Guide to the Human Genome
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Search of human proteins with 8923946

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo
sapiens]
         (655 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens]  1348   0.0  
gi|169174355 PREDICTED: similar to sphingomyelin phosphodiestera...   224   1e-58
gi|169172738 PREDICTED: similar to sphingomyelin phosphodiestera...   224   1e-58
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      48   3e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          45   3e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    45   3e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    45   3e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    45   3e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    44   6e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    43   8e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    43   8e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    43   8e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    43   8e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    43   0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    43   0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    43   0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      43   0.001
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s...    40   0.005
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         40   0.005
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s...    40   0.005
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    40   0.007
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    40   0.007
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               40   0.007
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]       40   0.009
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]       40   0.009
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]       40   0.009
gi|157504499 ankyrin repeat domain 47 [Homo sapiens]                   40   0.009
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       39   0.012
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]       39   0.012
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]        39   0.012

>gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens]
          Length = 655

 Score = 1348 bits (3489), Expect = 0.0
 Identities = 655/655 (100%), Positives = 655/655 (100%)

Query: 1   MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60
           MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT
Sbjct: 1   MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT 60

Query: 61  ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120
           ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP
Sbjct: 61  ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP 120

Query: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180
           GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS
Sbjct: 121 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS 180

Query: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240
           AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE
Sbjct: 181 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE 240

Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300
           DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE
Sbjct: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300

Query: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360
           SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL
Sbjct: 301 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL 360

Query: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420
           CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY
Sbjct: 361 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY 420

Query: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480
           HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ
Sbjct: 421 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ 480

Query: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540
           DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP
Sbjct: 481 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP 540

Query: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600
           GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK
Sbjct: 541 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK 600

Query: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655
           GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA
Sbjct: 601 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA 655


>gi|169174355 PREDICTED: similar to sphingomyelin phosphodiesterase
           3, neutral membrane [Homo sapiens]
          Length = 464

 Score =  224 bits (572), Expect = 1e-58
 Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%)

Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377
           GA    LY+A+   +  +R  R         + A  P  LDF+CLQEVFD R A +L  +
Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185

Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437
           L      +LYDVG  G Q     K L+SGLL ASRYP++   + C+P+   +DALASKG 
Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245

Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497
              + ++GS    +RIVG++ CTHL A  ED  +R  QL  L DW   F      +    
Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304

Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557
             E+VAF V+ GD NFDNC  D +LEQ+H LF  ++DPCRLG  +++PWA+GT L T+ L
Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364

Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608
           +     +P   ++ LE E+GR  YLA       G  GR    K   GRR+DY        
Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417

Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649
              + H ++        EVE+ +F T L GLTDH  V ++L VS
Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461



 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%)

Query: 6   TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65
           +PFP   L ALH ++ AL+FP YW + +L A                             
Sbjct: 17  SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47

Query: 66  IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124
           + L LLV   P A  G   W   Q  RRP+ Y       L      L  W+    PG+ F
Sbjct: 48  LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102

Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167
            F TAN+CLLPD  AR  NL ++Q  A+ I      GAARP +
Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139


>gi|169172738 PREDICTED: similar to sphingomyelin phosphodiesterase
           3, neutral membrane [Homo sapiens]
          Length = 464

 Score =  224 bits (572), Expect = 1e-58
 Identities = 137/344 (39%), Positives = 185/344 (53%), Gaps = 27/344 (7%)

Query: 318 GANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQ 377
           GA    LY+A+   +  +R  R         + A  P  LDF+CLQEVFD R A +L  +
Sbjct: 133 GAARPALYRATDCSQPWSRAPRGT-------LVASLPVGLDFVCLQEVFDLRRARRLVNR 185

Query: 378 LHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGA 437
           L      +LYDVG  G Q     K L+SGLL ASRYP++   + C+P+   +DALASKG 
Sbjct: 186 LAPNLGPLLYDVGTLGLQPGRHLKLLDSGLLLASRYPLLRATFRCFPHARGEDALASKGL 245

Query: 438 LFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAAN 497
              + ++GS    +RIVG++ CTHL A  ED  +R  QL  L DW   F      +    
Sbjct: 246 PSAQARLGSL-DGRRIVGFLHCTHLQALAEDGPLRSKQLTPLLDWAEKFGAEKFEADREQ 304

Query: 498 PEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGL 557
             E+VAF V+ GD NFDNC  D +LEQ+H LF  ++DPCRLG  +++PWA+GT L T+ L
Sbjct: 305 SGEVVAFSVLLGDLNFDNCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALGTALSTSVL 364

Query: 558 YDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK-GNGRRIDY-------- 608
           +     +P   ++ LE E+GR  YLA       G  GR    K   GRR+DY        
Sbjct: 365 HQSMASSPKMPRRALEQEKGRHLYLA-------GLPGRSRRAKPWRGRRLDYITYRGVPG 417

Query: 609 ---MLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVS 649
              + H ++        EVE+ +F T L GLTDH  V ++L VS
Sbjct: 418 WLGLRHWDDPQPDSRPQEVEQVTFSTALEGLTDHRAVRLQLRVS 461



 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 41/163 (25%)

Query: 6   TPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCTALFTP 65
           +PFP   L ALH ++ AL+FP YW + +L A                             
Sbjct: 17  SPFPPPALHALHGLARALLFPAYWALHQLQA----------------------------- 47

Query: 66  IYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTG-PGKSF 124
           + L LLV   P A  G   W   Q  RRP+ Y       L      L  W+    PG+ F
Sbjct: 48  LLLLLLVVGPPLALPGLPLWLVPQVWRRPFCY---RSPPLCWAPPAL--WRPPAEPGRCF 102

Query: 125 CFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQI 167
            F TAN+CLLPD  AR  NL ++Q  A+ I      GAARP +
Sbjct: 103 VFLTANLCLLPDGQARFGNLPHSQRPAEAI------GAARPAL 139


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 49/137 (35%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 190 PQGGDGV--ARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPEDACIV 245
           P G +G   AR  PG          +G  G    PG +   GP  G   +  SP  A   
Sbjct: 462 PAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGP-KGPAGERGSPGPAGPK 520

Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT--PNHNQQDGDSGSLGSPSASRES 301
              GE  GRP EA   +PG +   G+ G  GP G+T  P    QDG  G  G P A  ++
Sbjct: 521 GSPGE-AGRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577

Query: 302 LVKGRAGPDTSASGEPG 318
            V G  GP   A+GEPG
Sbjct: 578 GVMGFPGP-KGAAGEPG 593



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 26/160 (16%)

Query: 184 FSSLVSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--------AS 230
           F  L  P G  G A     + VPG +        +G+ G  PG+    GP        A+
Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGERGVQGPPGPAGPRGAN 700

Query: 231 GDPVDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--TPNHN 283
           G P +  +  DA      G +G     G P E       G   +    GP+G   +P  +
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760

Query: 284 QQDGDSGSLGSPSASRESLVKGRAGPD-----TSASGEPG 318
              G +G +G P  +     KG +GP      T A G PG
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800



 Score = 36.6 bits (83), Expect = 0.075
 Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
           P G  G AR  PG           G  G  PG +   G A G+P D+ +  DA      G
Sbjct: 789 PAGPTG-ARGAPGDRGEPGPPGPAGFAGP-PGADGQPG-AKGEPGDAGAKGDAGPPGPAG 845

Query: 250 EEGGRPPEADDPVPGGQARNGAGGGPRGQ----TPNHNQQDGDSGSLGSPSASRESLVKG 305
             G   P  +   PG +   G+ G P               G SG+ G P     +  +G
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905

Query: 306 RAGP--DTSASGEPG 318
             GP  +T  +G PG
Sbjct: 906 GKGPRGETGPAGRPG 920



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPE---DACIVRIGGEEG 252
           R  PG   +       G  GR PG+    GP  A G P  +  P          + G +G
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGR-PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278

Query: 253 GRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310
              P      PG    NGA G  GPRG  P    + G  G  G+      +   G  GP 
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRG-LPGERGRPGAPGPAGARGNDGATGAAGPPGP- 336

