BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] (655 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] 1348 0.0 gi|169174355 PREDICTED: similar to sphingomyelin phosphodiestera... 224 1e-58 gi|169172738 PREDICTED: similar to sphingomyelin phosphodiestera... 224 1e-58 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 3e-05 gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 3e-04 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 3e-04 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 3e-04 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 3e-04 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 44 6e-04 gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 43 8e-04 gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 43 8e-04 gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 43 8e-04 gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 43 8e-04 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 0.001 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 0.001 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 0.001 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 0.001 gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.005 gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 40 0.005 gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.005 gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 40 0.007 gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 40 0.007 gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 40 0.007 gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 40 0.009 gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 40 0.009 gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 40 0.009 gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 40 0.009 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.012 gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 39 0.012 gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 39 0.012 >gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] Length = 655 Score = 1348 bits (3489), Expect = 0.0 Identities = 655/655 (100%), Positives = 655/655 (100%) Query: 1 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT Sbjct: 1 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60 Query: 61 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP Sbjct: 61 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120 Query: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS Sbjct: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180 Query: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE Sbjct: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240 Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE Sbjct: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300 Query: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL Sbjct: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360 Query: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY Sbjct: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420 Query: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ Sbjct: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480 Query: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP Sbjct: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540 Query: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK Sbjct: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600 Query: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA Sbjct: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655 >gi|169174355 PREDICTED: similar to sphingomyelin phosphodiesterase 3, neutral membrane [Homo sapiens] Length = 464 Score = 224 bits (572), Expect = 1e-58 Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%) Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377 GA LY+A+ + +R R + A P LDF+CLQEVFD R A +L + Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185 Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437 L +LYDVG G Q K L+SGLL ASRYP++ + C+P+ +DALASKG Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245 Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497 + ++GS +RIVG++ CTHL A ED +R QL L DW F + Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304 Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557 E+VAF V+ GD NFDNC D +LEQ+H LF ++DPCRLG +++PWA+GT L T+ L Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364 Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608 + +P ++ LE E+GR YLA G GR K GRR+DY Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417 Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649 + H ++ EVE+ +F T L GLTDH V ++L VS Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461 Score = 70.1 bits (170), Expect = 6e-12 Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%) Query: 6 TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65 +PFP L ALH ++ AL+FP YW + +L A Sbjct: 17 SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47 Query: 66 IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124 + L LLV P A G W Q RRP+ Y L L W+ PG+ F Sbjct: 48 LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102 Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167 F TAN+CLLPD AR NL ++Q A+ I GAARP + Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139 >gi|169172738 PREDICTED: similar to sphingomyelin phosphodiesterase 3, neutral membrane [Homo sapiens] Length = 464 Score = 224 bits (572), Expect = 1e-58 Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%) Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377 GA LY+A+ + +R R + A P LDF+CLQEVFD R A +L + Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185 Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437 L +LYDVG G Q K L+SGLL ASRYP++ + C+P+ +DALASKG Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245 Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497 + ++GS +RIVG++ CTHL A ED +R QL L DW F + Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304 Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557 E+VAF V+ GD NFDNC D +LEQ+H LF ++DPCRLG +++PWA+GT L T+ L Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364 Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608 + +P ++ LE E+GR YLA G GR K GRR+DY Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417 Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649 + H ++ EVE+ +F T L GLTDH V ++L VS Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461 Score = 70.1 bits (170), Expect = 6e-12 Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%) Query: 6 TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65 +PFP L ALH ++ AL+FP YW + +L A Sbjct: 17 SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47 Query: 66 IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124 + L LLV P A G W Q RRP+ Y L L W+ PG+ F Sbjct: 48 LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102 Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167 F TAN+CLLPD AR NL ++Q A+ I GAARP + Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 47.8 bits (112), Expect = 3e-05 Identities = 49/137 (35%), Positives = 60/137 (43%), Gaps = 13/137 (9%) Query: 190 PQGGDGV--ARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPEDACIV 245 P G +G AR PG +G G PG + GP G + SP A Sbjct: 462 PAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGP-KGPAGERGSPGPAGPK 520 Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT--PNHNQQDGDSGSLGSPSASRES 301 GE GRP EA +PG + G+ G GP G+T P QDG G G P A ++ Sbjct: 521 GSPGE-AGRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577 Query: 302 LVKGRAGPDTSASGEPG 318 V G GP A+GEPG Sbjct: 578 GVMGFPGP-KGAAGEPG 593 Score = 40.8 bits (94), Expect = 0.004 Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 26/160 (16%) Query: 184 FSSLVSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--------AS 230 F L P G G A + VPG + +G+ G PG+ GP A+ Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGERGVQGPPGPAGPRGAN 700 Query: 231 GDPVDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--TPNHN 283 G P + + DA G +G G P E G + GP+G +P + Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760 Query: 284 QQDGDSGSLGSPSASRESLVKGRAGPD-----TSASGEPG 318 G +G +G P + KG +GP T A G PG Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800 Score = 36.6 bits (83), Expect = 0.075 Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G G AR PG G G PG + G A G+P D+ + DA G Sbjct: 789 PAGPTG-ARGAPGDRGEPGPPGPAGFAGP-PGADGQPG-AKGEPGDAGAKGDAGPPGPAG 845 Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQ----TPNHNQQDGDSGSLGSPSASRESLVKG 305 G P + PG + G+ G P G SG+ G P + +G Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905 Query: 306 RAGP--DTSASGEPG 318 GP +T +G PG Sbjct: 906 GKGPRGETGPAGRPG 920 Score = 35.8 bits (81), Expect = 0.13 Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 10/128 (7%) Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPE---DACIVRIGGEEG 252 R PG + G GR PG+ GP A G P + P + G +G Sbjct: 220 RGPPGPPGKNGDDGEAGKPGR-PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278 Query: 253 GRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310 P PG NGA G GPRG P + G G G+ + G GP Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRG-LPGERGRPGAPGPAGARGNDGATGAAGPPGP- 336 Query: 311 TSASGEPG 318 T +G PG Sbjct: 337 TGPAGPPG 344 Score = 34.3 bits (77), Expect = 0.37 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 23/104 (22%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDP-VPGGQARNG--AGGG 274 PG A GPA G+P P G +G G P A P PG + +G GG Sbjct: 376 PGPAGAAGPA-GNPGADGQP---------GAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P G G+SG G+P + ++ KG GP G PG Sbjct: 426 PPGPK-------GNSGEPGAPGSKGDTGAKGEPGP-VGVQGPPG 461 Score = 34.3 bits (77), Expect = 0.37 Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 25/149 (16%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSPEDACIV 245 P G G A PG I + KG G PG G A G P S + Sbjct: 840 PPGPAGPA-GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898 Query: 246 RIGGEEGGRPPEAD--------------DPVPGGQARNGAGGGPRGQ--TPNHNQQDGDS 289 G+EGG+ P + P P G+ + GP G TP G Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958 Query: 290 GSLGSPSASRESLVKGRAGPDTSASGEPG 318 G +G P E G GP SGEPG Sbjct: 959 GVVGLPGQRGERGFPGLPGP----SGEPG 983 Score = 32.7 bits (73), Expect = 1.1 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 24/138 (17%) Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKG-DGGRHPGDEAANGPASGDPVDSSSPEDAC 243 P+G G A +PG+ T S G DG P A G P + A Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578 Query: 244 IVRIGGEEG--GRPPEADDP-VPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300 ++ G +G G P +A + VPG G G +DG++G+ G P + Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----------KDGEAGAQGPPGPAGP 627 Query: 301 SLVKGRAGPDTSASGEPG 318 + +G GP +G PG Sbjct: 628 AGERGEQGP----AGSPG 641 Score = 32.7 bits (73), Expect = 1.1 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%) Query: 213 KGDGG--RHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 +GD G H G GP P SP + G G R P PG NG Sbjct: 1102 QGDRGIKGHRGFSGLQGP----PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG 1157 Query: 271 AGG-----GPRGQTPNHNQQDGDSGSLGSP 295 G GPRG+T GD+G +G P Sbjct: 1158 LPGPIGPPGPRGRT-------GDAGPVGPP 1180 Score = 30.4 bits (67), Expect = 5.4 Identities = 41/135 (30%), Positives = 47/135 (34%), Gaps = 13/135 (9%) Query: 192 GGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEE 251 G DG A A PG+ +G G PG G G P S P GE Sbjct: 938 GADGPAGA-PGTPGPQGIAGQRGVVGL-PGQRGERG-FPGLPGPSGEPGKQGPSGASGER 994 Query: 252 GGR----PPEADDPVPGGQARNGAGGGP----RGQTPNHNQQDGDSGSLGSPSASRESLV 303 G PP P PG R GA G R +P G++G G P A Sbjct: 995 GPPGPMGPPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053 Query: 304 KGRAGPDTSASGEPG 318 G GP SG+ G Sbjct: 1054 PGPVGP-AGKSGDRG 1067 >gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] Length = 2944 Score = 44.7 bits (104), Expect = 3e-04 Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 28/150 (18%) Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDA 242 S LV PQG G+ PG + T G G PG + A+G G P SP Sbjct: 2235 SGLVGPQGSPGL----PGQVGET------GKPGA-PGRDGASGKDGDRGSPGVPGSPGLP 2283 Query: 243 CIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQ------------TPNHNQQDGD 288 V GE G G P +A +PG + GA GG G P + G+ Sbjct: 2284 GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGE 2343 Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPG 318 +G G P E KG GP G+PG Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGP-KGFKGDPG 2372 Score = 40.4 bits (93), Expect = 0.005 Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 29/155 (18%) Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP----EDACI 244 + G+ R PG V KGD G PG++ NG +SG D P + Sbjct: 1653 KAGERGLRGAPGV---RGPVGEKGDQG-DPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRL 1708 Query: 245 VRIG------------GEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDG 287 V G G+EG R P+ D +PG G G GP+G P G Sbjct: 1709 VDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGD-PGVRGPAG 1767 Query: 288 DSGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322 + G G P S + G+ G SG GA K Sbjct: 1768 EKGDRGPPGLDGRSGLDGKPGA-AGPSGPNGAAGK 1801 Score = 38.1 bits (87), Expect = 0.026 Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 22/110 (20%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KGD GR PG GP D GE+G P D +PG G Sbjct: 1615 KGDPGR-PGPPGPVGPRGRDGEV-------------GEKGDEGPPGDPGLPGKAGERGLR 1660 Query: 273 GGPRGQTPNHNQQD----GDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G P + P + D G+ G GSP +S +G GP G PG Sbjct: 1661 GAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGP----PGPPG 1706 Score = 34.3 bits (77), Expect = 0.37 Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 9/145 (6%) Query: 214 GDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG 273 G+ G+ PG NG GDP + + G EG P+ + PG G G Sbjct: 1833 GEDGK-PGLNGKNGEP-GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPG 1890 Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG--PDTSASGEPGA--NSKLLYKASV 329 P P G G G E+ KG G + GEPG+ N L + + Sbjct: 1891 LPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAG 1950 Query: 330 VKKAAARRRRHPDEAFDHEVSAFFP 354 +K +A R E +D +F P Sbjct: 1951 IKASAL---REIVETWDESSGSFLP 1972 Score = 33.9 bits (76), Expect = 0.49 Identities = 45/151 (29%), Positives = 52/151 (34%), Gaps = 45/151 (29%) Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKGDGGR-----------------HPGDEAANG 227 PQG G A R PG+ R S G+ G PG+ G Sbjct: 1285 PQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRG 1344 Query: 228 PASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDG 287 P G+P +P IGGE G P DP P G GPRG G Sbjct: 1345 P-KGEP---GAPGQV----IGGEGPGLPGRKGDPGPSGPP------GPRGPL-------G 1383 Query: 288 DSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 D G G P ++ KG G D G PG Sbjct: 1384 DPGPRGPPGLPGTAM-KGDKG-DRGERGPPG 1412 Score = 33.5 bits (75), Expect = 0.64 Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 26/108 (24%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KG+ GR PGD A GPA P GE+G P G Q G Sbjct: 1533 KGEPGR-PGDPAVVGPAVAGPK--------------GEKGDVGPAGPRGATGVQGERGPP 1577 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G GD G G P + GRAGP D+ GE G Sbjct: 1578 G---------LVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKG 1616 Score = 33.5 bits (75), Expect = 0.64 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 14/143 (9%) Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSS---PED 241 + L +G V PG + +G G GD+ G +GDP D S P D Sbjct: 2513 AGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD-GDKGPRGD-NGDPGDKGSKGEPGD 2570 Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQTPNHNQQDGDSGSLGSPSASRE 300 + G G P+ PG G G P + P + GD G +G E Sbjct: 2571 KGSAGLPGLRGLLGPQGQ---PGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGE 2627 Query: 301 SLVKGRAG-----PDTSASGEPG 318 VKG G D +G PG Sbjct: 2628 RGVKGACGLDGEKGDKGEAGPPG 2650 Score = 32.0 bits (71), Expect = 1.8 Identities = 33/129 (25%), Positives = 43/129 (33%), Gaps = 30/129 (23%) Query: 220 PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275 PG++ GP A G D P GE G P +PG R GA G GP Sbjct: 1464 PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523 Query: 276 RGQTPNHNQQD-------------------GDSGSLGSPSASRESLVKGRAGP------- 309 G T ++ G+ G +G + V+G GP Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG 1583 Query: 310 DTSASGEPG 318 D G+PG Sbjct: 1584 DPGPKGDPG 1592 Score = 31.6 bits (70), Expect = 2.4 Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 20/131 (15%) Query: 201 PGSIKRTASVEYKGDG--GRH--PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGR 254 PG SV+ G G G PG + A G ++GD I GE G R Sbjct: 2087 PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPR 2146 Query: 255 PPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309 + + +PG + G G GPRG P GD G G+P + G AGP Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRG-PPGPVGGHGDPGPPGAPG------LAGPAGP 2199 Query: 310 D--TSASGEPG 318 + GEPG Sbjct: 2200 QGPSGLKGEPG 2210 Score = 30.8 bits (68), Expect = 4.1 Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 17/132 (12%) Query: 190 PQG--GDGVARAVPGSIKRTASVEYKGDGG-RHPGDEAANGPASGDPVDSSSPEDACIVR 246 P+G GD R PG + TA KGD G R P G A G+P Sbjct: 1378 PRGPLGDPGPRGPPG-LPGTAMKGDKGDRGERGPPGPGEGGIAPGEP------------G 1424 Query: 247 IGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGR 306 + G G P+ PG + G P G+ G G P A +G Sbjct: 1425 LPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGF 1484 Query: 307 AGPDTSASGEPG 318 GP +GE G Sbjct: 1485 PGP-LGEAGEKG 1495 Score = 30.0 bits (66), Expect = 7.0 Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 12/106 (11%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 + G P E GP GD + P + GE G + D PG Q G Sbjct: 1965 ESSGSFLPVPERRRGP-KGDSGEQGPPGKEGPIGFPGERGLKGDRGD---PGPQGPPGLA 2020 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G RG G SG G P + GRAG +G PG Sbjct: 2021 LGERGPP-------GPSGLAGEPGKPGIPGLPGRAG-GVGEAGRPG 2058 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268 KGD G+ PG GP PV S +D ++ + G