Guide to the Human Genome
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Name: SSBP2 Sequence: fasta or formatted (361aa) NCBI GI: 40787999
Description:

single-stranded DNA binding protein 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         20           4
 C cysteine            0.8          3           1
 D aspartate           3.3         12           2
 E glutamate           3.3         12           1
 F phenylalanine       2.8         10           2
 G glycine            15.0         54           4
 H histidine           1.9          7           2
 I isoleucine          1.9          7           1
 K lysine              1.9          7           1
 L leucine             5.8         21           2
 M methionine          6.6         24           1
 N asparagine          6.6         24           2
 P proline            16.1         58           2
 Q glutamine           3.3         12           2
 R arginine            3.9         14           2
 S serine             10.0         36           2
 T threonine           3.0         11           1
 V valine              3.3         12           1
 W tryptophan          1.4          5           2
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   single-stranded DNA binding protein 2 
SSBP3                 0.834   single stranded DNA binding protein 3 isoform c [Hom...
SSBP3                 0.814   single stranded DNA binding protein 3 isoform a [Hom...
SSBP3                 0.779   single stranded DNA binding protein 3 isoform b [Hom...
SSBP4                 0.727   single stranded DNA binding protein 4 isoform b [Hom...
SSBP4                 0.710   single stranded DNA binding protein 4 isoform a [Hom...
COL4A5                0.070   type IV collagen alpha 5 isoform 2 precursor 
PRB2                  0.066   proline-rich protein BstNI subfamily 2 
COL17A1               0.065   alpha 1 type XVII collagen 
COL9A1                0.064   alpha 1 type IX collagen isoform 1 precursor 
PRB1                  0.062   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL5A2                0.061   alpha 2 type V collagen preproprotein 
COL4A5                0.061   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.061   type IV collagen alpha 5 isoform 3 precursor 
COL10A1               0.060   type X collagen alpha 1 precursor 
COL28A1               0.058   collagen, type XXVIII precursor 
COL9A1                0.058   alpha 1 type IX collagen isoform 2 precursor 
COL8A1                0.058   alpha 1 type VIII collagen precursor 
COL8A1                0.058   alpha 1 type VIII collagen precursor 
COL16A1               0.058   alpha 1 type XVI collagen precursor 
PRB3                  0.057   proline-rich protein BstNI subfamily 3 precursor [H...
FMN2                  0.057   formin 2 
COL7A1                0.056   alpha 1 type VII collagen precursor 
MAPK1IP1L             0.056   MAPK-interacting and spindle-stabilizing protein [Ho...
COL11A1               0.054   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.054   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.054   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A6                0.054   type IV alpha 6 collagen isoform A precursor 
COL5A3                0.054   collagen, type V, alpha 3 preproprotein 
COL4A6                0.054   type IV alpha 6 collagen isoform B precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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