Query: 311 TSASGEPG 318
           T  +G PG
Sbjct: 337 TGPAGPPG 344



 Score = 34.3 bits (77), Expect = 0.37
 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 23/104 (22%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDP-VPGGQARNG--AGGG 274
           PG   A GPA G+P     P         G +G  G P  A  P  PG +  +G    GG
Sbjct: 376 PGPAGAAGPA-GNPGADGQP---------GAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425

Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           P G         G+SG  G+P +  ++  KG  GP     G PG
Sbjct: 426 PPGPK-------GNSGEPGAPGSKGDTGAKGEPGP-VGVQGPPG 461



 Score = 34.3 bits (77), Expect = 0.37
 Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 25/149 (16%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSPEDACIV 245
           P G  G A   PG I    +   KG  G    PG     G A   G P  S +       
Sbjct: 840 PPGPAGPA-GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898

Query: 246 RIGGEEGGRPPEAD--------------DPVPGGQARNGAGGGPRGQ--TPNHNQQDGDS 289
              G+EGG+ P  +               P P G+  +    GP G   TP      G  
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958

Query: 290 GSLGSPSASRESLVKGRAGPDTSASGEPG 318
           G +G P    E    G  GP    SGEPG
Sbjct: 959 GVVGLPGQRGERGFPGLPGP----SGEPG 983



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 24/138 (17%)

Query: 190 PQGGDGVA-----RAVPGSIKRTASVEYKG-DGGRHPGDEAANGPASGDPVDSSSPEDAC 243
           P+G  G A       +PG+   T S    G DG   P   A      G P    +   A 
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578

Query: 244 IVRIGGEEG--GRPPEADDP-VPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE 300
           ++   G +G  G P +A +  VPG     G  G           +DG++G+ G P  +  
Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----------KDGEAGAQGPPGPAGP 627

Query: 301 SLVKGRAGPDTSASGEPG 318
           +  +G  GP    +G PG
Sbjct: 628 AGERGEQGP----AGSPG 641



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 213  KGDGG--RHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
            +GD G   H G     GP    P    SP +       G  G R P      PG    NG
Sbjct: 1102 QGDRGIKGHRGFSGLQGP----PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG 1157

Query: 271  AGG-----GPRGQTPNHNQQDGDSGSLGSP 295
              G     GPRG+T       GD+G +G P
Sbjct: 1158 LPGPIGPPGPRGRT-------GDAGPVGPP 1180



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 41/135 (30%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 192  GGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEE 251
            G DG A A PG+         +G  G  PG     G   G P  S  P         GE 
Sbjct: 938  GADGPAGA-PGTPGPQGIAGQRGVVGL-PGQRGERG-FPGLPGPSGEPGKQGPSGASGER 994

Query: 252  GGR----PPEADDPVPGGQARNGAGGGP----RGQTPNHNQQDGDSGSLGSPSASRESLV 303
            G      PP    P PG   R GA G      R  +P      G++G  G P A      
Sbjct: 995  GPPGPMGPPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053

Query: 304  KGRAGPDTSASGEPG 318
             G  GP    SG+ G
Sbjct: 1054 PGPVGP-AGKSGDRG 1067


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 28/150 (18%)

Query: 185  SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDA 242
            S LV PQG  G+    PG +  T      G  G  PG + A+G     G P    SP   
Sbjct: 2235 SGLVGPQGSPGL----PGQVGET------GKPGA-PGRDGASGKDGDRGSPGVPGSPGLP 2283

Query: 243  CIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQ------------TPNHNQQDGD 288
              V   GE G  G P +A   +PG +   GA GG  G              P    + G+
Sbjct: 2284 GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGE 2343

Query: 289  SGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            +G  G P    E   KG  GP     G+PG
Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGP-KGFKGDPG 2372



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 29/155 (18%)

Query: 191  QGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP----EDACI 244
            + G+   R  PG       V  KGD G  PG++  NG   +SG   D   P        +
Sbjct: 1653 KAGERGLRGAPGV---RGPVGEKGDQG-DPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRL 1708

Query: 245  VRIG------------GEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDG 287
            V  G            G+EG R P+ D  +PG     G  G     GP+G  P      G
Sbjct: 1709 VDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGD-PGVRGPAG 1767

Query: 288  DSGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
            + G  G P     S + G+ G     SG  GA  K
Sbjct: 1768 EKGDRGPPGLDGRSGLDGKPGA-AGPSGPNGAAGK 1801



 Score = 38.1 bits (87), Expect = 0.026
 Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 213  KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
            KGD GR PG     GP   D                GE+G   P  D  +PG     G  
Sbjct: 1615 KGDPGR-PGPPGPVGPRGRDGEV-------------GEKGDEGPPGDPGLPGKAGERGLR 1660

Query: 273  GGPRGQTPNHNQQD----GDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            G P  + P   + D    G+ G  GSP +S     +G  GP     G PG
Sbjct: 1661 GAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGP----PGPPG 1706



 Score = 34.3 bits (77), Expect = 0.37
 Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 214  GDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG 273
            G+ G+ PG    NG   GDP +     +       G EG   P+ +   PG     G  G
Sbjct: 1833 GEDGK-PGLNGKNGEP-GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPG 1890

Query: 274  GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG--PDTSASGEPGA--NSKLLYKASV 329
             P    P      G  G  G      E+  KG  G   +    GEPG+  N   L + + 
Sbjct: 1891 LPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAG 1950

Query: 330  VKKAAARRRRHPDEAFDHEVSAFFP 354
            +K +A    R   E +D    +F P
Sbjct: 1951 IKASAL---REIVETWDESSGSFLP 1972



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 45/151 (29%), Positives = 52/151 (34%), Gaps = 45/151 (29%)

Query: 190  PQGGDGVA-----RAVPGSIKRTASVEYKGDGGR-----------------HPGDEAANG 227
            PQG  G A     R  PG+  R  S    G+ G                   PG+    G
Sbjct: 1285 PQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRG 1344

Query: 228  PASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDG 287
            P  G+P    +P       IGGE  G P    DP P G        GPRG         G
Sbjct: 1345 P-KGEP---GAPGQV----IGGEGPGLPGRKGDPGPSGPP------GPRGPL-------G 1383

Query: 288  DSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            D G  G P     ++ KG  G D    G PG
Sbjct: 1384 DPGPRGPPGLPGTAM-KGDKG-DRGERGPPG 1412



 Score = 33.5 bits (75), Expect = 0.64
 Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 26/108 (24%)

Query: 213  KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
            KG+ GR PGD A  GPA   P               GE+G   P       G Q   G  
Sbjct: 1533 KGEPGR-PGDPAVVGPAVAGPK--------------GEKGDVGPAGPRGATGVQGERGPP 1577

Query: 273  GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
            G             GD G  G P       + GRAGP  D+   GE G
Sbjct: 1578 G---------LVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKG 1616



 Score = 33.5 bits (75), Expect = 0.64
 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 14/143 (9%)

Query: 185  SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSS---PED 241
            + L   +G   V    PG       +  +G  G   GD+   G  +GDP D  S   P D
Sbjct: 2513 AGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD-GDKGPRGD-NGDPGDKGSKGEPGD 2570

Query: 242  ACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQTPNHNQQDGDSGSLGSPSASRE 300
                 + G  G   P+     PG     G  G P +   P    + GD G +G      E
Sbjct: 2571 KGSAGLPGLRGLLGPQGQ---PGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGE 2627

Query: 301  SLVKGRAG-----PDTSASGEPG 318
              VKG  G      D   +G PG
Sbjct: 2628 RGVKGACGLDGEKGDKGEAGPPG 2650



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 33/129 (25%), Positives = 43/129 (33%), Gaps = 30/129 (23%)

Query: 220  PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
            PG++   GP  A G   D   P         GE G   P     +PG   R GA G  GP
Sbjct: 1464 PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523

Query: 276  RGQTPNHNQQD-------------------GDSGSLGSPSASRESLVKGRAGP------- 309
             G T    ++                    G+ G +G       + V+G  GP       
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG 1583