EG RP A P P G Sbjct: 1104 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 1160 Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318 N G RG +P + G+ GS+ SP G GP A GEPG Sbjct: 1161 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 1203 Score = 30.4 bits (67), Expect = 5.4 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%) Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231 + T S+ A + S DG R G +K KG+ G PG GP Sbjct: 716 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 774 Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266 PV P + + G +G GR E DP PG Sbjct: 775 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 834 Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295 G G P P ++ D G G P Sbjct: 835 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 863 Score = 30.0 bits (66), Expect = 7.0 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277 PG+ G S D P A + + G EG G P P P G+ GP G Sbjct: 917 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 965 Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 +T G GSLG A KG GP A GE G Sbjct: 966 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 998 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268 KGD G+ PG GP PV S +D ++ + G EG RP A P P G Sbjct: 689 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 745 Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318 N G RG +P + G+ GS+ SP G GP A GEPG Sbjct: 746 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 788 Score = 30.4 bits (67), Expect = 5.4 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%) Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231 + T S+ A + S DG R G +K KG+ G PG GP Sbjct: 301 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 359 Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266 PV P + + G +G GR E DP PG Sbjct: 360 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 419 Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295 G G P P ++ D G G P Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 448 Score = 30.0 bits (66), Expect = 7.0 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277 PG+ G S D P A + + G EG G P P P G+ GP G Sbjct: 502 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 550 Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 +T G GSLG A KG GP A GE G Sbjct: 551 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 583 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268 KGD G+ PG GP PV S +D ++ + G EG RP A P P G Sbjct: 869 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 925 Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318 N G RG +P + G+ GS+ SP G GP A GEPG Sbjct: 926 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 968 Score = 30.4 bits (67), Expect = 5.4 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%) Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231 + T S+ A + S DG R G +K KG+ G PG GP Sbjct: 481 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 539 Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266 PV P + + G +G GR E DP PG Sbjct: 540 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 599 Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295 G G P P ++ D G G P Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 628 Score = 30.0 bits (66), Expect = 7.0 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277 PG+ G S D P A + + G EG G P P P G+ GP G Sbjct: 682 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 730 Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 +T G GSLG A KG GP A GE G Sbjct: 731 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 763 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 43.5 bits (101), Expect = 6e-04 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 26/141 (18%) Query: 193 GDGVARAVPGSIKRTASVEYKGDGGRH-----------PGDEAANGPA--SGDPVDSSSP 239 GD PG + KGD G PG++ A G +G P D P Sbjct: 1211 GDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPP 1270 Query: 240 EDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 D + I G G G P + P P G + GP G+ G SG +G Sbjct: 1271 GDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKR-------GPSGHMGREGR 1323 Query: 298 SRESLVKGRAGPDTSASGEPG 318 E KG GPD G PG Sbjct: 1324 EGEKGAKGEPGPD----GPPG 1340 Score = 42.4 bits (98), Expect = 0.001 Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 20/144 (13%) Query: 182 ASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPED 241 A P+GG G P +K PG+ GPA G + S + Sbjct: 973 AGLRGFPGPKGGPGDPG--PTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSE 1030 Query: 242 ACIVRIG-----GEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGS 294 + G GE G P D +PG G G GP G+ +GD G +G+ Sbjct: 1031 GPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGE-------EGDKGDVGA 1083 Query: 295 PSASRESLVKGRAGPDTSASGEPG 318 P KG AGP G+PG Sbjct: 1084 PGHKGSKGDKGDAGP----PGQPG 1103 Score = 38.1 bits (87), Expect = 0.026 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 219 HPG---DEAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGG 273 HPG +E A GP + + ++G G +G R D G + +G G Sbjct: 498 HPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPG 557 Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKL 323 P Q GD G +G P E +G GP T +GEPG L Sbjct: 558 -----LPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLL 604 Score = 37.4 bits (85), Expect = 0.044 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG 277 PG GP G P + P I G +G P + PG Q +G+ G GP+G Sbjct: 598 PGPRGLLGPR-GSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQG 656 Query: 278 --QTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGA 319 TP G+ G G P + G GP + A G PG+ Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGS 702 Score = 31.6 bits (70), Expect = 2.4 Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 16/128 (12%) Query: 212 YKGDGGR--HPGD------EAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDP 261 ++G GR HPG + GP V + + +G G G P + Sbjct: 888 HQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQG 947 Query: 262 VPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKGRAGP--DTSASG 315 +PG + R GA G GP G G G G P + +KG GP A+G Sbjct: 948 LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANG 1007 Query: 316 EPGANSKL 323 PG L Sbjct: 1008 SPGERGPL 1015 Score = 31.6 bits (70), Expect = 2.4 Identities = 45/141 (31%), Positives = 51/141 (36%), Gaps = 17/141 (12%) Query: 188 VSPQG--GDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP---- 239 V P G GD PG S KGD PGD GP ASG+P P Sbjct: 1258 VGPTGLPGDLGPPGDPGVSGIDGSPGEKGD----PGDVGGPGPPGASGEPGAPGPPGKRG 1313 Query: 240 EDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 + R G GE+G + D PG GA G P P + G G +G P Sbjct: 1314 PSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLR--GIPGPVGEPGL 1371 Query: 298 SRESLVKGRAGPDTSASGEPG 318 G GP SG PG Sbjct: 1372 LGAPGQMGPPGP-LGPSGLPG 1391 >gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo sapiens] Length = 1424 Score = 43.1 bits (100), Expect = 8e-04 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%) Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218 R GAA +K SP NT + F QG G+ +++ V GD G Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558 Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276 PG + +G G P P + + GE+G + P D PG G G P Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617 Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G G G+P E+ +G T G PG Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659 Score = 35.8 bits (81), Expect = 0.13 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%) Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237 +G G+ RA PG + KGD G PG + A G A G P Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228 Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 P I G+ G R P PG + GA G P + GD GS+G P Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278 Query: 298 SRESLVKGRAGPD--TSASGEPG 318 G GP A G PG Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301 Score = 32.7 bits (73), Expect = 1.1 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 29/137 (21%) Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233 + A L P+G G + PG KG+ G +PG + GP G P Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342 Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--------TP 280 P I+ + G G G P +P P G N GPRG+ TP Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTP 1402 Query: 281 NHNQQDGDSGSLGSPSA 297 + G+ GS G P + Sbjct: 1403 GPAGEKGNKGSKGEPES 1419 Score = 32.3 bits (72), Expect = 1.4 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233 L P G G V + G RT KGD G PG +G A GDP Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293 Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286 P + G EG + + G G G G RG T ++ Q+ Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353 Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320 GD G+ G P +G +GP G PG++ Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386 Score = 32.0 bits (71), Expect = 1.8 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG + GP