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Search of human proteins with 8923946
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo
sapiens]
(655 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] 1348 0.0
gi|169174355 PREDICTED: similar to sphingomyelin phosphodiestera... 224 1e-58
gi|169172738 PREDICTED: similar to sphingomyelin phosphodiestera... 224 1e-58
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 3e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 3e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 3e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 3e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 3e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 44 6e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 43 8e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 43 8e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 43 8e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 43 8e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 0.001
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.005
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 40 0.005
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.005
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 40 0.007
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 40 0.007
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 40 0.007
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 40 0.009
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 40 0.009
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 40 0.009
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 40 0.009
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.012
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 39 0.012
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 39 0.012
>gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens]
Length = 655
Score = 1348 bits (3489), Expect = 0.0
Identities = 655/655 (100%), Positives = 655/655 (100%)
Query: 1 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60
MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT
Sbjct: 1 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60
Query: 61 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120
ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP
Sbjct: 61 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120
Query: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180
GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS
Sbjct: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180
Query: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240
AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE
Sbjct: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240
Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300
DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE
Sbjct: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300
Query: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360
SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL
Sbjct: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360
Query: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420
CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY
Sbjct: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420
Query: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480
HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ
Sbjct: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480
Query: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540
DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP
Sbjct: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540
Query: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600
GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK
Sbjct: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600
Query: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655
GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA
Sbjct: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655
>gi|169174355 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 224 bits (572), Expect = 1e-58
Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%)
Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377
GA LY+A+ + +R R + A P LDF+CLQEVFD R A +L +
Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185
Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437
L +LYDVG G Q K L+SGLL ASRYP++ + C+P+ +DALASKG
Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245
Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497
+ ++GS +RIVG++ CTHL A ED +R QL L DW F +
Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304
Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557
E+VAF V+ GD NFDNC D +LEQ+H LF ++DPCRLG +++PWA+GT L T+ L
Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364
Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608
+ +P ++ LE E+GR YLA G GR K GRR+DY
Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417
Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649
+ H ++ EVE+ +F T L GLTDH V ++L VS
Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461
Score = 70.1 bits (170), Expect = 6e-12
Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%)
Query: 6 TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65
+PFP L ALH ++ AL+FP YW + +L A
Sbjct: 17 SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47
Query: 66 IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124
+ L LLV P A G W Q RRP+ Y L L W+ PG+ F
Sbjct: 48 LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102
Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167
F TAN+CLLPD AR NL ++Q A+ I GAARP +
Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139
>gi|169172738 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 224 bits (572), Expect = 1e-58
Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%)
Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377
GA LY+A+ + +R R + A P LDF+CLQEVFD R A +L +
Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185
Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437
L +LYDVG G Q K L+SGLL ASRYP++ + C+P+ +DALASKG
Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245
Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497
+ ++GS +RIVG++ CTHL A ED +R QL L DW F +
Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304
Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557
E+VAF V+ GD NFDNC D +LEQ+H LF ++DPCRLG +++PWA+GT L T+ L
Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364
Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608
+ +P ++ LE E+GR YLA G GR K GRR+DY
Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417
Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649
+ H ++ EVE+ +F T L GLTDH V ++L VS
Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461
Score = 70.1 bits (170), Expect = 6e-12
Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%)
Query: 6 TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65
+PFP L ALH ++ AL+FP YW + +L A
Sbjct: 17 SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47
Query: 66 IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124
+ L LLV P A G W Q RRP+ Y L L W+ PG+ F
Sbjct: 48 LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102
Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167
F TAN+CLLPD AR NL ++Q A+ I GAARP +
Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.8 bits (112), Expect = 3e-05
Identities = 49/137 (35%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 190 PQGGDGV--ARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPEDACIV 245
P G +G AR PG +G G PG + GP G + SP A
Sbjct: 462 PAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGP-KGPAGERGSPGPAGPK 520
Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT--PNHNQQDGDSGSLGSPSASRES 301
GE GRP EA +PG + G+ G GP G+T P QDG G G P A ++
Sbjct: 521 GSPGE-AGRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577
Query: 302 LVKGRAGPDTSASGEPG 318
V G GP A+GEPG
Sbjct: 578 GVMGFPGP-KGAAGEPG 593
Score = 40.8 bits (94), Expect = 0.004
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 184 FSSLVSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--------AS 230
F L P G G A + VPG + +G+ G PG+ GP A+
Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGERGVQGPPGPAGPRGAN 700
Query: 231 GDPVDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--TPNHN 283
G P + + DA G +G G P E G + GP+G +P +
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760
Query: 284 QQDGDSGSLGSPSASRESLVKGRAGPD-----TSASGEPG 318
G +G +G P + KG +GP T A G PG