Query: 310  DTSASGEPG 318
            D    G+PG
Sbjct: 1584 DPGPKGDPG 1592



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 20/131 (15%)

Query: 201  PGSIKRTASVEYKGDG--GRH--PGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEGGR 254
            PG      SV+  G G  G    PG + A G   ++GD           I    GE G R
Sbjct: 2087 PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPR 2146

Query: 255  PPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309
              + +  +PG +   G  G     GPRG  P      GD G  G+P       + G AGP
Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRG-PPGPVGGHGDPGPPGAPG------LAGPAGP 2199

Query: 310  D--TSASGEPG 318
               +   GEPG
Sbjct: 2200 QGPSGLKGEPG 2210



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 190  PQG--GDGVARAVPGSIKRTASVEYKGDGG-RHPGDEAANGPASGDPVDSSSPEDACIVR 246
            P+G  GD   R  PG +  TA    KGD G R P      G A G+P             
Sbjct: 1378 PRGPLGDPGPRGPPG-LPGTAMKGDKGDRGERGPPGPGEGGIAPGEP------------G 1424

Query: 247  IGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGR 306
            + G  G   P+     PG +   G         P      G+ G  G P A      +G 
Sbjct: 1425 LPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGF 1484

Query: 307  AGPDTSASGEPG 318
             GP    +GE G
Sbjct: 1485 PGP-LGEAGEKG 1495



 Score = 30.0 bits (66), Expect = 7.0
 Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 213  KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
            +  G   P  E   GP  GD  +   P     +   GE G +    D   PG Q   G  
Sbjct: 1965 ESSGSFLPVPERRRGP-KGDSGEQGPPGKEGPIGFPGERGLKGDRGD---PGPQGPPGLA 2020

Query: 273  GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G RG         G SG  G P       + GRAG     +G PG
Sbjct: 2021 LGERGPP-------GPSGLAGEPGKPGIPGLPGRAG-GVGEAGRPG 2058


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 213  KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
            KGD G+     PG     GP    PV   S +D  ++ + G EG RP  A  P P G   
Sbjct: 1104 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 1160

Query: 269  NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
            N    G RG +P    + G+ GS+ SP         G  GP    A GEPG
Sbjct: 1161 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 1203



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)

Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
           +  T  S+ A +     S    DG  R   G +K       KG+ G  PG     GP   
Sbjct: 716 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 774

Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
                      PV    P    +  + G +G           GR  E  DP     PG  
Sbjct: 775 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 834

Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
              G  G P    P  ++ D   G  G P
Sbjct: 835 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 863



 Score = 30.0 bits (66), Expect = 7.0
 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
           PG+    G  S D      P  A +  + G EG  G P     P P G+       GP G
Sbjct: 917 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 965

Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           +T       G  GSLG   A      KG  GP   A GE G
Sbjct: 966 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 998


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
           KGD G+     PG     GP    PV   S +D  ++ + G EG RP  A  P P G   
Sbjct: 689 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 745

Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
           N    G RG +P    + G+ GS+ SP         G  GP    A GEPG
Sbjct: 746 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 788



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)

Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
           +  T  S+ A +     S    DG  R   G +K       KG+ G  PG     GP   
Sbjct: 301 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 359

Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
                      PV    P    +  + G +G           GR  E  DP     PG  
Sbjct: 360 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 419

Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
              G  G P    P  ++ D   G  G P
Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 448



 Score = 30.0 bits (66), Expect = 7.0
 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
           PG+    G  S D      P  A +  + G EG  G P     P P G+       GP G
Sbjct: 502 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 550

Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           +T       G  GSLG   A      KG  GP   A GE G
Sbjct: 551 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 583


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 213 KGDGGR----HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
           KGD G+     PG     GP    PV   S +D  ++ + G EG RP  A  P P G   
Sbjct: 869 KGDPGKDGVGQPGLPGPPGPPG--PVVYVSEQDGSVLSVPGPEG-RPGFAGFPGPAGPKG 925

Query: 269 NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP-DTSASGEPG 318
           N    G RG +P    + G+ GS+ SP         G  GP    A GEPG
Sbjct: 926 NLGSKGERG-SPGPKGEKGEPGSIFSPDG-------GALGPAQKGAKGEPG 968



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 26/149 (17%)

Query: 172 DSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASG 231
           +  T  S+ A +     S    DG  R   G +K       KG+ G  PG     GP   
Sbjct: 481 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGS 539

Query: 232 D----------PVDSSSPEDACIVRIGGEEG-----------GRPPEADDP----VPGGQ 266
                      PV    P    +  + G +G           GR  E  DP     PG  
Sbjct: 540 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDT 599

Query: 267 ARNGAGGGPRGQTPNHNQQDGDSGSLGSP 295
              G  G P    P  ++ D   G  G P
Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPP 628



 Score = 30.0 bits (66), Expect = 7.0
 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRG 277
           PG+    G  S D      P  A +  + G EG  G P     P P G+       GP G
Sbjct: 682 PGEPGRFGVNSSDV-----PGPAGLPGVPGREGPPGFPGLPGPPGPPGRE------GPPG 730

Query: 278 QTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           +T       G  GSLG   A      KG  GP   A GE G
Sbjct: 731 RT-------GQKGSLGEAGAPGHKGSKGAPGP-AGARGESG 763


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 26/141 (18%)

Query: 193  GDGVARAVPGSIKRTASVEYKGDGGRH-----------PGDEAANGPA--SGDPVDSSSP 239
            GD      PG       +  KGD G             PG++ A G    +G P D   P
Sbjct: 1211 GDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPP 1270

Query: 240  EDACIVRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
             D  +  I G  G  G P +   P P G +      GP G+        G SG +G    
Sbjct: 1271 GDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKR-------GPSGHMGREGR 1323

Query: 298  SRESLVKGRAGPDTSASGEPG 318
              E   KG  GPD    G PG
Sbjct: 1324 EGEKGAKGEPGPD----GPPG 1340



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 182  ASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPED 241
            A       P+GG G     P  +K              PG+    GPA G  +   S  +
Sbjct: 973  AGLRGFPGPKGGPGDPG--PTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSE 1030

Query: 242  ACIVRIG-----GEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGS 294
              +   G     GE G   P   D +PG     G  G  GP G+       +GD G +G+
Sbjct: 1031 GPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGE-------EGDKGDVGA 1083

Query: 295  PSASRESLVKGRAGPDTSASGEPG 318
            P        KG AGP     G+PG
Sbjct: 1084 PGHKGSKGDKGDAGP----PGQPG 1103



 Score = 38.1 bits (87), Expect = 0.026
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 219 HPG---DEAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGG 273
           HPG   +E A GP     +         + ++G  G +G R    D    G +  +G  G
Sbjct: 498 HPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPG 557

Query: 274 GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKL 323
                 P    Q GD G +G P    E   +G  GP   T  +GEPG    L
Sbjct: 558 -----LPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLL 604



 Score = 37.4 bits (85), Expect = 0.044
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG 277
           PG     GP  G P  +  P    I    G +G   P  +   PG Q  +G+ G  GP+G
Sbjct: 598 PGPRGLLGPR-GSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQG 656

Query: 278 --QTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGA 319
              TP      G+ G  G P +       G  GP  +  A G PG+
Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGS 702



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 212  YKGDGGR--HPGD------EAANGPASGDPVDSSSPEDACIVRIG--GEEGGRPPEADDP 261
            ++G  GR  HPG       +   GP     V     +   +  +G  G  G   P  +  
Sbjct: 888  HQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQG 947

Query: 262  VPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKGRAGP--DTSASG 315
            +PG + R GA G  GP G           G  G  G P     + +KG  GP     A+G
Sbjct: 948  LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANG 1007

Query: 316  EPGANSKL 323
             PG    L
Sbjct: 1008 SPGERGPL 1015



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 45/141 (31%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 188  VSPQG--GDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSP---- 239
            V P G  GD      PG      S   KGD    PGD    GP  ASG+P     P    
Sbjct: 1258 VGPTGLPGDLGPPGDPGVSGIDGSPGEKGD----PGDVGGPGPPGASGEPGAPGPPGKRG 1313