G+P P + ++ + G G P PG + G+ G Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318 P G G G+P A E KG GP + GEPG Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958 >gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo sapiens] Length = 1494 Score = 43.1 bits (100), Expect = 8e-04 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%) Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218 R GAA +K SP NT + F QG G+ +++ V GD G Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558 Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276 PG + +G G P P + + GE+G + P D PG G G P Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617 Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G G G+P E+ +G T G PG Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659 Score = 35.8 bits (81), Expect = 0.13 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%) Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237 +G G+ RA PG + KGD G PG + A G A G P Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228 Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 P I G+ G R P PG + GA G P + GD GS+G P Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278 Query: 298 SRESLVKGRAGPD--TSASGEPG 318 G GP A G PG Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301 Score = 35.4 bits (80), Expect = 0.17 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233 + A L P+G G + PG KG+ G +PG + GP G P Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342 Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288 P I+ + G G G P +P P G N GPRG+ +DG Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398 Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322 G+ G KG GP + G PG K Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431 Score = 32.3 bits (72), Expect = 1.4 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233 L P G G V + G RT KGD G PG +G A GDP Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293 Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286 P + G EG + + G G G G RG T ++ Q+ Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353 Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320 GD G+ G P +G +GP G PG++ Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386 Score = 32.0 bits (71), Expect = 1.8 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG + GP G+P P + ++ + G G P PG + G+ G Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318 P G G G+P A E KG GP + GEPG Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958 >gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo sapiens] Length = 1637 Score = 43.1 bits (100), Expect = 8e-04 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%) Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218 R GAA +K SP NT + F QG G+ +++ V GD G Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558 Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276 PG + +G G P P + + GE+G + P D PG G G P Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617 Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G G G+P E+ +G T G PG Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659 Score = 35.8 bits (81), Expect = 0.13 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%) Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237 +G G+ RA PG + KGD G PG + A G A G P Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228 Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 P I G+ G R P PG + GA G P + GD GS+G P Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278 Query: 298 SRESLVKGRAGPD--TSASGEPG 318 G GP A G PG Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301 Score = 35.4 bits (80), Expect = 0.17 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233 + A L P+G G + PG KG+ G +PG + GP G P Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342 Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288 P I+ + G G G P +P P G N GPRG+ +DG Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398 Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322 G+ G KG GP + G PG K Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431 Score = 32.3 bits (72), Expect = 1.4 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233 L P G G V + G RT KGD G PG +G A GDP Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293 Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286 P + G EG + + G G G G RG T ++ Q+ Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353 Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320 GD G+ G P +G +GP G PG++ Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386 Score = 32.0 bits (71), Expect = 1.8 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG + GP G+P P + ++ + G G P PG + G+ G Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318 P G G G+P A E KG GP + GEPG Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958 >gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo sapiens] Length = 1670 Score = 43.1 bits (100), Expect = 8e-04 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%) Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218 R GAA +K SP NT + F QG G+ +++ V GD G Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558 Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276 PG + +G G P P + + GE+G + P D PG G G P Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617 Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G G G+P E+ +G T G PG Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659 Score = 35.8 bits (81), Expect = 0.13 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%) Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237 +G G+ RA PG + KGD G PG + A G A G P Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228 Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297 P I G+ G R P PG + GA G P + GD GS+G P Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278 Query: 298 SRESLVKGRAGPD--TSASGEPG 318 G GP A G PG Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301 Score = 35.4 bits (80), Expect = 0.17 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233 + A L P+G G + PG KG+ G +PG + GP G P Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342 Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288 P I+ + G G G P +P P G N GPRG+ +DG Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398 Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322 G+ G KG GP + G PG K Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431 Score = 32.3 bits (72), Expect = 1.4 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233 L P G G V + G RT KGD G PG +G A GDP Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293 Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286 P + G EG + + G G G G RG T ++ Q+ Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353 Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320 GD G+ G P +G +GP G PG++ Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386 Score = 32.0 bits (71), Expect = 1.8 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG + GP G+P P + ++ + G G P PG + G+ G Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318 P G G G+P A E KG GP + GEPG Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 42.7 bits (99), Expect = 0.001 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG + PGS+ V KG+ PG+ GP P +A +GG Sbjct: 1244 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1285 Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305 +G R + + PG GA G P P N GD G G P + + V G Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1345 Query: 306 RAGPDTSASGEPG 318 G D G+PG Sbjct: 1346 DKGED----GDPG 1354 Score = 37.4 bits (85), Expect = 0.044 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272 PGD+ G GDP P A +GG++G G P + P P G+A Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G RG P +G G G+ + G+ GP +G+PG Sbjct: 1371 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417 Score = 35.4 bits (80), Expect = 0.17 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG+ + G A G P P A GE+G + P D V G G G Sbjct: 1071 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1129 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P G +DGD G +G P KG GP G PG Sbjct: 1130 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1165 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%) Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240 V PQG G R +PG + G G PG G GDP Sbjct: 1407 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1465 Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290 ++ + G G + + D +PG Q GA G GP G P G G Sbjct: 1466 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1525 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337 + GS + + G GP G PG +++ ++ RR Sbjct: 1526 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1568 Score = 33.9 bits (76), Expect = 0.49 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279 PG A G SGDP P+ G G + P PG + R GA GG RG Sbjct: 558 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 602 Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P GD G G P + +G GP G PG Sbjct: 603 