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800
Score = 36.6 bits (83), Expect = 0.075
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 9/135 (6%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G G AR PG G G PG + G A G+P D+ + DA G
Sbjct: 789 PAGPTG-ARGAPGDRGEPGPPGPAGFAGP-PGADGQPG-AKGEPGDAGAKGDAGPPGPAG 845
Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQ----TPNHNQQDGDSGSLGSPSASRESLVKG 305
G P + PG + G+ G P G SG+ G P + +G
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905
Query: 306 RAGP--DTSASGEPG 318
GP +T +G PG
Sbjct: 906 GKGPRGETGPAGRPG 920
Score = 35.8 bits (81), Expect = 0.13
Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPE---DACIVRIGGEEG 252
R PG + G GR PG+ GP A G P + P + G +G
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGR-PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278
Query: 253 GRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310
P PG NGA G GPRG P + G G G+ + G GP
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRG-LPGERGRPGAPGPAGARGNDGATGAAGPPGP- 336
Query: 311 TSASGEPG 318
T +G PG
Sbjct: 337 TGPAGPPG 344
Score = 34.3 bits (77), Expect = 0.37
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDP-VPGGQARNG--AGGG 274
PG A GPA G+P P G +G G P A P PG + +G GG
Sbjct: 376 PGPAGAAGPA-GNPGADGQP---------GAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P G G+SG G+P + ++ KG GP G PG
Sbjct: 426 PPGPK-------GNSGEPGAPGSKGDTGAKGEPGP-VGVQGPPG 461
Score = 34.3 bits (77), Expect = 0.37
Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSPEDACIV 245
P G G A PG I + KG G PG G A G P S +
Sbjct: 840 PPGPAGPA-GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Query: 246 RIGGEEGGRPPEAD--------------DPVPGGQARNGAGGGPRGQ--TPNHNQQDGDS 289
G+EGG+ P + P P G+ + GP G TP G
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958
Query: 290 GSLGSPSASRESLVKGRAGPDTSASGEPG 318
G +G P E G GP SGEPG
Sbjct: 959 GVVGLPGQRGERGFPGLPGP----SGEPG 983
Score = 32.7 bits (73), Expect = 1.1
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 24/138 (17%)
Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKG-DGGRHPGDEAANGPASGDPVDSSSPEDAC 243
P+G G A +PG+ T S G DG P A G P + A
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Query: 244 IVRIGGEEG--GRPPEADDP-VPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300
++ G +G G P +A + VPG G G +DG++G+ G P +
Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----------KDGEAGAQGPPGPAGP 627
Query: 301 SLVKGRAGPDTSASGEPG 318
+ +G GP +G PG
Sbjct: 628 AGERGEQGP----AGSPG 641
Score = 32.7 bits (73), Expect = 1.1
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 213 KGDGG--RHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
+GD G H G GP P SP + G G R P PG NG
Sbjct: 1102 QGDRGIKGHRGFSGLQGP----PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG 1157
Query: 271 AGG-----GPRGQTPNHNQQDGDSGSLGSP 295
G GPRG+T GD+G +G P
Sbjct: 1158 LPGPIGPPGPRGRT-------GDAGPVGPP 1180
Score = 30.4 bits (67), Expect = 5.4
Identities = 41/135 (30%), Positives = 47/135 (34%), Gaps = 13/135 (9%)
Query: 192 GGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEE 251
G DG A A PG+ +G G PG G G P S P GE
Sbjct: 938 GADGPAGA-PGTPGPQGIAGQRGVVGL-PGQRGERG-FPGLPGPSGEPGKQGPSGASGER 994
Query: 252 GGR----PPEADDPVPGGQARNGAGGGP----RGQTPNHNQQDGDSGSLGSPSASRESLV 303
G PP P PG R GA G R +P G++G G P A
Sbjct: 995 GPPGPMGPPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053
Query: 304 KGRAGPDTSASGEPG 318
G GP SG+ G
Sbjct: 1054 PGPVGP-AGKSGDRG 1067
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 28/150 (18%)
Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDA 242
S LV PQG G+ PG + T G G PG + A+G G P SP
Sbjct: 2235 SGLVGPQGSPGL----PGQVGET------GKPGA-PGRDGASGKDGDRGSPGVPGSPGLP 2283
Query: 243 CIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQ------------TPNHNQQDGD 288
V GE G G P +A +PG + GA GG G P + G+
Sbjct: 2284 GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGE 2343
Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPG 318
+G G P E KG GP G+PG
Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGP-KGFKGDPG 2372
Score = 40.4 bits (93), Expect = 0.005
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 29/155 (18%)
Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP----EDACI 244
+ G+ R PG V KGD G PG++ NG +SG D P +
Sbjct: 1653 KAGERGLRGAPGV---RGPVGEKGDQG-DPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRL 1708
Query: 245 VRIG------------GEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDG 287
V G G+EG R P+ D +PG G G GP+G P G
Sbjct: 1709 VDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGD-PGVRGPAG 1767
Query: 288 DSGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
+ G G P S + G+ G SG GA K
Sbjct: 1768 EKGDRGPPGLDGRSGLDGKPGA-AGPSGPNGAAGK 1801
Score = 38.1 bits (87), Expect = 0.026
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 22/110 (20%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KGD GR PG GP D GE+G P D +PG G
Sbjct: 1615 KGDPGR-PGPPGPVGPRGRDGEV-------------GEKGDEGPPGDPGLPGKAGERGLR 1660
Query: 273 GGPRGQTPNHNQQD----GDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G P + P + D G+ G GSP +S +G GP G PG
Sbjct: 1661 GAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGP----PGPPG 1706
Score = 34.3 bits (77), Expect = 0.37
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 9/145 (6%)
Query: 214 GDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG 273
G+ G+ PG NG GDP + + G EG P+ + PG G G
Sbjct: 1833 GEDGK-PGLNGKNGEP-GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPG 1890
Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG--PDTSASGEPGA--NSKLLYKASV 329
P P G G G E+ KG G + GEPG+ N L + +
Sbjct: 1891 LPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAG 1950
Query: 330 VKKAAARRRRHPDEAFDHEVSAFFP 354
+K +A R E +D +F P
Sbjct: 1951 IKASAL---REIVETWDESSGSFLP 1972
Score = 33.9 bits (76), Expect = 0.49
Identities = 45/151 (29%), Positives = 52/151 (34%), Gaps = 45/151 (29%)
Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKGDGGR-----------------HPGDEAANG 227
PQG G A R PG+ R S G+ G PG+ G
Sbjct: 1285 PQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRG 1344
Query: 228 PASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDG 287
P G+P +P IGGE G P DP P G GPRG G
Sbjct: 1345 P-KGEP---GAPGQV----IGGEGPGLPGRKGDPGPSGPP------GPRGPL-------G 1383
Query: 288 DSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
D G G P ++ KG G D G PG
Sbjct: 1384 DPGPRGPPGLPGTAM-KGDKG-DRGERGPPG 1412
Score = 33.5 bits (75), Expect = 0.64
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 26/108 (24%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KG+ GR PGD A GPA P GE+G P G Q G
Sbjct: 1533 KGEPGR-PGDPAVVGPAVAGPK--------------GEKGDVGPAGPRGATGVQGERGPP 1577
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G GD G G P + GRAGP D+ GE G
Sbjct: 1578 G---------LVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKG 1616
Score = 33.5 bits (75), Expect = 0.64
Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSS---PED 241
+ L +G V PG + +G G GD+ G +GDP D S P D
Sbjct: 2513 AGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD-GDKGPRGD-NGDPGDKGSKGEPGD 2570
Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQTPNHNQQDGDSGSLGSPSASRE 300
+ G G P+ PG G G P + P + GD G +G E
Sbjct: 2571 KGSAGLPGLRGLLGPQGQ---PGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGE 2627
Query: 301 SLVKGRAG-----PDTSASGEPG 318
VKG G D +G PG
Sbjct: 2628 RGVKGACGLDGEKGDKGEAGPPG 2650
Score = 32.0 bits (71), Expect = 1.8
Identities = 33/129 (25%), Positives = 43/129 (33%), Gaps = 30/129 (23%)
Query: 220 PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
PG++ GP A G D P GE G P +PG R GA G GP
Sbjct: 1464 PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 276 RGQTPNHNQQD-------------------GDSGSLGSPSASRESLVKGRAGP------- 309
G T ++ G+ G +G + V+G GP
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG 1583
Query: 310 DTSASGEPG 318
D G+PG
Sbjct: 1584 DPGPKGDPG 1592
Score = 31.6 bits (70), Expect = 2.4
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 201 PGSIKRTASVEYKGDG--GRH--PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGR 254
PG SV+ G G G PG + A G ++GD I GE G R
Sbjct: 2087 PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPR 2146
Query: 255 PPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309
+ + +PG + G G GPRG P GD G G+P + G AGP
Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRG-PPGPVGGHGDPGPPGAPG------LAGPAGP 2199
Query: 310 D--TSASGEPG 318
+ GEPG
Sbjct: 2200 QGPSGLKGEPG 2210
Score = 30.8 bits (68), Expect = 4.1