Query: 240  EDACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
                + R G  GE+G +     D  PG     GA G P    P   +  G  G +G P  
Sbjct: 1314 PSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLR--GIPGPVGEPGL 1371

Query: 298  SRESLVKGRAGPDTSASGEPG 318
                   G  GP    SG PG
Sbjct: 1372 LGAPGQMGPPGP-LGPSGLPG 1391


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
           R GAA   +K    SP NT +    F      QG  G+      +++    V   GD G 
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558

Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
              PG +  +G   G P     P     + + GE+G + P  D   PG     G  G P 
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617

Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
                     G  G  G+P    E+  +G     T   G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 191  QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
            +G  G+ RA PG      +   KGD G       PG + A G A         G P    
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228

Query: 238  SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
             P       I G+ G R P      PG +   GA G P     +     GD GS+G P  
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278

Query: 298  SRESLVKGRAGPD--TSASGEPG 318
                   G  GP     A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 29/137 (21%)

Query: 179  ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
            + A     L  P+G  G  +  PG          KG+ G +PG   + GP       G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342

Query: 234  VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQ--------TP 280
                 P    I+ + G  G     G P    +P P G   N    GPRG+        TP
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTP 1402

Query: 281  NHNQQDGDSGSLGSPSA 297
                + G+ GS G P +
Sbjct: 1403 GPAGEKGNKGSKGEPES 1419



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
           L  P G  G V   + G   RT     KGD G    PG    +G           A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293

Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
                P    +    G EG +       + G     G  G     G RG T  ++  Q+ 
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353

Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
           GD G+ G P        +G +GP     G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
           PG +   GP       G+P     P +  ++ + G  G   P      PG   + G+ G 
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920

Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
           P           G  G  G+P A  E   KG  GP   +      GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
           R GAA   +K    SP NT +    F      QG  G+      +++    V   GD G 
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558

Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
              PG +  +G   G P     P     + + GE+G + P  D   PG     G  G P 
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617

Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
                     G  G  G+P    E+  +G     T   G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 191  QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
            +G  G+ RA PG      +   KGD G       PG + A G A         G P    
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228

Query: 238  SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
             P       I G+ G R P      PG +   GA G P     +     GD GS+G P  
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278

Query: 298  SRESLVKGRAGPD--TSASGEPG 318
                   G  GP     A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)

Query: 179  ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
            + A     L  P+G  G  +  PG          KG+ G +PG   + GP       G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342

Query: 234  VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
                 P    I+ + G  G     G P    +P P G   N    GPRG+      +DG 
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398

Query: 289  SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
             G+ G          KG  GP   + G PG   K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
           L  P G  G V   + G   RT     KGD G    PG    +G           A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293

Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
                P    +    G EG +       + G     G  G     G RG T  ++  Q+ 
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353

Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
           GD G+ G P        +G +GP     G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
           PG +   GP       G+P     P +  ++ + G  G   P      PG   + G+ G 
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920

Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
           P           G  G  G+P A  E   KG  GP   +      GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
           R GAA   +K    SP NT +    F      QG  G+      +++    V   GD G 
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558

Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
              PG +  +G   G P     P     + + GE+G + P  D   PG     G  G P 
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617

Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
                     G  G  G+P    E+  +G     T   G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 191  QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
            +G  G+ RA PG      +   KGD G       PG + A G A         G P    
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228

Query: 238  SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
             P       I G+ G R P      PG +   GA G P     +     GD GS+G P  
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278

Query: 298  SRESLVKGRAGPD--TSASGEPG 318
                   G  GP     A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)

Query: 179  ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
            + A     L  P+G  G  +  PG          KG+ G +PG   + GP       G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342

Query: 234  VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
                 P    I+ + G  G     G P    +P P G   N    GPRG+      +DG 
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398

Query: 289  SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
             G+ G          KG  GP   + G PG   K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
           L  P G  G V   + G   RT     KGD G    PG    +G           A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293

Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
                P    +    G EG +       + G     G  G     G RG T  ++  Q+ 
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353

Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
           GD G+ G P        +G +GP     G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
           PG +   GP       G+P     P +  ++ + G  G   P      PG   + G+ G 
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920

Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
           P           G  G  G+P A  E   KG  GP   +      GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 159 RNGAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR 218
           R GAA   +K    SP NT +    F      QG  G+      +++    V   GD G 
Sbjct: 503 RQGAAG--LKGSPGSPGNTGLPG--FPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGL 558

Query: 219 H--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR 276
              PG +  +G   G P     P     + + GE+G + P  D   PG     G  G P 
Sbjct: 559 RGQPGRKGLDG-IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPG 617

Query: 277 GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
                     G  G  G+P    E+  +G     T   G PG
Sbjct: 618 YGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG 659



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 191  QGGDGVARAVPGSIKRTASVEYKGDGGRH-----PGDEAANGPAS--------GDPVDSS 237
            +G  G+ RA PG      +   KGD G       PG + A G A         G P    
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPG 1228

Query: 238  SPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSA 297
             P       I G+ G R P      PG +   GA G P     +     GD GS+G P  
Sbjct: 1229 LPGAI----IPGQTGNRGP------PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGP 1278

Query: 298  SRESLVKGRAGPD--TSASGEPG 318
                   G  GP     A G PG
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPG 1301



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 26/154 (16%)

Query: 179  ISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS-----GDP 233
            + A     L  P+G  G  +  PG          KG+ G +PG   + GP       G P
Sbjct: 1294 LGAPGTPGLPGPRGDPGF-QGFPG---------VKGEKG-NPGFLGSIGPPGPIGPKGPP 1342

Query: 234  VDSSSPEDACIVRIGGEEG-----GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGD 288
                 P    I+ + G  G     G P    +P P G   N    GPRG+      +DG 
Sbjct: 1343 GVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP----GKDGK 1398

Query: 289  SGSLGSPSASRESLVKGRAGPDTSASGEPGANSK 322
             G+ G          KG  GP   + G PG   K
Sbjct: 1399 PGTPGPAGEKGNKGSKGEPGP-AGSDGLPGLKGK 1431



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 187 LVSPQGGDG-VARAVPGSIKRTASVEYKGDGGR--HPGDEAANG----------PASGDP 233
           L  P G  G V   + G   RT     KGD G    PG    +G           A GDP
Sbjct: 234 LTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDP 293

Query: 234 VDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHN--QQD 286
                P    +    G EG +       + G     G  G     G RG T  ++  Q+ 
Sbjct: 294 GLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEK 353

Query: 287 GDSGSLGSPSASRESLVKGRAGPDTSASGEPGAN 320
           GD G+ G P        +G +GP     G PG++
Sbjct: 354 GDEGTPGPPGPRGARGPQGPSGP-PGVPGSPGSS 386



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 220 PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
           PG +   GP       G+P     P +  ++ + G  G   P      PG   + G+ G 
Sbjct: 861 PGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGI 920

Query: 275 PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSA-----SGEPG 318
           P           G  G  G+P A  E   KG  GP   +      GEPG
Sbjct: 921 P-----------GVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG  +  PGS+     V  KG+    PG+    GP          P +A    +GG
Sbjct: 1244 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1285

Query: 250  EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
             +G R  + +   PG     GA G P    P  N       GD G  G P  + +  V G
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1345

Query: 306  RAGPDTSASGEPG 318
              G D    G+PG
Sbjct: 1346 DKGED----GDPG 1354



 Score = 37.4 bits (85), Expect = 0.044
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
            PGD+   G        GDP     P  A    +GG++G  G P +   P P G+A     
Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370

Query: 273  GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
             G RG  P     +G  G  G+   +      G+ GP      +G+PG
Sbjct: 1371 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
            PG+  + G A      G P     P  A      GE+G + P   D V G     G  G 
Sbjct: 1071 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1129