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 640 Score = 33.9 bits (76), Expect = 0.49 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG+ PG + ++G G PG GP P + P + G Sbjct: 950 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 997 Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305 G P + +PG + GA G GP+G + G G G P A +KG Sbjct: 998 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1057 Query: 306 RAGPDTSASGEPG 318 GP G PG Sbjct: 1058 GEGP----QGPPG 1066 Score = 32.0 bits (71), Expect = 1.8 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275 PG+ G G P P A + G +G P+ + PG Q G G GP Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716 Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325 +G P G G G P A G+ G + A G PG + Y Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 770 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 42.7 bits (99), Expect = 0.001 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG + PGS+ V KG+ PG+ GP P +A +GG Sbjct: 1193 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1234 Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305 +G R + + PG GA G P P N GD G G P + + V G Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1294 Query: 306 RAGPDTSASGEPG 318 G D G+PG Sbjct: 1295 DKGED----GDPG 1303 Score = 37.4 bits (85), Expect = 0.044 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272 PGD+ G GDP P A +GG++G G P + P P G+A Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1319 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G RG P +G G G+ + G+ GP +G+PG Sbjct: 1320 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366 Score = 35.4 bits (80), Expect = 0.17 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG+ + G A G P P A GE+G + P D V G G G Sbjct: 1020 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1078 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P G +DGD G +G P KG GP G PG Sbjct: 1079 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1114 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%) Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240 V PQG G R +PG + G G PG G GDP Sbjct: 1356 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1414 Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290 ++ + G G + + D +PG Q GA G GP G P G G Sbjct: 1415 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1474 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337 + GS + + G GP G PG +++ ++ RR Sbjct: 1475 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1517 Score = 33.9 bits (76), Expect = 0.49 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279 PG A G SGDP P+ G G + P PG + R GA GG RG Sbjct: 507 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 551 Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P GD G G P + +G GP G PG Sbjct: 552 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 589 Score = 33.9 bits (76), Expect = 0.49 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG+ PG + ++G G PG GP P + P + G Sbjct: 899 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 946 Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305 G P + +PG + GA G GP+G + G G G P A +KG Sbjct: 947 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1006 Query: 306 RAGPDTSASGEPG 318 GP G PG Sbjct: 1007 GEGP----QGPPG 1015 Score = 32.0 bits (71), Expect = 1.8 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275 PG+ G G P P A + G +G P+ + PG Q G G GP Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665 Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325 +G P G G G P A G+ G + A G PG + Y Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 719 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 42.7 bits (99), Expect = 0.001 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG + PGS+ V KG+ PG+ GP P +A +GG Sbjct: 1232 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1273 Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305 +G R + + PG GA G P P N GD G G P + + V G Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1333 Query: 306 RAGPDTSASGEPG 318 G D G+PG Sbjct: 1334 DKGED----GDPG 1342 Score = 37.4 bits (85), Expect = 0.044 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272 PGD+ G GDP P A +GG++G G P + P P G+A Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1358 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G RG P +G G G+ + G+ GP +G+PG Sbjct: 1359 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405 Score = 35.4 bits (80), Expect = 0.17 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274 PG+ + G A G P P A GE+G + P D V G G G Sbjct: 1059 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1117 Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P G +DGD G +G P KG GP G PG Sbjct: 1118 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1153 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%) Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240 V PQG G R +PG + G G PG G GDP Sbjct: 1395 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1453 Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290 ++ + G G + + D +PG Q GA G GP G P G G Sbjct: 1454 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1513 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337 + GS + + G GP G PG +++ ++ RR Sbjct: 1514 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1556 Score = 33.9 bits (76), Expect = 0.49 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279 PG A G SGDP P+ G G + P PG + R GA GG RG Sbjct: 546 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 590 Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P GD G G P + +G GP G PG Sbjct: 591 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 628 Score = 33.9 bits (76), Expect = 0.49 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G DG+ PG + ++G G PG GP P + P + G Sbjct: 938 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 985 Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305 G P + +PG + GA G GP+G + G G G P A +KG Sbjct: 986 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1045 Query: 306 RAGPDTSASGEPG 318 GP G PG Sbjct: 1046 GEGP----QGPPG 1054 Score = 32.0 bits (71), Expect = 1.8 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275 PG+ G G P P A + G +G P+ + PG Q G G GP Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704 Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325 +G P G G G P A G+ G + A G PG + Y Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 758 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 42.7 bits (99), Expect = 0.001 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 23/148 (15%) Query: 193 GDGVARAVPGSIKRTASVEYKGDGGRH--------PGDEAANGPA-----SGDPVDSSSP 239 G+ A +PG+ + ++G G + G+ A GPA +G+P P Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVP 530 Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGS 294 + + G GG + PG Q +G G GPRGQ P G G+ G+ Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ-PGVMGFPGPKGNDGA 589 Query: 295 PSASRESLVKGRAGPDTSASGEPGANSK 322 P + E G GP G PG N + Sbjct: 590 PGKNGERGGPGGPGP----QGPPGKNGE 613 Score = 40.8 bits (94), Expect = 0.004 Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 27/130 (20%) Query: 201 PGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADD 260 PGS + +G+ GR PG +GP G P G G P+ +D Sbjct: 545 PGSDGKPGPPGSQGESGR-PGPPGPSGPR-GQP---------------GVMGFPGPKGND 587 Query: 261 PVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD--------TS 312 PG G GGP Q P ++G++G G P + KG GP Sbjct: 588 GAPGKNGERGGPGGPGPQGP--PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645 Query: 313 ASGEPGANSK 322 G PG N K Sbjct: 646 TGGPPGENGK 655 Score = 40.0 bits (92), Expect = 0.007 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Query: 213 KGDGGRHPGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEG--------GRPPEADDPV 262 KG+GG PG GP + G+ ++ P A G+ G G P E + Sbjct: 779 KGEGGA-PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG 837 Query: 263 PGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 P G A G GP G P G+ GS G P A+ +G GP S +G PG Sbjct: 838 PPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS-NGNPG 891 Score = 38.1 bits (87), Expect = 0.026 Identities = 43/160 (26%), Positives = 52/160 (32%), Gaps = 38/160 (23%) Query: 190 PQGGDGVA--------------RAVPGSIKRTASVEYKGDGGRH--------PGDEAANG 227 P+GG G A + +PG S KGD G PG + G Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG 762 Query: 228 PAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-----P 280 P G P + P D EGG P P G GP G P Sbjct: 763 PTGPIGPPGPAGQPGDK-------GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815 Query: 281 NHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 N + G G G+P E G AGP + +G PG Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855 Score = 38.1 bits (87), Expect = 0.026 Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 13/141 (9%) Query: 193 GDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPASGDPVDSSSPE--DACIV 245 G+G A +PG S +G+ G PG NG G + E + Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839 Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-PNHNQQDGDSGSLGSPSASRESLVK 304 + G GG P G + G+ GGP P G GS G+P S Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899 Query: 305 GRAGP-----DTSASGEPGAN 320 G+ GP +T A G PG + Sbjct: 900 GKDGPPGPAGNTGAPGSPGVS 920 Score = 37.4 bits (85), Expect = 0.044 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247 P+G G + V G + + G+ G PG + G A +G+P +P + Sbjct: 967 PRGSPG-PQGVKGESGKPGANGLSGERGP-PGPQGLPGLAGTAGEPGRDGNPGSDGLPGR 1024 Query: 248 GGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESL 302 G GG+ ++ PG G G GP G++ + + G +G G+P + Sbjct: 1025 DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRG-ESGPAGPAGAPGPAGSRG 1083 Query: 303 VKGRAGP--DTSASGEPGA 319 G GP D +GE GA Sbjct: 1084 APGPQGPRGDKGETGERGA 1102 Score = 37.0 bits (84), Expect = 0.057 Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 197 ARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256 AR PG + +G G PG NG A G+P +A I + G +G Sbjct: 412 ARGPPGPAGANGAPGLRGGAGE-PGK---NG-AKGEPGPRGERGEAGIPGVPGAKGEDGK 466 Query: 257 EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316 + PG GA G RG P G +G G + E G AGP A+GE Sbjct: 467 DGSPGEPGANGLPGA-AGERG-APGFRGPAGPNGIPGEKGPAGERGAPGPAGP-RGAAGE 523 Query: 317 PG 318 PG Sbjct: 524 PG 525 Score = 36.2 bits (82), Expect = 0.098 Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 26/133 (19%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P+G DG PG G G PG GP P + P GG Sbjct: 583 PKGNDGA----PGKNGERGGPGGPGPQGP-PGKNGETGPQG--PPGPTGP--------GG 627 Query: 250 EEGGRPPEADDPVPGGQARNG--AGGGPRGQT--PNHNQQDGDSGSLGSPSASRESLVKG 305 ++G P PG Q G GGP G+ P GD+G+ G+P ++ G Sbjct: 628 DKGDTGP------PGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG 681 Query: 306 RAGPDTSASGEPG 318 GP +G PG Sbjct: 682 ERGP-PGLAGAPG 693 Score = 35.0 bits (79), Expect = 0.22 Identities = 44/153 (28%), Positives = 50/153 (32%), Gaps = 32/153 (20%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGP-----ASGDPVDSSSPEDA 242 P G G A PGS V G G + PG GP A G P Sbjct: 334 PPGPPGTA-GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG----- 387 Query: 243 CIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT-----------PNHNQQDGDS 289 I G GG+ +PG GA G GP G P N G+ Sbjct: 388 ----INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEP 443 Query: 290 GSLGSPSASRESLVKGRAGPD--TSASGEPGAN 320 G G + V G G D + GEPGAN Sbjct: 444 GPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476 Score = 34.7 bits (78), Expect = 0.29 Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 8/135 (5%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247 PQG G R PG +G G PG GP SG P P A Sbjct: 856 PQGVKG-ERGSPGGPGAAGFPGARGLPGP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913 Query: 248 GGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G G P+ D PG + GA G P P G +G+ G +G Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPP--GAPGPLGIAGITGARGLAGPPGMPGPRGSP 971 Query: 308 GPD--TSASGEPGAN 320 GP SG+PGAN Sbjct: 972 GPQGVKGESGKPGAN 986 >gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo sapiens] Length = 921 Score = 40.4 bits (93), Expect = 0.005 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G G+ R + G + +G G PG + G A GD P +A G Sbjct: 464 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 520 Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301 EG R P+ D +PG R+G G G +G+ P GD+G G P Sbjct: 521 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 579 Query: 302 LVKGRAGP--DTSASGEPG 318 KG AG T A G+PG Sbjct: 580 GAKGVAGEKGSTGAPGKPG 598 Score = 35.0 bits (79), Expect = 0.22 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 19/124 (15%) Query: 200 VPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEAD 259 +P I + + + +G PG++ GP P + I G +G R P+ Sbjct: 255 LPARITPSQTTDERGP----PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGP 300 Query: 260 DPVPGGQARNGAGGGP-RGQTPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSAS 314 PG G G P + TP + DG GS+GS E V G G P Sbjct: 301 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP 360 Query: 315 GEPG 318 G PG Sbjct: 361 GPPG 364 >gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] Length = 1690 Score = 40.4 bits (93), Expect = 0.005 Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 22/117 (18%) Query: 213 KGDGGRHPGDEAANGP--------ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPG 264 KGD PG A GP ASG P + + D + R+ G +G R P+ PG Sbjct: 526 KGD----PGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPG 581 Query: 265 GQARNGAGG--GPRGQT-PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 +G G G +G P + +D G G P G+AGP G PG Sbjct: 582 QPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGP---PGKAGP----VGPPG 631 Score = 35.8 bits (81), Expect = 0.13 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 20/135 (14%) Query: 187 LVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVR 246 LV P G G PG +K V KG G PG+ G S P P D C+ + Sbjct: 218 LVGPPGQPGR----PG-LKGNPGVGVKGQMG-DPGEVGQQG--SPGPTLLVEPPDFCLYK 269 Query: 247 IGGEEGGRPPEADDPVPGGQARNGAGG-GPRGQT--PNHNQQDGDSGSLGSPSASRESLV 303 GE+G + +PG R G G G +G+ P GD GS GSP + Sbjct: 270 --GEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPG---L 324 Query: 304 KGRAGPDTSASGEPG 318 KG G G+PG Sbjct: 325 KGELG----LVGDPG 335 Score = 35.0 bits (79), Expect = 0.22 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%) Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH------PGDEAANGPASGDPVDSSS 238 SS++ G+ + + G + KG+ G PG GP G P S Sbjct: 455 SSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPP-GLPGRQGS 513 Query: 239 PEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298 D + G +G P + PG ++GA G P G+ G+ G S Sbjct: 514 KGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPP-----------GNKGAKGDMVVS 562 Query: 299 RESLVKGRAGPD--TSASGEPGANSK 322 R KG GPD G+PG++ + Sbjct: 563 RVKGHKGERGPDGPPGFPGQPGSHGR 588 Score = 34.7 bits (78), Expect = 0.29 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 13/124 (10%) Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRP 255 R PG S +GD G PG A GP G P + ++ + +G +G + Sbjct: 133 RGKPGMSGHNGS---RGDPG-FPGGRGALGPGGPLGHPGEKGEKGNSVFI-LGAVKGIQG 187 Query: 256 PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS- 314 D +PG GAGG P G T G+ G +G P +KG G Sbjct: 188 DRGDPGLPGLPGSWGAGG-PAGPT----GYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQM 242 Query: 315 GEPG 318 G+PG Sbjct: 243 GDPG 246 Score = 33.1 bits (74), Expect = 0.83 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 212 YKGDGGRHPGDEAANGPASGDPVD---SSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268 + G+ G+ PG E G A G+P + S P D + G +G P D+ ++ Sbjct: 916 FPGERGK-PGAEGCPG-AKGEPGEKGMSGLPGDR---GLRGAKGAIGPPGDEGEMAIISQ 970 Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G G P P + G+ G G+P GR GP GEPG Sbjct: 971 KGTPGEPG--PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPG 1018 Score = 30.8 bits (68), Expect = 4.1 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 8/142 (5%) Query: 185 SSLVSPQGGDGVARAV--PGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPE 240 S L +G G A+ PG A + KG G PGD+ G Sbjct: 941 SGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGR 1000 Query: 241 DACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298 R G G G P E P P G G RG GD G GSP Sbjct: 1001 RGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFI-GFPGLPGDQGEPGSPGPP 1059 Query: 299 RESLVKGRAGPDTSASGEPGAN 320 S + G GP + G+P ++ Sbjct: 1060 GFSGIDGARGPKGN-KGDPASH 1080 Score = 30.8 bits (68), Expect = 4.1 Identities = 33/129 (25%), Positives = 44/129 (34%), Gaps = 16/129 (12%) Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRP-- 255 R PG + +GD G PG GP S SP + + G++G + Sbjct: 1141 RGQPGEMGDPGPRGLQGDPGI-PGPPGIKGP-------SGSPGLNGLHGLKGQKGTKGAS 1192 Query: 256 ------PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309 P +PG + G G P P + G G GS + GRA Sbjct: 1193 GLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPK 1252 Query: 310 DTSASGEPG 318 D G PG Sbjct: 1253 DIPDPGPPG 1261 Score = 30.4 bits (67), Expect = 5.4 Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 24/122 (19%) Query: 201 PGSIKRTASVEYKGDGGRH----PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256 PG + +GD G PG GP G P S P A G G P Sbjct: 1200 PGPVGIPGLKGERGDPGSPGISPPGPRGKKGPP-GPPGSSGPPGPA------GATGRAPK 1252 Query: 257 EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316 + DP P G GPRG G G GS L++G G D G Sbjct: 1253 DIPDPGPPGDQGPPGPDGPRG-------APGPPGLPGS-----VDLLRGEPG-DCGLPGP 1299 Query: 317 PG 318 PG Sbjct: 1300 PG 1301 Score = 29.6 bits (65), Expect = 9.2 Identities = 38/145 (26%), Positives = 46/145 (31%), Gaps = 18/145 (12%) Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACI 244 P G DG + PG R G G H G+ G G P P + Sbjct: 979 PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP-GPPGPPGPPGSTGL 1037 Query: 245 VRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSP------- 295 G G G E P P G + GP+G + G G G P Sbjct: 1038 RGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPG 1097 Query: 296 --SASRESLVKGRAGPDTSASGEPG 318 AS E + G GP + G PG Sbjct: 1098 HFGASGEQGLPGIQGP-RGSPGRPG 1121 >gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo sapiens] Length = 678 Score = 40.4 bits (93), Expect = 0.005 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 P G G+ R + G + +G G PG + G A GD P +A G Sbjct: 221 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 277 Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301 EG R P+ D +PG R+G G G +G+ P GD+G G P Sbjct: 278 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 336 Query: 302 LVKGRAGP--DTSASGEPG 318 KG AG T A G+PG Sbjct: 337 GAKGVAGEKGSTGAPGKPG 355 Score = 34.7 bits (78), Expect = 0.29 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 15/104 (14%) Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQ 278 PG++ GP P + I G +G R P+ PG G G P + Sbjct: 28 PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG 77 Query: 279 TPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSASGEPG 318 TP + DG GS+GS E V G G P G PG Sbjct: 78 TPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPG 121 >gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo sapiens] Length = 1691 Score = 40.0 bits (92), Expect = 0.007 Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%) Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239 F L P G G PG + GD GR G+ GPA G P SS+ Sbjct: 1233 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1288 Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297 D G G + P+ D +PG G G G RG+ P G G +G P Sbjct: 1289 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1344 Query: 298 SRESLVKGRAGPDTSA--SGEPG 318 +KG+AGP S+ G+PG Sbjct: 1345 PGFPGMKGKAGPRGSSGLQGDPG 1367 Score = 33.5 bits (75), Expect = 0.64 Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%) Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241 FS L G G+ R PG + V GD G PG + GP +SG D Sbjct: 1314 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1371 Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296 A V++ G P D +PG GA G G +G P +DG SG G P Sbjct: 1372 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1428 Query: 297 ASRESLVKGRAGPDTSASGEPG 318 A + + G GP G PG Sbjct: 1429 ALGDPGLPGLQGP-PGFEGAPG 1449 Score = 32.3 bits (72), Expect = 1.4 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 200 VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248 +P + +++ KGD G PG G A G P +P I++ + Sbjct: 955 IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1014 Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308 G+ G +PG + +G G P P + G GS G P AS +KG G Sbjct: 1015 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1072 Query: 309 PDTSASGEPG 318 SG PG Sbjct: 1073 QTVEISGSPG 1082 >gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo sapiens] Length = 1690 Score = 40.0 bits (92), Expect = 0.007 Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%) Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239 F L P G G PG + GD GR G+ GPA G P SS+ Sbjct: 1232 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1287 Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297 D G G + P+ D +PG G G G RG+ P G G +G P Sbjct: 1288 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1343 Query: 298 SRESLVKGRAGPDTSA--SGEPG 318 +KG+AGP S+ G+PG Sbjct: 1344 PGFPGMKGKAGPRGSSGLQGDPG 1366 Score = 33.5 bits (75), Expect = 0.64 Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%) Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241 FS L G G+ R PG + V GD G PG + GP +SG D Sbjct: 1313 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1370 Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296 A V++ G P D +PG GA G G +G P +DG SG G P Sbjct: 1371 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1427 Query: 297 ASRESLVKGRAGPDTSASGEPG 318 A + + G GP G PG Sbjct: 1428 ALGDPGLPGLQGP-PGFEGAPG 1448 Score = 32.3 bits (72), Expect = 1.4 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 200 VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248 +P + +++ KGD G PG G A G P +P I++ + Sbjct: 954 IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1013 Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308 G+ G +PG + +G G P P + G GS G P AS +KG G Sbjct: 1014 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1071 Query: 309 PDTSASGEPG 318 SG PG Sbjct: 1072 QTVEISGSPG 1081 >gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] Length = 540 Score = 40.0 bits (92), Expect = 0.007 Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 38/163 (23%) Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRI 247 P G G AR PG + +G G PG + GP G P P + Sbjct: 188 PPGPPG-ARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGP-KGPPGPKGEPG------V 239 Query: 248 GGEEG--GRPPEADDPVPGGQ-------ARNGAGG--GPRGQTPNHNQQDGDSGSLGSPS 296 G++G G P + P P G+ NG G GP+G+ P H DG +G G+P Sbjct: 240 PGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGE-PGHRGTDGAAGPRGAPG 298 Query: 297 ASRE--------------SLVKGRAGPD--TSASGEPGANSKL 323 E +KG GP G PGA +L Sbjct: 299 LKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGEL 341 Score = 38.9 bits (89), Expect = 0.015 Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 23/154 (14%) Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPAS--GDPVDSSSPE 240 S V P G G R PG R G GR +PG +G G + +P Sbjct: 114 SECVCPPGPPG-RRGKPG---RRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPG 169 Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG-QTP----NHNQQDGDSGSLG 293 D G++G P PG + G G GPRG Q P QDG+ G G Sbjct: 170 DFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKG 229 Query: 294 SPSASRESLVKGRAGPDTSAS--------GEPGA 319 P E V G+ G D + S GEPG+ Sbjct: 230 PPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGS 263 >gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] Length = 610 Score = 39.7 bits (91), Expect = 0.009 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KG+ G HPG G G+ + SP + + G EG P VPG + G Sbjct: 475 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 528 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G +G+ ++ GD G LG P V G AGP + + G+PG Sbjct: 529 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 574 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%) Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230 N ++ +L+ P G +PG I + G G PG + GP Sbjct: 400 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 451 Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290 G P D P G +G PP D P PG + NG G +P + G++G Sbjct: 452 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 494 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318 GSP V G GP+ G PG Sbjct: 495 QAGSP-------VPGLPGPE-GPPGPPG 514 Score = 34.7 bits (78), Expect = 0.29 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G +A + + GG+ G G GP+G+ DG G G P E G Sbjct: 320 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 375 Query: 308 GPD--TSASGEPGANSKLLYKASV 329 GPD + GEPG + Y ++ Sbjct: 376 GPDGPKGSKGEPGKGEMVDYNGNI 399 Score = 31.2 bits (69), Expect = 3.2 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KG+ G PG A G A G V E I G +G + E +PG + G Sbjct: 266 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 320 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G + G G G P E+ V G+ GP G+PG Sbjct: 321 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 364 Score = 30.4 bits (67), Expect = 5.4 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275 HPG GP G P P G +G + + +PG ++GA G P Sbjct: 235 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 285 Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318 +G+ P + G GS G P + KG AG GEPG Sbjct: 286 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 337 >gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] Length = 668 Score = 39.7 bits (91), Expect = 0.009 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KG+ G HPG G G+ + SP + + G EG P VPG + G Sbjct: 504 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 557 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G +G+ ++ GD G LG P V G AGP + + G+PG Sbjct: 558 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 603 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%) Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230 N ++ +L+ P G +PG I + G G PG + GP Sbjct: 429 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 480 Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290 G P D P G +G PP D P PG + NG G +P + G++G Sbjct: 481 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 523 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318 GSP V G GP+ G PG Sbjct: 524 QAGSP-------VPGLPGPE-GPPGPPG 543 Score = 34.7 bits (78), Expect = 0.29 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G +A + + GG+ G G GP+G+ DG G G P E G Sbjct: 349 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 404 Query: 308 GPD--TSASGEPGANSKLLYKASV 329 GPD + GEPG + Y ++ Sbjct: 405 GPDGPKGSKGEPGKGEMVDYNGNI 428 Score = 31.2 bits (69), Expect = 3.2 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KG+ G PG A G A G V E I G +G + E +PG + G Sbjct: 295 