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 190 PQG--GDGVARAVPGSIKRTASVEYKGDGG-RHPGDEAANGPASGDPVDSSSPEDACIVR 246
P+G GD R PG + TA KGD G R P G A G+P
Sbjct: 1378 PRGPLGDPGPRGPPG-LPGTAMKGDKGDRGERGPPGPGEGGIAPGEP------------G 1424
Query: 247 IGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGR 306
+ G G P+ PG + G P G+ G G P A +G
Sbjct: 1425 LPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGF 1484
Query: 307 AGPDTSASGEPG 318
GP +GE G
Sbjct: 1485 PGP-LGEAGEKG 1495
Score = 30.0 bits (66), Expect = 7.0
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
+ G P E GP GD + P + GE G + D PG Q G
Sbjct: 1965 ESSGSFLPVPERRRGP-KGDSGEQGPPGKEGPIGFPGERGLKGDRGD---PGPQGPPGLA 2020
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G RG G SG G P + GRAG +G PG
Sbjct: 2021 LGERGPP-------GPSGLAGEPGKPGIPGLPGRAG-GVGEAGRPG 2058
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 44.7 bits (104), Expect = 3e-04
Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
KGD G+ PG GP PV S +D ++ + G EG RP A P P G
Sbjct: 1104 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 1160
Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
N G RG +P + G+ GS+ SP G GP A GEPG
Sbjct: 1161 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 1203
Score = 30.4 bits (67), Expect = 5.4
Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
+ T S+ A + S DG R G +K KG+ G PG GP
Sbjct: 716 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 774
Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
PV P + + G +G GR E DP PG
Sbjct: 775 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 834
Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
G G P P ++ D G G P
Sbjct: 835 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 863
Score = 30.0 bits (66), Expect = 7.0
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
PG+ G S D P A + + G EG G P P P G+ GP G
Sbjct: 917 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 965
Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
+T G GSLG A KG GP A GE G
Sbjct: 966 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 998
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 44.7 bits (104), Expect = 3e-04
Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
KGD G+ PG GP PV S +D ++ + G EG RP A P P G
Sbjct: 689 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 745
Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
N G RG +P + G+ GS+ SP G GP A GEPG
Sbjct: 746 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 788
Score = 30.4 bits (67), Expect = 5.4
Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
+ T S+ A + S DG R G +K KG+ G PG GP
Sbjct: 301 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 359
Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
PV P + + G +G GR E DP PG
Sbjct: 360 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 419
Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
G G P P ++ D G G P
Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 448
Score = 30.0 bits (66), Expect = 7.0
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
PG+ G S D P A + + G EG G P P P G+ GP G
Sbjct: 502 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 550
Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
+T G GSLG A KG GP A GE G
Sbjct: 551 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 583
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 44.7 bits (104), Expect = 3e-04
Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
KGD G+ PG GP PV S +D ++ + G EG RP A P P G
Sbjct: 869 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 925
Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
N G RG +P + G+ GS+ SP G GP A GEPG
Sbjct: 926 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 968
Score = 30.4 bits (67), Expect = 5.4
Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
+ T S+ A + S DG R G +K KG+ G PG GP
Sbjct: 481 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 539
Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
PV P + + G +G GR E DP PG
Sbjct: 540 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 599
Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
G G P P ++ D G G P
Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 628
Score = 30.0 bits (66), Expect = 7.0
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
PG+ G S D P A + + G EG G P P P G+ GP G
Sbjct: 682 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 730
Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
+T G GSLG A KG GP A GE G
Sbjct: 731 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 763
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 43.5 bits (101), Expect = 6e-04
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 26/141 (18%)
Query: 193 GDGVARAVPGSIKRTASVEYKGDGGRH-----------PGDEAANGPA--SGDPVDSSSP 239
GD PG + KGD G PG++ A G +G P D P
Sbjct: 1211 GDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPP 1270
Query: 240 EDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
D + I G G G P + P P G + GP G+ G SG +G
Sbjct: 1271 GDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKR-------GPSGHMGREGR 1323
Query: 298 SRESLVKGRAGPDTSASGEPG 318
E KG GPD G PG
Sbjct: 1324 EGEKGAKGEPGPD----GPPG 1340
Score = 42.4 bits (98), Expect = 0.001
Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 182 ASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPED 241
A P+GG G P +K PG+ GPA G + S +
Sbjct: 973 AGLRGFPGPKGGPGDPG--PTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSE 1030
Query: 242 ACIVRIG-----GEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGS 294
+ G GE G P D +PG G G GP G+ +GD G +G+
Sbjct: 1031 GPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGE-------EGDKGDVGA 1083
Query: 295 PSASRESLVKGRAGPDTSASGEPG 318
P KG AGP G+PG
Sbjct: 1084 PGHKGSKGDKGDAGP----PGQPG 1103
Score = 38.1 bits (87), Expect = 0.026
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 219 HPG---DEAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGG 273
HPG +E A GP + + ++G G +G R D G + +G G
Sbjct: 498 HPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPG 557
Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKL 323
P Q GD G +G P E +G GP T +GEPG L
Sbjct: 558 -----LPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLL 604
Score = 37.4 bits (85), Expect = 0.044
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG 277
PG GP G P + P I G +G P + PG Q +G+ G GP+G
Sbjct: 598 PGPRGLLGPR-GSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQG 656
Query: 278 --QTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGA 319
TP G+ G G P + G GP + A G PG+
Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGS 702
Score = 31.6 bits (70), Expect = 2.4
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 212 YKGDGGR--HPGD------EAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDP 261
++G GR HPG + GP V + + +G G G P +
Sbjct: 888 HQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQG 947
Query: 262 VPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKGRAGP--DTSASG 315
+PG + R GA G GP G G G G P + +KG GP A+G
Sbjct: 948 LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANG 1007
Query: 316 EPGANSKL 323
PG L
Sbjct: 1008 SPGERGPL 1015
Score = 31.6 bits (70), Expect = 2.4
Identities = 45/141 (31%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 188 VSPQG--GDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP---- 239
V P G GD PG S KGD PGD GP ASG+P P
Sbjct: 1258 VGPTGLPGDLGPPGDPGVSGIDGSPGEKGD----PGDVGGPGPPGASGEPGAPGPPGKRG 1313
Query: 240 EDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
+ R G GE+G + D PG GA G P P + G G +G P
Sbjct: 1314 PSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLR--GIPGPVGEPGL 1371
Query: 298 SRESLVKGRAGPDTSASGEPG 318
G GP SG PG
Sbjct: 1372 LGAPGQMGPPGP-LGPSGLPG 1391
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 43.1 bits (100), Expect = 8e-04
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
R GAA +K SP NT + F QG G+ +++ V GD G
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558
Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
PG + +G G P P + + GE+G + P D PG G G P
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617
Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G G G+P E+ +G T G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659
Score = 35.8 bits (81), Expect = 0.13
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
+G G+ RA PG + KGD G PG + A G A G P
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228
Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
P I G+ G R P PG + GA G P + GD GS+G P
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278