Query: 275  PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            P G       +DGD G +G P        KG  GP     G PG
Sbjct: 1130 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1165



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)

Query: 188  VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
            V PQG  G       R +PG +         G  G  PG     G     GDP       
Sbjct: 1407 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1465

Query: 241  DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
               ++ + G  G +  + D  +PG Q   GA G     GP G       P      G  G
Sbjct: 1466 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1525

Query: 291  SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
            + GS   + +    G  GP     G PG   +++    ++     RR
Sbjct: 1526 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1568



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
           PG   A G  SGDP     P+        G  G + P      PG + R GA GG RG  
Sbjct: 558 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 602

Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           P      GD G  G P    +   +G  GP     G PG
Sbjct: 603 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 640



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG+    PG   +     ++G  G  PG     GP    P   + P     +   G
Sbjct: 950  PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 997

Query: 250  EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
              G   P  +  +PG   + GA G  GP+G +         G  G  G P A     +KG
Sbjct: 998  HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1057

Query: 306  RAGPDTSASGEPG 318
              GP     G PG
Sbjct: 1058 GEGP----QGPPG 1066



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
           PG+    G     G P     P  A +    G +G   P+ +   PG Q   G  G  GP
Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716

Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
           +G    P      G  G  G P A       G+ G   +  A G PG    + Y
Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 770


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG  +  PGS+     V  KG+    PG+    GP          P +A    +GG
Sbjct: 1193 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1234

Query: 250  EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
             +G R  + +   PG     GA G P    P  N       GD G  G P  + +  V G
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1294

Query: 306  RAGPDTSASGEPG 318
              G D    G+PG
Sbjct: 1295 DKGED----GDPG 1303



 Score = 37.4 bits (85), Expect = 0.044
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
            PGD+   G        GDP     P  A    +GG++G  G P +   P P G+A     
Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1319

Query: 273  GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
             G RG  P     +G  G  G+   +      G+ GP      +G+PG
Sbjct: 1320 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
            PG+  + G A      G P     P  A      GE+G + P   D V G     G  G 
Sbjct: 1020 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1078

Query: 275  PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            P G       +DGD G +G P        KG  GP     G PG
Sbjct: 1079 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1114



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)

Query: 188  VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
            V PQG  G       R +PG +         G  G  PG     G     GDP       
Sbjct: 1356 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1414

Query: 241  DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
               ++ + G  G +  + D  +PG Q   GA G     GP G       P      G  G
Sbjct: 1415 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1474

Query: 291  SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
            + GS   + +    G  GP     G PG   +++    ++     RR
Sbjct: 1475 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1517



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
           PG   A G  SGDP     P+        G  G + P      PG + R GA GG RG  
Sbjct: 507 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 551

Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           P      GD G  G P    +   +G  GP     G PG
Sbjct: 552 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 589



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG+    PG   +     ++G  G  PG     GP    P   + P     +   G
Sbjct: 899  PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 946

Query: 250  EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
              G   P  +  +PG   + GA G  GP+G +         G  G  G P A     +KG
Sbjct: 947  HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1006

Query: 306  RAGPDTSASGEPG 318
              GP     G PG
Sbjct: 1007 GEGP----QGPPG 1015



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
           PG+    G     G P     P  A +    G +G   P+ +   PG Q   G  G  GP
Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665

Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
           +G    P      G  G  G P A       G+ G   +  A G PG    + Y
Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 719


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG  +  PGS+     V  KG+    PG+    GP          P +A    +GG
Sbjct: 1232 PNGADG-PQGPPGSVGSVGGVGEKGE----PGEAGNPGP----------PGEA---GVGG 1273

Query: 250  EEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQ----DGDSGSLGSPSASRESLVKG 305
             +G R  + +   PG     GA G P    P  N       GD G  G P  + +  V G
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1333

Query: 306  RAGPDTSASGEPG 318
              G D    G+PG
Sbjct: 1334 DKGED----GDPG 1342



 Score = 37.4 bits (85), Expect = 0.044
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEG--GRPPEADDPVPGGQARNGAG 272
            PGD+   G        GDP     P  A    +GG++G  G P +   P P G+A     
Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1358

Query: 273  GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
             G RG  P     +G  G  G+   +      G+ GP      +G+PG
Sbjct: 1359 PGKRG-PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 220  PGDEAANGPAS-----GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGG 274
            PG+  + G A      G P     P  A      GE+G + P   D V G     G  G 
Sbjct: 1059 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG- 1117

Query: 275  PRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
            P G       +DGD G +G P        KG  GP     G PG
Sbjct: 1118 PAGSPG----EDGDKGEIGEPGQKGSKGDKGENGP----PGPPG 1153



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 22/167 (13%)

Query: 188  VSPQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANG--PASGDPVDSSSPE 240
            V PQG  G       R +PG +         G  G  PG     G     GDP       
Sbjct: 1395 VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKG 1453

Query: 241  DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQ-----TPNHNQQDGDSG 290
               ++ + G  G +  + D  +PG Q   GA G     GP G       P      G  G
Sbjct: 1454 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1513

Query: 291  SLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARR 337
            + GS   + +    G  GP     G PG   +++    ++     RR
Sbjct: 1514 NKGSTGPAGQKGDSGLPGP----PGSPGPPGEVIQPLPILSSKKTRR 1556



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT 279
           PG   A G  SGDP     P+        G  G + P      PG + R GA GG RG  
Sbjct: 546 PGSSGAKGE-SGDP----GPQ--------GPRGVQGPPGPTGKPGKRGRPGADGG-RGM- 590

Query: 280 PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           P      GD G  G P    +   +G  GP     G PG
Sbjct: 591 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ-GPPGPPG 628



 Score = 33.9 bits (76), Expect = 0.49
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            P G DG+    PG   +     ++G  G  PG     GP    P   + P     +   G
Sbjct: 938  PPGKDGL----PGHPGQRGETGFQGKTGP-PGPGGVVGPQG--PTGETGP-----IGERG 985

Query: 250  EEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQD--GDSGSLGSPSASRESLVKG 305
              G   P  +  +PG   + GA G  GP+G +         G  G  G P A     +KG
Sbjct: 986  HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1045

Query: 306  RAGPDTSASGEPG 318
              GP     G PG
Sbjct: 1046 GEGP----QGPPG 1054



 Score = 32.0 bits (71), Expect = 1.8
 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 220 PGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GP 275
           PG+    G     G P     P  A +    G +G   P+ +   PG Q   G  G  GP
Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704

Query: 276 RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPGANSKLLY 325
           +G    P      G  G  G P A       G+ G   +  A G PG    + Y
Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 758


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 193 GDGVARAVPGSIKRTASVEYKGDGGRH--------PGDEAANGPA-----SGDPVDSSSP 239
           G+  A  +PG+     +  ++G  G +         G+  A GPA     +G+P     P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVP 530

Query: 240 EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGS 294
               +  + G  GG   +     PG Q  +G  G     GPRGQ P      G  G+ G+
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ-PGVMGFPGPKGNDGA 589

Query: 295 PSASRESLVKGRAGPDTSASGEPGANSK 322
           P  + E    G  GP     G PG N +
Sbjct: 590 PGKNGERGGPGGPGP----QGPPGKNGE 613



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 27/130 (20%)

Query: 201 PGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADD 260
           PGS  +      +G+ GR PG    +GP  G P               G  G   P+ +D
Sbjct: 545 PGSDGKPGPPGSQGESGR-PGPPGPSGPR-GQP---------------GVMGFPGPKGND 587

Query: 261 PVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD--------TS 312
             PG     G  GGP  Q P    ++G++G  G P  +     KG  GP           
Sbjct: 588 GAPGKNGERGGPGGPGPQGP--PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645

Query: 313 ASGEPGANSK 322
             G PG N K
Sbjct: 646 TGGPPGENGK 655



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 213 KGDGGRHPGDEAANGP--ASGDPVDSSSPEDACIVRIGGEEG--------GRPPEADDPV 262
           KG+GG  PG     GP  + G+  ++  P  A      G+ G        G P E  +  
Sbjct: 779 KGEGGA-PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG 837

