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.