Guide to the Human Genome
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Name: SSBP3 Sequence: fasta or formatted (388aa) NCBI GI: 21955170
Description:

single stranded DNA binding protein 3 isoform a

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [368aa] single stranded DNA binding protein 3 isoform b
alt prot [361aa] single stranded DNA binding protein 3 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         20           4
 C cysteine            0.8          3           1
 D aspartate           3.6         14           2
 E glutamate           2.6         10           1
 F phenylalanine       2.8         11           2
 G glycine            15.2         59           4
 H histidine           2.8         11           2
 I isoleucine          3.4         13           1
 K lysine              1.8          7           1
 L leucine             4.1         16           2
 M methionine          6.2         24           2
 N asparagine          6.7         26           2
 P proline            17.8         69           3
 Q glutamine           3.6         14           2
 R arginine            3.6         14           2
 S serine             10.6         41           4
 T threonine           2.8         11           1
 V valine              2.3          9           1
 W tryptophan          1.3          5           2
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   single stranded DNA binding protein 3 isoform a [Hom... 
SSBP3                 0.932   single stranded DNA binding protein 3 isoform b [Hom...
SSBP3                 0.907   single stranded DNA binding protein 3 isoform c [Hom...
SSBP2                 0.748   single-stranded DNA binding protein 2 
SSBP4                 0.709   single stranded DNA binding protein 4 isoform a [Hom...
SSBP4                 0.653   single stranded DNA binding protein 4 isoform b [Hom...
PRB2                  0.100   proline-rich protein BstNI subfamily 2 
PRB1                  0.082   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL3A1                0.076   collagen type III alpha 1 preproprotein 
PRB3                  0.076   proline-rich protein BstNI subfamily 3 precursor [H...
COL1A1                0.074   alpha 1 type I collagen preproprotein 
WDR33                 0.072   WD repeat domain 33 isoform 1 
COL5A1                0.072   alpha 1 type V collagen preproprotein 
COL11A2               0.072   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.072   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.072   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL4A5                0.071   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.069   type IV collagen alpha 5 isoform 2 precursor 
COL10A1               0.069   type X collagen alpha 1 precursor 
COL17A1               0.068   alpha 1 type XVII collagen 
COL4A5                0.067   type IV collagen alpha 5 isoform 1 precursor 
COL8A2                0.066   collagen, type VIII, alpha 2 
COL5A2                0.066   alpha 2 type V collagen preproprotein 
SF3A2                 0.065   splicing factor 3a, subunit 2 
COL2A1                0.063   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.063   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100293055          0.062   PREDICTED: similar to COL22A1 protein 
COL16A1               0.062   alpha 1 type XVI collagen precursor 
COL5A3                0.061   collagen, type V, alpha 3 preproprotein 
COL7A1                0.061   alpha 1 type VII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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