Query: 263 PGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
           P G A    G GP G  P      G+ GS G P A+     +G  GP  S +G PG
Sbjct: 838 PPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS-NGNPG 891



 Score = 38.1 bits (87), Expect = 0.026
 Identities = 43/160 (26%), Positives = 52/160 (32%), Gaps = 38/160 (23%)

Query: 190 PQGGDGVA--------------RAVPGSIKRTASVEYKGDGGRH--------PGDEAANG 227
           P+GG G A              + +PG      S   KGD G          PG +   G
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG 762

Query: 228 PAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-----P 280
           P    G P  +  P D         EGG P       P G        GP G       P
Sbjct: 763 PTGPIGPPGPAGQPGDK-------GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815

Query: 281 NHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
             N + G  G  G+P    E    G AGP   +  +G PG
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855



 Score = 38.1 bits (87), Expect = 0.026
 Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 193 GDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPASGDPVDSSSPE--DACIV 245
           G+G A  +PG      S   +G+ G       PG    NG   G     +  E  +    
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839

Query: 246 RIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQT-PNHNQQDGDSGSLGSPSASRESLVK 304
            + G  GG  P       G +   G+ GGP     P      G  GS G+P     S   
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899

Query: 305 GRAGP-----DTSASGEPGAN 320
           G+ GP     +T A G PG +
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVS 920



 Score = 37.4 bits (85), Expect = 0.044
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 190  PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247
            P+G  G  + V G   +  +    G+ G  PG +   G A  +G+P    +P    +   
Sbjct: 967  PRGSPG-PQGVKGESGKPGANGLSGERGP-PGPQGLPGLAGTAGEPGRDGNPGSDGLPGR 1024

Query: 248  GGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESL 302
             G  GG+    ++  PG     G  G     GP G++ +   + G +G  G+P  +    
Sbjct: 1025 DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRG-ESGPAGPAGAPGPAGSRG 1083

Query: 303  VKGRAGP--DTSASGEPGA 319
              G  GP  D   +GE GA
Sbjct: 1084 APGPQGPRGDKGETGERGA 1102



 Score = 37.0 bits (84), Expect = 0.057
 Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 197 ARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256
           AR  PG      +   +G  G  PG    NG A G+P       +A I  + G +G    
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGE-PGK---NG-AKGEPGPRGERGEAGIPGVPGAKGEDGK 466

Query: 257 EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316
           +     PG     GA  G RG  P      G +G  G    + E    G AGP   A+GE
Sbjct: 467 DGSPGEPGANGLPGA-AGERG-APGFRGPAGPNGIPGEKGPAGERGAPGPAGP-RGAAGE 523

Query: 317 PG 318
           PG
Sbjct: 524 PG 525



 Score = 36.2 bits (82), Expect = 0.098
 Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 26/133 (19%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
           P+G DG     PG           G  G  PG     GP    P   + P        GG
Sbjct: 583 PKGNDGA----PGKNGERGGPGGPGPQGP-PGKNGETGPQG--PPGPTGP--------GG 627

Query: 250 EEGGRPPEADDPVPGGQARNG--AGGGPRGQT--PNHNQQDGDSGSLGSPSASRESLVKG 305
           ++G   P      PG Q   G    GGP G+   P      GD+G+ G+P    ++   G
Sbjct: 628 DKGDTGP------PGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG 681

Query: 306 RAGPDTSASGEPG 318
             GP    +G PG
Sbjct: 682 ERGP-PGLAGAPG 693



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 44/153 (28%), Positives = 50/153 (32%), Gaps = 32/153 (20%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGP-----ASGDPVDSSSPEDA 242
           P G  G A   PGS      V   G  G +  PG     GP     A G P         
Sbjct: 334 PPGPPGTA-GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG----- 387

Query: 243 CIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQT-----------PNHNQQDGDS 289
               I G  GG+       +PG     GA G  GP G             P  N   G+ 
Sbjct: 388 ----INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEP 443

Query: 290 GSLGSPSASRESLVKGRAGPD--TSASGEPGAN 320
           G  G    +    V G  G D    + GEPGAN
Sbjct: 444 GPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPA--SGDPVDSSSPEDACIVRI 247
           PQG  G  R  PG          +G  G  PG     GP   SG P     P  A     
Sbjct: 856 PQGVKG-ERGSPGGPGAAGFPGARGLPGP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913

Query: 248 GGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
            G  G   P+ D   PG +   GA G P    P      G +G+ G          +G  
Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPP--GAPGPLGIAGITGARGLAGPPGMPGPRGSP 971

Query: 308 GPD--TSASGEPGAN 320
           GP      SG+PGAN
Sbjct: 972 GPQGVKGESGKPGAN 986


>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
           sapiens]
          Length = 921

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
           P G  G+ R + G +        +G  G  PG +   G A GD      P +A      G
Sbjct: 464 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 520

Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301
            EG R       P+ D  +PG   R+G  G  G +G+ P      GD+G  G P      
Sbjct: 521 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 579

Query: 302 LVKGRAGP--DTSASGEPG 318
             KG AG    T A G+PG
Sbjct: 580 GAKGVAGEKGSTGAPGKPG 598



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 200 VPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEAD 259
           +P  I  + + + +G     PG++   GP          P    +  I G +G R P+  
Sbjct: 255 LPARITPSQTTDERGP----PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGP 300

Query: 260 DPVPGGQARNGAGGGP-RGQTPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSAS 314
              PG     G  G P +  TP  +     DG  GS+GS     E  V G  G P     
Sbjct: 301 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP 360

Query: 315 GEPG 318
           G PG
Sbjct: 361 GPPG 364


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 22/117 (18%)

Query: 213 KGDGGRHPGDEAANGP--------ASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPG 264
           KGD    PG   A GP        ASG P +  +  D  + R+ G +G R P+     PG
Sbjct: 526 KGD----PGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPG 581

Query: 265 GQARNGAGG--GPRGQT-PNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
               +G  G  G +G   P  + +D   G  G P         G+AGP     G PG
Sbjct: 582 QPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGP---PGKAGP----VGPPG 631



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 187 LVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVR 246
           LV P G  G     PG +K    V  KG  G  PG+    G  S  P     P D C+ +
Sbjct: 218 LVGPPGQPGR----PG-LKGNPGVGVKGQMG-DPGEVGQQG--SPGPTLLVEPPDFCLYK 269

Query: 247 IGGEEGGRPPEADDPVPGGQARNGAGG-GPRGQT--PNHNQQDGDSGSLGSPSASRESLV 303
             GE+G +       +PG   R G  G G +G+   P      GD GS GSP       +
Sbjct: 270 --GEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPG---L 324

Query: 304 KGRAGPDTSASGEPG 318
           KG  G      G+PG
Sbjct: 325 KGELG----LVGDPG 335



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH------PGDEAANGPASGDPVDSSS 238
           SS++    G+   + + G +        KG+ G        PG     GP  G P    S
Sbjct: 455 SSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPP-GLPGRQGS 513

Query: 239 PEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298
             D  +    G +G   P   +  PG   ++GA G P           G+ G+ G    S
Sbjct: 514 KGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPP-----------GNKGAKGDMVVS 562

Query: 299 RESLVKGRAGPD--TSASGEPGANSK 322
           R    KG  GPD      G+PG++ +
Sbjct: 563 RVKGHKGERGPDGPPGFPGQPGSHGR 588



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 198 RAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRP 255
           R  PG      S   +GD G  PG   A GP    G P +     ++  + +G  +G + 
Sbjct: 133 RGKPGMSGHNGS---RGDPG-FPGGRGALGPGGPLGHPGEKGEKGNSVFI-LGAVKGIQG 187

Query: 256 PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS- 314
              D  +PG     GAGG P G T       G+ G +G P       +KG  G       
Sbjct: 188 DRGDPGLPGLPGSWGAGG-PAGPT----GYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQM 242