Query: 298 SRESLVKGRAGPD--TSASGEPG 318
G GP A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301
Score = 32.7 bits (73), Expect = 1.1
Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 29/137 (21%)
Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
+ A L P+G G + PG KG+ G +PG + GP G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342
Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--------TP 280
P I+ + G G G P +P P G N GPRG+ TP
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTP 1402
Query: 281 NHNQQDGDSGSLGSPSA 297
+ G+ GS G P +
Sbjct: 1403 GPAGEKGNKGSKGEPES 1419
Score = 32.3 bits (72), Expect = 1.4
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
L P G G V + G RT KGD G PG +G A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293
Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
P + G EG + + G G G G RG T ++ Q+
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353
Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
GD G+ G P +G +GP G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG + GP G+P P + ++ + G G P PG + G+ G
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
P G G G+P A E KG GP + GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 43.1 bits (100), Expect = 8e-04
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
R GAA +K SP NT + F QG G+ +++ V GD G
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558
Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
PG + +G G P P + + GE+G + P D PG G G P
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617
Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G G G+P E+ +G T G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659
Score = 35.8 bits (81), Expect = 0.13
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
+G G+ RA PG + KGD G PG + A G A G P
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228
Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
P I G+ G R P PG + GA G P + GD GS+G P
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278
Query: 298 SRESLVKGRAGPD--TSASGEPG 318
G GP A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301
Score = 35.4 bits (80), Expect = 0.17
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)
Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
+ A L P+G G + PG KG+ G +PG + GP G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342
Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
P I+ + G G G P +P P G N GPRG+ +DG
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398
Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
G+ G KG GP + G PG K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431
Score = 32.3 bits (72), Expect = 1.4
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
L P G G V + G RT KGD G PG +G A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293
Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
P + G EG + + G G G G RG T ++ Q+
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353
Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
GD G+ G P +G +GP G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG + GP G+P P + ++ + G G P PG + G+ G
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
P G G G+P A E KG GP + GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 43.1 bits (100), Expect = 8e-04
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
R GAA +K SP NT + F QG G+ +++ V GD G
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558
Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
PG + +G G P P + + GE+G + P D PG G G P
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617
Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G G G+P E+ +G T G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659
Score = 35.8 bits (81), Expect = 0.13
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
+G G+ RA PG + KGD G PG + A G A G P
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228
Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
P I G+ G R P PG + GA G P + GD GS+G P
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278
Query: 298 SRESLVKGRAGPD--TSASGEPG 318
G GP A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301
Score = 35.4 bits (80), Expect = 0.17
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)
Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
+ A L P+G G + PG KG+ G +PG + GP G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342
Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
P I+ + G G G P +P P G N GPRG+ +DG
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398
Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
G+ G KG GP + G PG K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431
Score = 32.3 bits (72), Expect = 1.4
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
L P G G V + G RT KGD G PG +G A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293
Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
P + G EG + + G G G G RG T ++ Q+
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353
Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
GD G+ G P +G +GP G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG + GP G+P P + ++ + G G P PG + G+ G
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
P G G G+P A E KG GP + GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 43.1 bits (100), Expect = 8e-04
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
R GAA +K SP NT + F QG G+ +++ V GD G
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558
Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
PG + +G G P P + + GE+G + P D PG G G P
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617
Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G G G+P E+ +G T G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659
Score = 35.8 bits (81), Expect = 0.13
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 191 QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
+G G+ RA PG + KGD G PG + A G A G P
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228
Query: 238 SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
P I G+ G R P PG + GA G P + GD GS+G P
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278
Query: 298 SRESLVKGRAGPD--TSASGEPG 318
G GP A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301
Score = 35.4 bits (80), Expect = 0.17
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)
Query: 179 ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
+ A L P+G G + PG KG+ G +PG + GP G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342
Query: 234 VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
P I+ + G G G P +P P G N GPRG+ +DG
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398
Query: 289 SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
G+ G KG GP + G PG K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431
Score = 32.3 bits (72), Expect = 1.4
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
L P G G V + G RT KGD G PG +G A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293
Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
P + G EG + + G G G G RG T ++ Q+
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353
Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
GD G+ G P +G +GP G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG + GP G+P P + ++ + G G P PG + G+ G
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
P G G G+P A E KG GP + GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG + PGS+ V KG+ PG+ GP P +A +GG
Sbjct: 1244 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1285
Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
+G R + + PG GA G P P N GD G G P + + V G
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1345
Query: 306 RAGPDTSASGEPG 318
G D G+PG
Sbjct: 1346 DKGED----GDPG 1354
Score = 37.4 bits (85), Expect = 0.044
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
PGD+ G GDP P A +GG++G G P + P P G+A
Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G RG P +G G G+ + G+ GP +G+PG
Sbjct: 1371 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417
Score = 35.4 bits (80), Expect = 0.17
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG+ + G A G P P A GE+G + P D V G G G
Sbjct: 1071 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1129
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P G +DGD G +G P KG GP G PG
Sbjct: 1130 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1165
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)
Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
V PQG G R +PG + G G PG G GDP
Sbjct: 1407 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1465
Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
++ + G G + + D +PG Q GA G GP G P G G
Sbjct: 1466 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1525
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
+ GS + + G GP G PG +++ ++ RR
Sbjct: 1526 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1568
Score = 33.9 bits (76), Expect = 0.49
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
PG A G SGDP P+ G G + P PG + R GA GG RG
Sbjct: 558 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 602
Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P GD G G P + +G GP G PG
Sbjct: 603 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 640
Score = 33.9 bits (76), Expect = 0.49
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG+ PG + ++G G PG GP P + P + G
Sbjct: 950 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 997
Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
G P + +PG + GA G GP+G + G G G P A +KG
Sbjct: 998 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1057
Query: 306 RAGPDTSASGEPG 318
GP G PG
Sbjct: 1058 GEGP----QGPPG 1066
Score = 32.0 bits (71), Expect = 1.8
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
PG+ G G P P A + G +G P+ + PG Q G G GP
Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716
Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
+G P G G G P A G+ G + A G PG + Y
Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 770
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG + PGS+ V KG+ PG+ GP P +A +GG
Sbjct: 1193 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1234
Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
+G R + + PG GA G P P N GD G G P + + V G
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1294
Query: 306 RAGPDTSASGEPG 318
G D G+PG
Sbjct: 1295 DKGED----GDPG 1303
Score = 37.4 bits (85), Expect = 0.044
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
PGD+ G GDP P A +GG++G G P + P P G+A
Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1319
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G RG P +G G G+ + G+ GP +G+PG
Sbjct: 1320 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366
Score = 35.4 bits (80), Expect = 0.17
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG+ + G A G P P A GE+G + P D V G G G
Sbjct: 1020 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1078
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P G +DGD G +G P KG GP G PG
Sbjct: 1079 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1114
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)
Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
V PQG G R +PG + G G PG G GDP
Sbjct: 1356 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1414
Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
++ + G G + + D +PG Q GA G GP G P G G
Sbjct: 1415 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1474
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
+ GS + + G GP G PG +++ ++ RR
Sbjct: 1475 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1517
Score = 33.9 bits (76), Expect = 0.49
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
PG A G SGDP P+ G G + P PG + R GA GG RG
Sbjct: 507 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 551
Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P GD G G P + +G GP G PG
Sbjct: 552 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 589
Score = 33.9 bits (76), Expect = 0.49
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG+ PG + ++G G PG GP P + P + G
Sbjct: 899 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 946
Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
G P + +PG + GA G GP+G + G G G P A +KG
Sbjct: 947 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1006
Query: 306 RAGPDTSASGEPG 318
GP G PG
Sbjct: 1007 GEGP----QGPPG 1015
Score = 32.0 bits (71), Expect = 1.8
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
PG+ G G P P A + G +G P+ + PG Q G G GP
Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665
Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
+G P G G G P A G+ G + A G PG + Y
Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 719
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG + PGS+ V KG+ PG+ GP P +A +GG
Sbjct: 1232 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1273
Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
+G R + + PG GA G P P N GD G G P + + V G
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1333
Query: 306 RAGPDTSASGEPG 318
G D G+PG
Sbjct: 1334 DKGED----GDPG 1342
Score = 37.4 bits (85), Expect = 0.044
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
PGD+ G GDP P A +GG++G G P + P P G+A
Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1358
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G RG P +G G G+ + G+ GP +G+PG
Sbjct: 1359 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405
Score = 35.4 bits (80), Expect = 0.17
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
PG+ + G A G P P A GE+G + P D V G G G
Sbjct: 1059 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1117
Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P G +DGD G +G P KG GP G PG
Sbjct: 1118 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1153
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)
Query: 188 VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
V PQG G R +PG + G G PG G GDP
Sbjct: 1395 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1453
Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
++ + G G + + D +PG Q GA G GP G P G G
Sbjct: 1454 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1513
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
+ GS + + G GP G PG +++ ++ RR
Sbjct: 1514 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1556
Score = 33.9 bits (76), Expect = 0.49
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
PG A G SGDP P+ G G + P PG + R GA GG RG
Sbjct: 546 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 590
Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P GD G G P + +G GP G PG
Sbjct: 591 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 628
Score = 33.9 bits (76), Expect = 0.49
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G DG+ PG + ++G G PG GP P + P + G
Sbjct: 938 PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 985
Query: 250 EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
G P + +PG + GA G GP+G + G G G P A +KG
Sbjct: 986 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1045
Query: 306 RAGPDTSASGEPG 318
GP G PG
Sbjct: 1046 GEGP----QGPPG 1054
Score = 32.0 bits (71), Expect = 1.8
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
PG+ G G P P A + G +G P+ + PG Q G G GP
Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704
Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
+G P G G G P A G+ G + A G PG + Y
Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 758
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 193 GDGVARAVPGSIKRTASVEYKGDGGRH--------PGDEAANGPA-----SGDPVDSSSP 239
G+ A +PG+ + ++G G + G+ A GPA +G+P P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVP 530
Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGS 294
+ + G GG + PG Q +G G GPRGQ P G G+ G+
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ-PGVMGFPGPKGNDGA 589
Query: 295 PSASRESLVKGRAGPDTSASGEPGANSK 322
P + E G GP G PG N +
Sbjct: 590 PGKNGERGGPGGPGP----QGPPGKNGE 613
Score = 40.8 bits (94), Expect = 0.004
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 201 PGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADD 260
PGS + +G+ GR PG +GP G P G G P+ +D
Sbjct: 545 PGSDGKPGPPGSQGESGR-PGPPGPSGPR-GQP---------------GVMGFPGPKGND 587
Query: 261 PVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD--------TS 312
PG G GGP Q P ++G++G G P + KG GP
Sbjct: 588 GAPGKNGERGGPGGPGPQGP--PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645
Query: 313 ASGEPGANSK 322
G PG N K
Sbjct: 646 TGGPPGENGK 655
Score = 40.0 bits (92), Expect = 0.007
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 213 KGDGGRHPGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEG--------GRPPEADDPV 262
KG+GG PG GP + G+ ++ P A G+ G G P E +
Sbjct: 779 KGEGGA-PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG 837
Query: 263 PGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
P G A G GP G P G+ GS G P A+ +G GP S +G PG
Sbjct: 838 PPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS-NGNPG 891
Score = 38.1 bits (87), Expect = 0.026
Identities = 43/160 (26%), Positives = 52/160 (32%), Gaps = 38/160 (23%)