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 349 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G + G G G P E+ V G+ GP G+PG Sbjct: 350 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 393 Score = 30.4 bits (67), Expect = 5.4 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275 HPG GP G P P G +G + + +PG ++GA G P Sbjct: 264 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 314 Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318 +G+ P + G GS G P + KG AG GEPG Sbjct: 315 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 366 >gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] Length = 690 Score = 39.7 bits (91), Expect = 0.009 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KG+ G HPG G G+ + SP + + G EG P VPG + G Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 579 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G +G+ ++ GD G LG P V G AGP + + G+PG Sbjct: 580 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 625 Score = 35.0 bits (79), Expect = 0.22 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%) Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230 N ++ +L+ P G +PG I + G G PG + GP Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502 Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290 G P D P G +G PP D P PG + NG G +P + G++G Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318 GSP V G GP+ G PG Sbjct: 546 QAGSP-------VPGLPGPE-GPPGPPG 565 Score = 34.7 bits (78), Expect = 0.29 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G +A + + GG+ G G GP+G+ DG G G P E G Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426 Query: 308 GPD--TSASGEPGANSKLLYKASV 329 GPD + GEPG + Y ++ Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450 Score = 31.2 bits (69), Expect = 3.2 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KG+ G PG A G A G V E I G +G + E +PG + G Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G + G G G P E+ V G+ GP G+PG Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415 Score = 30.4 bits (67), Expect = 5.4 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275 HPG GP G P P G +G + + +PG ++GA G P Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336 Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318 +G+ P + G GS G P + KG AG GEPG Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388 >gi|157504499 ankyrin repeat domain 47 [Homo sapiens] Length = 821 Score = 39.7 bits (91), Expect = 0.009 Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 33/175 (18%) Query: 175 TNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS---- 230 T + A S + SP DG P I + S+ K DG PG + ++GP S Sbjct: 415 TESPAEAPSLTQESSPGSMDGDRAVAPAGILK--SIMKKRDGT--PGAQPSSGPKSLQFV 470 Query: 231 ---GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG--AGGGPRGQTPNHNQQ 285 +SSS EDA E GG P PG + +G +GGG Sbjct: 471 GVLNGEYESSSSEDASDSDGDSENGGAEP------PGSSSGSGDDSGGG----------- 513 Query: 286 DGDSGSLGSPSAS--RESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRR 338 DSG+ G PS R+ + A P A G + +L +++ +R R Sbjct: 514 -SDSGTPGPPSGGDIRDPEPEAEAEPQQVAQGRCELSPRLREACVALQRQLSRPR 567 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 39.3 bits (90), Expect = 0.012 Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 22/151 (14%) Query: 192 GGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRIGG 249 G DG + PG I +V KG+ G PG GP G + ++ G Sbjct: 1264 GADG-PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP-GPKGERGEKGESGPSGAAG 1321 Query: 250 EEGGRPPEADDPVPGGQARNGAGG--------GPRGQT--PNHNQQDGDSGSLGSPSASR 299 G + P DD G G G GP GQ P DG+ G GSP + Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG 1381 Query: 300 E---SLVKGRAGPDTSA-----SGEPGANSK 322 E S G+ GP A GE GA + Sbjct: 1382 EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGE 1412 Score = 36.2 bits (82), Expect = 0.098 Identities = 34/119 (28%), Positives = 40/119 (33%), Gaps = 23/119 (19%) Query: 216 GGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-- 273 G R P A G P P A GE+G + P D + G G G Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV 1149 Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--------------DTSASGEPG 318 GP G+ DGD G +G P KG GP + A GEPG Sbjct: 1150 GPPGE-------DGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPG 1201 Score = 32.7 bits (73), Expect = 1.1 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308 GE G P +D G + R G G P P G+ G LG P GR G Sbjct: 829 GEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGP-----PGEKGKLGVPGLPG---YPGRQG 880 Query: 309 PDTSAS--GEPGANSK 322 P S G PGAN + Sbjct: 881 PKGSIGFPGFPGANGE 896 Score = 31.2 bits (69), Expect = 3.2 Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KGD G PG + G G P D P + + G EG P PG + G Sbjct: 1038 KGDPGPAGLPGKDGPPG-LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG 1096 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310 A GP G P G G G A E +G AG D Sbjct: 1097 A-AGPIG-IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD 1134 >gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] Length = 691 Score = 39.3 bits (90), Expect = 0.012 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%) Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230 N ++ +L+ P G +PG I + G G PG + GP Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502 Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290 G P D P G +G PP D P PG + NG G +P + G++G Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318 GSP E+ KG G + G PG Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572 Score = 38.9 bits (89), Expect = 0.015 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 9/108 (8%) Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272 KG+ G HPG G G+ + SP + GE+G E VPG + G Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSPGEK---GEAGEKGNPGAEGLQGVPGPKGEAGLD 580 Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318 G +G+ ++ GD G LG P V G AGP + + G+PG Sbjct: 581 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 626 Score = 34.7 bits (78), Expect = 0.29 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G +A + + GG+ G G GP+G+ DG G G P E G Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426 Query: 308 GPD--TSASGEPGANSKLLYKASV 329 GPD + GEPG + Y ++ Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450 Score = 31.2 bits (69), Expect = 3.2 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KG+ G PG A G A G V E I G +G + E +PG + G Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G + G G G P E+ V G+ GP G+PG Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415 Score = 30.4 bits (67), Expect = 5.4 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275 HPG GP G P P G +G + + +PG ++GA G P Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336 Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318 +G+ P + G GS G P + KG AG GEPG Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388 >gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] Length = 703 Score = 39.3 bits (90), Expect = 0.012 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%) Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230 N ++ +L+ P G +PG I + G G PG + GP Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502 Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290 G P D P G +G PP D P PG + NG G +P + G++G Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545 Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318 GSP E+ KG G + G PG Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572 Score = 34.7 bits (78), Expect = 0.29 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307 G +A + + GG+ G G GP+G+ DG G G P E G Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426 Query: 308 GPD--TSASGEPGANSKLLYKASV 329 GPD + GEPG + Y ++ Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450 Score = 31.2 bits (69), Expect = 3.2 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270 KG+ G PG A G A G V E I G +G + E +PG + G Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371 Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318 G + G G G P E+ V G+ GP G+PG Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415 Score = 30.4 bits (67), Expect = 5.4 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275 HPG GP G P P G +G + + +PG ++GA G P Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336 Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318 +G+ P + G GS G P + KG AG GEPG Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.135 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,112,871 Number of Sequences: 37866 Number of extensions: 1553306 Number of successful extensions: 6583 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 290 Number of HSP's that attempted gapping in prelim test: 5640 Number of HSP's gapped (non-prelim): 1025 length of query: 655 length of database: 18,247,518 effective HSP length: 109 effective length of query: 546 effective length of database: 14,120,124 effective search space: 7709587704 effective search space used: 7709587704 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.