Query: 315 GEPG 318
           G+PG
Sbjct: 243 GDPG 246



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 212  YKGDGGRHPGDEAANGPASGDPVD---SSSPEDACIVRIGGEEGGRPPEADDPVPGGQAR 268
            + G+ G+ PG E   G A G+P +   S  P D     + G +G   P  D+      ++
Sbjct: 916  FPGERGK-PGAEGCPG-AKGEPGEKGMSGLPGDR---GLRGAKGAIGPPGDEGEMAIISQ 970

Query: 269  NGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G  G P    P  +   G+ G  G+P         GR GP     GEPG
Sbjct: 971  KGTPGEPG--PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPG 1018



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 185  SSLVSPQGGDGVARAV--PGSIKRTASVEYKGDGGRH--PGDEAANGPASGDPVDSSSPE 240
            S L   +G  G   A+  PG     A +  KG  G    PGD+   G             
Sbjct: 941  SGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGR 1000

Query: 241  DACIVRIG--GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSAS 298
                 R G  G   G P E   P P G        G RG         GD G  GSP   
Sbjct: 1001 RGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFI-GFPGLPGDQGEPGSPGPP 1059

Query: 299  RESLVKGRAGPDTSASGEPGAN 320
              S + G  GP  +  G+P ++
Sbjct: 1060 GFSGIDGARGPKGN-KGDPASH 1080



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 33/129 (25%), Positives = 44/129 (34%), Gaps = 16/129 (12%)

Query: 198  RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRP-- 255
            R  PG +        +GD G  PG     GP       S SP    +  + G++G +   
Sbjct: 1141 RGQPGEMGDPGPRGLQGDPGI-PGPPGIKGP-------SGSPGLNGLHGLKGQKGTKGAS 1192

Query: 256  ------PEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP 309
                  P     +PG +   G  G P    P    + G  G  GS      +   GRA  
Sbjct: 1193 GLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPK 1252

Query: 310  DTSASGEPG 318
            D    G PG
Sbjct: 1253 DIPDPGPPG 1261



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 24/122 (19%)

Query: 201  PGSIKRTASVEYKGDGGRH----PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPP 256
            PG +        +GD G      PG     GP  G P  S  P  A      G  G  P 
Sbjct: 1200 PGPVGIPGLKGERGDPGSPGISPPGPRGKKGPP-GPPGSSGPPGPA------GATGRAPK 1252

Query: 257  EADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGE 316
            +  DP P G        GPRG         G  G  GS       L++G  G D    G 
Sbjct: 1253 DIPDPGPPGDQGPPGPDGPRG-------APGPPGLPGS-----VDLLRGEPG-DCGLPGP 1299

Query: 317  PG 318
            PG
Sbjct: 1300 PG 1301



 Score = 29.6 bits (65), Expect = 9.2
 Identities = 38/145 (26%), Positives = 46/145 (31%), Gaps = 18/145 (12%)

Query: 190  PQGGDGVA-----RAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACI 244
            P G DG       +  PG   R       G  G H G+    G   G P     P    +
Sbjct: 979  PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP-GPPGPPGPPGSTGL 1037

Query: 245  VRIGGEEG--GRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSP------- 295
                G  G  G   E   P P G +      GP+G   +     G  G  G P       
Sbjct: 1038 RGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPG 1097

Query: 296  --SASRESLVKGRAGPDTSASGEPG 318
               AS E  + G  GP   + G PG
Sbjct: 1098 HFGASGEQGLPGIQGP-RGSPGRPG 1121


>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
           sapiens]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
           P G  G+ R + G +        +G  G  PG +   G A GD      P +A      G
Sbjct: 221 PPGAQGL-RGITGIVGDKGEKGARGLDGE-PGPQGLPG-APGDQGQRGPPGEAGPKGDRG 277

Query: 250 EEGGRP------PEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSASRES 301
            EG R       P+ D  +PG   R+G  G  G +G+ P      GD+G  G P      
Sbjct: 278 AEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE-PGKPGPPGDAGLQGLPGVPGIP 336

Query: 302 LVKGRAGP--DTSASGEPG 318
             KG AG    T A G+PG
Sbjct: 337 GAKGVAGEKGSTGAPGKPG 355



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 15/104 (14%)

Query: 220 PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP-RGQ 278
           PG++   GP          P    +  I G +G R P+     PG     G  G P +  
Sbjct: 28  PGEQGPPGP----------PGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG 77

Query: 279 TPNHN---QQDGDSGSLGSPSASRESLVKGRAG-PDTSASGEPG 318
           TP  +     DG  GS+GS     E  V G  G P     G PG
Sbjct: 78  TPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPG 121


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
            sapiens]
          Length = 1691

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 184  FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239
            F  L  P G  G     PG    +      GD GR    G+    GPA   G P  SS+ 
Sbjct: 1233 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1288

Query: 240  EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297
             D       G  G + P+ D  +PG     G  G  G RG+ P      G  G +G P  
Sbjct: 1289 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1344

Query: 298  SRESLVKGRAGPDTSA--SGEPG 318
                 +KG+AGP  S+   G+PG
Sbjct: 1345 PGFPGMKGKAGPRGSSGLQGDPG 1367



 Score = 33.5 bits (75), Expect = 0.64
 Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 184  FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241
            FS L    G  G+ R  PG +     V   GD G  PG +   GP  +SG   D      
Sbjct: 1314 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1371

Query: 242  ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296
            A  V++     G P    D +PG     GA G     G +G  P    +DG SG  G P 
Sbjct: 1372 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1428

Query: 297  ASRESLVKGRAGPDTSASGEPG 318
            A  +  + G  GP     G PG
Sbjct: 1429 ALGDPGLPGLQGP-PGFEGAPG 1449



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 200  VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248
            +P   +  +++  KGD G          PG     G A   G P    +P    I++ + 
Sbjct: 955  IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1014

Query: 249  GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
            G+ G         +PG +  +G  G P    P  +   G  GS G P AS    +KG  G
Sbjct: 1015 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1072

Query: 309  PDTSASGEPG 318
                 SG PG
Sbjct: 1073 QTVEISGSPG 1082


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
            sapiens]
          Length = 1690

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 45/143 (31%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 184  FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRH--PGDEAANGPAS--GDPVDSSSP 239
            F  L  P G  G     PG    +      GD GR    G+    GPA   G P  SS+ 
Sbjct: 1232 FPGLQGPAGLPGA----PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1287

Query: 240  EDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRGQTPNHNQQDGDSGSLGSPSA 297
             D       G  G + P+ D  +PG     G  G  G RG+ P      G  G +G P  
Sbjct: 1288 GDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGE-PGFM---GTPGKVGPPGD 1343

Query: 298  SRESLVKGRAGPDTSA--SGEPG 318
                 +KG+AGP  S+   G+PG
Sbjct: 1344 PGFPGMKGKAGPRGSSGLQGDPG 1366



 Score = 33.5 bits (75), Expect = 0.64
 Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 184  FSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGP--ASGDPVDSSSPED 241
            FS L    G  G+ R  PG +     V   GD G  PG +   GP  +SG   D      
Sbjct: 1313 FSGLPGELGLKGM-RGEPGFMGTPGKVGPPGDPG-FPGMKGKAGPRGSSGLQGDPGQTPT 1370

Query: 242  ACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPS 296
            A  V++     G P    D +PG     GA G     G +G  P    +DG SG  G P 
Sbjct: 1371 AEAVQVPPGPLGLP--GIDGIPGLTGDPGAQGPVGLQGSKG-LPGIPGKDGPSGLPGPPG 1427

Query: 297  ASRESLVKGRAGPDTSASGEPG 318
            A  +  + G  GP     G PG
Sbjct: 1428 ALGDPGLPGLQGP-PGFEGAPG 1448



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 200  VPGSIKRTASVEYKGDGGRH--------PGDEAANGPAS--GDPVDSSSPEDACIVR-IG 248
            +P   +  +++  KGD G          PG     G A   G P    +P    I++ + 
Sbjct: 954  IPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVS 1013