Query: 190 PQGGDGVA--------------RAVPGSIKRTASVEYKGDGGRH--------PGDEAANG 227
P+GG G A + +PG S KGD G PG + G
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG 762
Query: 228 PAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-----P 280
P G P + P D EGG P P G GP G P
Sbjct: 763 PTGPIGPPGPAGQPGDK-------GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 281 NHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
N + G G G+P E G AGP + +G PG
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855
Score = 38.1 bits (87), Expect = 0.026
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 13/141 (9%)
Query: 193 GDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPASGDPVDSSSPE--DACIV 245
G+G A +PG S +G+ G PG NG G + E +
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839
Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-PNHNQQDGDSGSLGSPSASRESLVK 304
+ G GG P G + G+ GGP P G GS G+P S
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 305 GRAGP-----DTSASGEPGAN 320
G+ GP +T A G PG +
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVS 920
Score = 37.4 bits (85), Expect = 0.044
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247
P+G G + V G + + G+ G PG + G A +G+P +P +
Sbjct: 967 PRGSPG-PQGVKGESGKPGANGLSGERGP-PGPQGLPGLAGTAGEPGRDGNPGSDGLPGR 1024
Query: 248 GGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESL 302
G GG+ ++ PG G G GP G++ + + G +G G+P +
Sbjct: 1025 DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRG-ESGPAGPAGAPGPAGSRG 1083
Query: 303 VKGRAGP--DTSASGEPGA 319
G GP D +GE GA
Sbjct: 1084 APGPQGPRGDKGETGERGA 1102
Score = 37.0 bits (84), Expect = 0.057
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 197 ARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256
AR PG + +G G PG NG A G+P +A I + G +G
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGE-PGK---NG-AKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Query: 257 EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316
+ PG GA G RG P G +G G + E G AGP A+GE
Sbjct: 467 DGSPGEPGANGLPGA-AGERG-APGFRGPAGPNGIPGEKGPAGERGAPGPAGP-RGAAGE 523
Query: 317 PG 318
PG
Sbjct: 524 PG 525
Score = 36.2 bits (82), Expect = 0.098
Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 26/133 (19%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P+G DG PG G G PG GP P + P GG
Sbjct: 583 PKGNDGA----PGKNGERGGPGGPGPQGP-PGKNGETGPQG--PPGPTGP--------GG 627
Query: 250 EEGGRPPEADDPVPGGQARNG--AGGGPRGQT--PNHNQQDGDSGSLGSPSASRESLVKG 305
++G P PG Q G GGP G+ P GD+G+ G+P ++ G
Sbjct: 628 DKGDTGP------PGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG 681
Query: 306 RAGPDTSASGEPG 318
GP +G PG
Sbjct: 682 ERGP-PGLAGAPG 693
Score = 35.0 bits (79), Expect = 0.22
Identities = 44/153 (28%), Positives = 50/153 (32%), Gaps = 32/153 (20%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGP-----ASGDPVDSSSPEDA 242
P G G A PGS V G G + PG GP A G P
Sbjct: 334 PPGPPGTA-GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG----- 387
Query: 243 CIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT-----------PNHNQQDGDS 289
I G GG+ +PG GA G GP G P N G+
Sbjct: 388 ----INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEP 443
Query: 290 GSLGSPSASRESLVKGRAGPD--TSASGEPGAN 320
G G + V G G D + GEPGAN
Sbjct: 444 GPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476
Score = 34.7 bits (78), Expect = 0.29
Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247
PQG G R PG +G G PG GP SG P P A
Sbjct: 856 PQGVKG-ERGSPGGPGAAGFPGARGLPGP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913
Query: 248 GGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G G P+ D PG + GA G P P G +G+ G +G
Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPP--GAPGPLGIAGITGARGLAGPPGMPGPRGSP 971
Query: 308 GPD--TSASGEPGAN 320
GP SG+PGAN
Sbjct: 972 GPQGVKGESGKPGAN 986
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 40.4 bits (93), Expect = 0.005
Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G G+ R + G + +G G PG + G A GD P +A G
Sbjct: 464 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 520
Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301
EG R P+ D +PG R+G G G +G+ P GD+G G P
Sbjct: 521 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 579
Query: 302 LVKGRAGP--DTSASGEPG 318
KG AG T A G+PG
Sbjct: 580 GAKGVAGEKGSTGAPGKPG 598
Score = 35.0 bits (79), Expect = 0.22
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 200 VPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEAD 259
+P I + + + +G PG++ GP P + I G +G R P+
Sbjct: 255 LPARITPSQTTDERGP----PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGP 300
Query: 260 DPVPGGQARNGAGGGP-RGQTPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSAS 314
PG G G P + TP + DG GS+GS E V G G P
Sbjct: 301 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP 360
Query: 315 GEPG 318
G PG
Sbjct: 361 GPPG 364
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 213 KGDGGRHPGDEAANGP--------ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPG 264
KGD PG A GP ASG P + + D + R+ G +G R P+ PG
Sbjct: 526 KGD----PGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPG 581
Query: 265 GQARNGAGG--GPRGQT-PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
+G G G +G P + +D G G P G+AGP G PG
Sbjct: 582 QPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGP---PGKAGP----VGPPG 631
Score = 35.8 bits (81), Expect = 0.13
Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 187 LVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVR 246
LV P G G PG +K V KG G PG+ G S P P D C+ +
Sbjct: 218 LVGPPGQPGR----PG-LKGNPGVGVKGQMG-DPGEVGQQG--SPGPTLLVEPPDFCLYK 269
Query: 247 IGGEEGGRPPEADDPVPGGQARNGAGG-GPRGQT--PNHNQQDGDSGSLGSPSASRESLV 303
GE+G + +PG R G G G +G+ P GD GS GSP +
Sbjct: 270 --GEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPG---L 324
Query: 304 KGRAGPDTSASGEPG 318
KG G G+PG
Sbjct: 325 KGELG----LVGDPG 335
Score = 35.0 bits (79), Expect = 0.22
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH------PGDEAANGPASGDPVDSSS 238
SS++ G+ + + G + KG+ G PG GP G P S
Sbjct: 455 SSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPP-GLPGRQGS 513
Query: 239 PEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298
D + G +G P + PG ++GA G P G+ G+ G S
Sbjct: 514 KGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPP-----------GNKGAKGDMVVS 562
Query: 299 RESLVKGRAGPD--TSASGEPGANSK 322
R KG GPD G+PG++ +
Sbjct: 563 RVKGHKGERGPDGPPGFPGQPGSHGR 588
Score = 34.7 bits (78), Expect = 0.29
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRP 255
R PG S +GD G PG A GP G P + ++ + +G +G +
Sbjct: 133 RGKPGMSGHNGS---RGDPG-FPGGRGALGPGGPLGHPGEKGEKGNSVFI-LGAVKGIQG 187
Query: 256 PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS- 314
D +PG GAGG P G T G+ G +G P +KG G
Sbjct: 188 DRGDPGLPGLPGSWGAGG-PAGPT----GYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQM 242
Query: 315 GEPG 318
G+PG
Sbjct: 243 GDPG 246
Score = 33.1 bits (74), Expect = 0.83
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 212 YKGDGGRHPGDEAANGPASGDPVD---SSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
+ G+ G+ PG E G A G+P + S P D + G +G P D+ ++
Sbjct: 916 FPGERGK-PGAEGCPG-AKGEPGEKGMSGLPGDR---GLRGAKGAIGPPGDEGEMAIISQ 970
Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G G P P + G+ G G+P GR GP GEPG
Sbjct: 971 KGTPGEPG--PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPG 1018
Score = 30.8 bits (68), Expect = 4.1
Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 185 SSLVSPQGGDGVARAV--PGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPE 240
S L +G G A+ PG A + KG G PGD+ G
Sbjct: 941 SGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGR 1000
Query: 241 DACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298
R G G G P E P P G G RG GD G GSP
Sbjct: 1001 RGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFI-GFPGLPGDQGEPGSPGPP 1059
Query: 299 RESLVKGRAGPDTSASGEPGAN 320
S + G GP + G+P ++
Sbjct: 1060 GFSGIDGARGPKGN-KGDPASH 1080
Score = 30.8 bits (68), Expect = 4.1
Identities = 33/129 (25%), Positives = 44/129 (34%), Gaps = 16/129 (12%)
Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRP-- 255
R PG + +GD G PG GP S SP + + G++G +
Sbjct: 1141 RGQPGEMGDPGPRGLQGDPGI-PGPPGIKGP-------SGSPGLNGLHGLKGQKGTKGAS 1192
Query: 256 ------PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309
P +PG + G G P P + G G GS + GRA
Sbjct: 1193 GLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPK 1252
Query: 310 DTSASGEPG 318
D G PG
Sbjct: 1253 DIPDPGPPG 1261
Score = 30.4 bits (67), Expect = 5.4
Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 24/122 (19%)
Query: 201 PGSIKRTASVEYKGDGGRH----PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256
PG + +GD G PG GP G P S P A G G P
Sbjct: 1200 PGPVGIPGLKGERGDPGSPGISPPGPRGKKGPP-GPPGSSGPPGPA------GATGRAPK 1252
Query: 257 EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316
+ DP P G GPRG G G GS L++G G D G
Sbjct: 1253 DIPDPGPPGDQGPPGPDGPRG-------APGPPGLPGS-----VDLLRGEPG-DCGLPGP 1299
Query: 317 PG 318
PG
Sbjct: 1300 PG 1301
Score = 29.6 bits (65), Expect = 9.2
Identities = 38/145 (26%), Positives = 46/145 (31%), Gaps = 18/145 (12%)
Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACI 244
P G DG + PG R G G H G+ G G P P +
Sbjct: 979 PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP-GPPGPPGPPGSTGL 1037
Query: 245 VRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSP------- 295
G G G E P P G + GP+G + G G G P
Sbjct: 1038 RGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPG 1097
Query: 296 --SASRESLVKGRAGPDTSASGEPG 318
AS E + G GP + G PG
Sbjct: 1098 HFGASGEQGLPGIQGP-RGSPGRPG 1121
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 40.4 bits (93), Expect = 0.005
Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
P G G+ R + G + +G G PG + G A GD P +A G
Sbjct: 221 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 277
Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301
EG R P+ D +PG R+G G G +G+ P GD+G G P
Sbjct: 278 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 336
Query: 302 LVKGRAGP--DTSASGEPG 318
KG AG T A G+PG
Sbjct: 337 GAKGVAGEKGSTGAPGKPG 355
Score = 34.7 bits (78), Expect = 0.29
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQ 278
PG++ GP P + I G +G R P+ PG G G P +
Sbjct: 28 PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG 77
Query: 279 TPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSASGEPG 318
TP + DG GS+GS E V G G P G PG
Sbjct: 78 TPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPG 121
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 40.0 bits (92), Expect = 0.007
Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239
F L P G G PG + GD GR G+ GPA G P SS+
Sbjct: 1233 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1288
Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297
D G G + P+ D +PG G G G RG+ P G G +G P
Sbjct: 1289 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1344
Query: 298 SRESLVKGRAGPDTSA--SGEPG 318
+KG+AGP S+ G+PG
Sbjct: 1345 PGFPGMKGKAGPRGSSGLQGDPG 1367
Score = 33.5 bits (75), Expect = 0.64
Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241
FS L G G+ R PG + V GD G PG + GP +SG D
Sbjct: 1314 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1371
Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296
A V++ G P D +PG GA G G +G P +DG SG G P
Sbjct: 1372 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1428
Query: 297 ASRESLVKGRAGPDTSASGEPG 318
A + + G GP G PG
Sbjct: 1429 ALGDPGLPGLQGP-PGFEGAPG 1449
Score = 32.3 bits (72), Expect = 1.4
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 200 VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248
+P + +++ KGD G PG G A G P +P I++ +
Sbjct: 955 IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1014
Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
G+ G +PG + +G G P P + G GS G P AS +KG G
Sbjct: 1015 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1072
Query: 309 PDTSASGEPG 318
SG PG
Sbjct: 1073 QTVEISGSPG 1082
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 40.0 bits (92), Expect = 0.007
Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239
F L P G G PG + GD GR G+ GPA G P SS+
Sbjct: 1232 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1287
Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297
D G G + P+ D +PG G G G RG+ P G G +G P
Sbjct: 1288 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1343
Query: 298 SRESLVKGRAGPDTSA--SGEPG 318
+KG+AGP S+ G+PG
Sbjct: 1344 PGFPGMKGKAGPRGSSGLQGDPG 1366
Score = 33.5 bits (75), Expect = 0.64
Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 184 FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241
FS L G G+ R PG + V GD G PG + GP +SG D
Sbjct: 1313 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1370
Query: 242 ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296
A V++ G P D +PG GA G G +G P +DG SG G P
Sbjct: 1371 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1427
Query: 297 ASRESLVKGRAGPDTSASGEPG 318
A + + G GP G PG
Sbjct: 1428 ALGDPGLPGLQGP-PGFEGAPG 1448
Score = 32.3 bits (72), Expect = 1.4
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 200 VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248
+P + +++ KGD G PG G A G P +P I++ +
Sbjct: 954 IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1013
Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
G+ G +PG + +G G P P + G GS G P AS +KG G
Sbjct: 1014 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1071
Query: 309 PDTSASGEPG 318
SG PG
Sbjct: 1072 QTVEISGSPG 1081
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 40.0 bits (92), Expect = 0.007
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 38/163 (23%)
Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRI 247
P G G AR PG + +G G PG + GP G P P +
Sbjct: 188 PPGPPG-ARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGP-KGPPGPKGEPG------V 239
Query: 248 GGEEG--GRPPEADDPVPGGQ-------ARNGAGG--GPRGQTPNHNQQDGDSGSLGSPS 296
G++G G P + P P G+ NG G GP+G+ P H DG +G G+P
Sbjct: 240 PGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGE-PGHRGTDGAAGPRGAPG 298
Query: 297 ASRE--------------SLVKGRAGPD--TSASGEPGANSKL 323
E +KG GP G PGA +L
Sbjct: 299 LKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGEL 341
Score = 38.9 bits (89), Expect = 0.015
Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPAS--GDPVDSSSPE 240
S V P G G R PG R G GR +PG +G G + +P
Sbjct: 114 SECVCPPGPPG-RRGKPG---RRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPG 169
Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG-QTP----NHNQQDGDSGSLG 293
D G++G P PG + G G GPRG Q P QDG+ G G
Sbjct: 170 DFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKG 229
Query: 294 SPSASRESLVKGRAGPDTSAS--------GEPGA 319
P E V G+ G D + S GEPG+
Sbjct: 230 PPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGS 263
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 39.7 bits (91), Expect = 0.009
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KG+ G HPG G G+ + SP + + G EG P VPG + G
Sbjct: 475 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 528
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G +G+ ++ GD G LG P V G AGP + + G+PG
Sbjct: 529 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 574
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)
Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
N ++ +L+ P G +PG I + G G PG + GP
Sbjct: 400 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 451
Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
G P D P G +G PP D P PG + NG G +P + G++G
Sbjct: 452 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 494
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
GSP V G GP+ G PG
Sbjct: 495 QAGSP-------VPGLPGPE-GPPGPPG 514
Score = 34.7 bits (78), Expect = 0.29
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G +A + + GG+ G G GP+G+ DG G G P E G
Sbjct: 320 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 375
Query: 308 GPD--TSASGEPGANSKLLYKASV 329
GPD + GEPG + Y ++
Sbjct: 376 GPDGPKGSKGEPGKGEMVDYNGNI 399
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KG+ G PG A G A G V E I G +G + E +PG + G
Sbjct: 266 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 320
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G + G G G P E+ V G+ GP G+PG
Sbjct: 321 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 364
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
HPG GP G P P G +G + + +PG ++GA G P
Sbjct: 235 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 285
Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
+G+ P + G GS G P + KG AG GEPG
Sbjct: 286 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 337
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 39.7 bits (91), Expect = 0.009
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KG+ G HPG G G+ + SP + + G EG P VPG + G
Sbjct: 504 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 557
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G +G+ ++ GD G LG P V G AGP + + G+PG
Sbjct: 558 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 603
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)
Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
N ++ +L+ P G +PG I + G G PG + GP
Sbjct: 429 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 480
Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
G P D P G +G PP D P PG + NG G +P + G++G
Sbjct: 481 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 523
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
GSP V G GP+ G PG
Sbjct: 524 QAGSP-------VPGLPGPE-GPPGPPG 543
Score = 34.7 bits (78), Expect = 0.29
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G +A + + GG+ G G GP+G+ DG G G P E G
Sbjct: 349 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 404
Query: 308 GPD--TSASGEPGANSKLLYKASV 329
GPD + GEPG + Y ++
Sbjct: 405 GPDGPKGSKGEPGKGEMVDYNGNI 428
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KG+ G PG A G A G V E I G +G + E +PG + G
Sbjct: 295 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 349
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G + G G G P E+ V G+ GP G+PG
Sbjct: 350 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 393
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
HPG GP G P P G +G + + +PG ++GA G P
Sbjct: 264 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 314
Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
+G+ P + G GS G P + KG AG GEPG
Sbjct: 315 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 366
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 39.7 bits (91), Expect = 0.009
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KG+ G HPG G G+ + SP + + G EG P VPG + G
Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 579
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G +G+ ++ GD G LG P V G AGP + + G+PG
Sbjct: 580 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 625
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)
Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
N ++ +L+ P G +PG I + G G PG + GP
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502
Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
G P D P G +G PP D P PG + NG G +P + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
GSP V G GP+ G PG
Sbjct: 546 QAGSP-------VPGLPGPE-GPPGPPG 565
Score = 34.7 bits (78), Expect = 0.29
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G +A + + GG+ G G GP+G+ DG G G P E G
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426
Query: 308 GPD--TSASGEPGANSKLLYKASV 329
GPD + GEPG + Y ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KG+ G PG A G A G V E I G +G + E +PG + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G + G G G P E+ V G+ GP G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
HPG GP G P P G +G + + +PG ++GA G P
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336
Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
+G+ P + G GS G P + KG AG GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 39.7 bits (91), Expect = 0.009
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 175 TNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS---- 230
T + A S + SP DG P I + S+ K DG PG + ++GP S
Sbjct: 415 TESPAEAPSLTQESSPGSMDGDRAVAPAGILK--SIMKKRDGT--PGAQPSSGPKSLQFV 470
Query: 231 ---GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG--AGGGPRGQTPNHNQQ 285
+SSS EDA E GG P PG + +G +GGG
Sbjct: 471 GVLNGEYESSSSEDASDSDGDSENGGAEP------PGSSSGSGDDSGGG----------- 513
Query: 286 DGDSGSLGSPSAS--RESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRR 338
DSG+ G PS R+ + A P A G + +L +++ +R R
Sbjct: 514 -SDSGTPGPPSGGDIRDPEPEAEAEPQQVAQGRCELSPRLREACVALQRQLSRPR 567
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 39.3 bits (90), Expect = 0.012
Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 192 GGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
G DG + PG I +V KG+ G PG GP G + ++ G
Sbjct: 1264 GADG-PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP-GPKGERGEKGESGPSGAAG 1321
Query: 250 EEGGRPPEADDPVPGGQARNGAGG--------GPRGQT--PNHNQQDGDSGSLGSPSASR 299
G + P DD G G G GP GQ P DG+ G GSP +
Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG 1381
Query: 300 E---SLVKGRAGPDTSA-----SGEPGANSK 322
E S G+ GP A GE GA +
Sbjct: 1382 EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGE 1412
Score = 36.2 bits (82), Expect = 0.098
Identities = 34/119 (28%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 216 GGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-- 273
G R P A G P P A GE+G + P D + G G G
Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV 1149
Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--------------DTSASGEPG 318
GP G+ DGD G +G P KG GP + A GEPG
Sbjct: 1150 GPPGE-------DGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPG 1201
Score = 32.7 bits (73), Expect = 1.1
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
GE G P +D G + R G G P P G+ G LG P GR G
Sbjct: 829 GEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGP-----PGEKGKLGVPGLPG---YPGRQG 880
Query: 309 PDTSAS--GEPGANSK 322
P S G PGAN +
Sbjct: 881 PKGSIGFPGFPGANGE 896
Score = 31.2 bits (69), Expect = 3.2
Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KGD G PG + G G P D P + + G EG P PG + G
Sbjct: 1038 KGDPGPAGLPGKDGPPG-LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG 1096
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310
A GP G P G G G A E +G AG D
Sbjct: 1097 A-AGPIG-IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD 1134
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 39.3 bits (90), Expect = 0.012
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%)
Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
N ++ +L+ P G +PG I + G G PG + GP
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502
Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
G P D P G +G PP D P PG + NG G +P + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
GSP E+ KG G + G PG
Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572
Score = 38.9 bits (89), Expect = 0.015
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
KG+ G HPG G G+ + SP + GE+G E VPG + G
Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSPGEK---GEAGEKGNPGAEGLQGVPGPKGEAGLD 580
Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
G +G+ ++ GD G LG P V G AGP + + G+PG
Sbjct: 581 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 626
Score = 34.7 bits (78), Expect = 0.29
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G +A + + GG+ G G GP+G+ DG G G P E G
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426
Query: 308 GPD--TSASGEPGANSKLLYKASV 329
GPD + GEPG + Y ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KG+ G PG A G A G V E I G +G + E +PG + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G + G G G P E+ V G+ GP G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
HPG GP G P P G +G + + +PG ++GA G P
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336
Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
+G+ P + G GS G P + KG AG GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 39.3 bits (90), Expect = 0.012
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%)
Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
N ++ +L+ P G +PG I + G G PG + GP
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502
Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
G P D P G +G PP D P PG + NG G +P + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545
Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
GSP E+ KG G + G PG
Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572
Score = 34.7 bits (78), Expect = 0.29
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
G +A + + GG+ G G GP+G+ DG G G P E G
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426
Query: 308 GPD--TSASGEPGANSKLLYKASV 329
GPD + GEPG + Y ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
KG+ G PG A G A G V E I G +G + E +PG + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371
Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
G + G G G P E+ V G+ GP G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
HPG GP G P P G +G + + +PG ++GA G P
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336
Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
+G+ P + G GS G P + KG AG GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,112,871
Number of Sequences: 37866
Number of extensions: 1553306
Number of successful extensions: 6583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 5640
Number of HSP's gapped (non-prelim): 1025
length of query: 655
length of database: 18,247,518
effective HSP length: 109
effective length of query: 546
effective length of database: 14,120,124
effective search space: 7709587704
effective search space used: 7709587704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.