Query: 249  GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
            G+ G         +PG +  +G  G P    P  +   G  GS G P AS    +KG  G
Sbjct: 1014 GKPGPPGFMGIRGLPGLKGSSGITGFPG--MPGESGSQGIRGSPGLPGASGLPGLKGDNG 1071

Query: 309  PDTSASGEPG 318
                 SG PG
Sbjct: 1072 QTVEISGSPG 1081


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 190 PQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRI 247
           P G  G AR  PG   +      +G  G    PG +   GP  G P     P       +
Sbjct: 188 PPGPPG-ARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGP-KGPPGPKGEPG------V 239

Query: 248 GGEEG--GRPPEADDPVPGGQ-------ARNGAGG--GPRGQTPNHNQQDGDSGSLGSPS 296
            G++G  G P +   P P G+         NG  G  GP+G+ P H   DG +G  G+P 
Sbjct: 240 PGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGE-PGHRGTDGAAGPRGAPG 298

Query: 297 ASRE--------------SLVKGRAGPD--TSASGEPGANSKL 323
              E                +KG  GP       G PGA  +L
Sbjct: 299 LKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGEL 341



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 185 SSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPAS--GDPVDSSSPE 240
           S  V P G  G  R  PG   R       G  GR  +PG    +G     G   +  +P 
Sbjct: 114 SECVCPPGPPG-RRGKPG---RRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPG 169

Query: 241 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGG--GPRG-QTP----NHNQQDGDSGSLG 293
           D       G++G   P      PG +   G  G  GPRG Q P        QDG+ G  G
Sbjct: 170 DFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKG 229

Query: 294 SPSASRESLVKGRAGPDTSAS--------GEPGA 319
            P    E  V G+ G D + S        GEPG+
Sbjct: 230 PPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGS 263


>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
          Length = 610

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
           KG+ G HPG     G   G+   + SP    +  + G EG   P     VPG +   G  
Sbjct: 475 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 528

Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
           G  +G+     ++ GD G LG P       V G AGP  +  + G+PG
Sbjct: 529 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 574



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)

Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
           N ++      +L+ P G       +PG I    +    G  G       PG +   GP  
Sbjct: 400 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 451

Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
           G P D   P         G +G  PP  D P PG +  NG  G     +P    + G++G
Sbjct: 452 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 494

Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
             GSP       V G  GP+    G PG
Sbjct: 495 QAGSP-------VPGLPGPE-GPPGPPG 514



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
           G   +A + + GG+   G  G     GP+G+       DG  G  G P    E    G  
Sbjct: 320 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 375

Query: 308 GPD--TSASGEPGANSKLLYKASV 329
           GPD    + GEPG    + Y  ++
Sbjct: 376 GPDGPKGSKGEPGKGEMVDYNGNI 399



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
           KG+ G    PG   A G A G  V     E      I G +G +  E    +PG   + G
Sbjct: 266 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 320

Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G           + G  G  G P    E+ V G+ GP     G+PG
Sbjct: 321 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 364



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
           HPG     GP    G P     P         G +G    + +  +PG   ++GA G P 
Sbjct: 235 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 285

Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
                 +G+   P    + G  GS G P    +   KG AG       GEPG
Sbjct: 286 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 337


>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
          Length = 668

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
           KG+ G HPG     G   G+   + SP    +  + G EG   P     VPG +   G  
Sbjct: 504 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 557

Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
           G  +G+     ++ GD G LG P       V G AGP  +  + G+PG
Sbjct: 558 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 603



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)

Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
           N ++      +L+ P G       +PG I    +    G  G       PG +   GP  
Sbjct: 429 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 480

Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
           G P D   P         G +G  PP  D P PG +  NG  G     +P    + G++G
Sbjct: 481 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 523

Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
             GSP       V G  GP+    G PG
Sbjct: 524 QAGSP-------VPGLPGPE-GPPGPPG 543



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
           G   +A + + GG+   G  G     GP+G+       DG  G  G P    E    G  
Sbjct: 349 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 404

Query: 308 GPD--TSASGEPGANSKLLYKASV 329
           GPD    + GEPG    + Y  ++
Sbjct: 405 GPDGPKGSKGEPGKGEMVDYNGNI 428



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
           KG+ G    PG   A G A G  V     E      I G +G +  E    +PG   + G
Sbjct: 295 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 349

Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G           + G  G  G P    E+ V G+ GP     G+PG
Sbjct: 350 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 393



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
           HPG     GP    G P     P         G +G    + +  +PG   ++GA G P 
Sbjct: 264 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 314

Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
                 +G+   P    + G  GS G P    +   KG AG       GEPG
Sbjct: 315 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 366


>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
          Length = 690

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
           KG+ G HPG     G   G+   + SP    +  + G EG   P     VPG +   G  
Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSP----VPGLPGPEGPPGPPGLQGVPGPKGEAGLD 579

Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
           G  +G+     ++ GD G LG P       V G AGP  +  + G+PG
Sbjct: 580 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 625



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 38/148 (25%)

Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
           N ++      +L+ P G       +PG I    +    G  G       PG +   GP  
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502

Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
           G P D   P         G +G  PP  D P PG +  NG  G     +P    + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545

Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
             GSP       V G  GP+    G PG
Sbjct: 546 QAGSP-------VPGLPGPE-GPPGPPG 565



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
           G   +A + + GG+   G  G     GP+G+       DG  G  G P    E    G  
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426

Query: 308 GPD--TSASGEPGANSKLLYKASV 329
           GPD    + GEPG    + Y  ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
           KG+ G    PG   A G A G  V     E      I G +G +  E    +PG   + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371

Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G           + G  G  G P    E+ V G+ GP     G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
           HPG     GP    G P     P         G +G    + +  +PG   ++GA G P 
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336

Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
                 +G+   P    + G  GS G P    +   KG AG       GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388


>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
          Length = 821

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 33/175 (18%)

Query: 175 TNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPAS---- 230
           T +   A S +   SP   DG     P  I +  S+  K DG   PG + ++GP S    
Sbjct: 415 TESPAEAPSLTQESSPGSMDGDRAVAPAGILK--SIMKKRDGT--PGAQPSSGPKSLQFV 470

Query: 231 ---GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG--AGGGPRGQTPNHNQQ 285
                  +SSS EDA       E GG  P      PG  + +G  +GGG           
Sbjct: 471 GVLNGEYESSSSEDASDSDGDSENGGAEP------PGSSSGSGDDSGGG----------- 513

Query: 286 DGDSGSLGSPSAS--RESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRR 338
             DSG+ G PS    R+   +  A P   A G    + +L      +++  +R R
Sbjct: 514 -SDSGTPGPPSGGDIRDPEPEAEAEPQQVAQGRCELSPRLREACVALQRQLSRPR 567


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 22/151 (14%)

Query: 192  GGDGVARAVPGSIKRTASVEYKGDGGR--HPGDEAANGPASGDPVDSSSPEDACIVRIGG 249
            G DG  +  PG I    +V  KG+ G    PG     GP  G   +     ++      G
Sbjct: 1264 GADG-PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP-GPKGERGEKGESGPSGAAG 1321

Query: 250  EEGGRPPEADDPVPGGQARNGAGG--------GPRGQT--PNHNQQDGDSGSLGSPSASR 299
              G + P  DD   G     G  G        GP GQ   P     DG+ G  GSP  + 
Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG 1381

Query: 300  E---SLVKGRAGPDTSA-----SGEPGANSK 322
            E   S   G+ GP   A      GE GA  +
Sbjct: 1382 EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGE 1412



 Score = 36.2 bits (82), Expect = 0.098
 Identities = 34/119 (28%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 216  GGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGG-- 273
            G R P   A      G P     P  A      GE+G + P   D + G     G  G  
Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV 1149

Query: 274  GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--------------DTSASGEPG 318
            GP G+       DGD G +G P        KG  GP               + A GEPG
Sbjct: 1150 GPPGE-------DGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPG 1201



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 249 GEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAG 308
           GE G   P  +D   G + R G  G P    P      G+ G LG P         GR G
Sbjct: 829 GEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGP-----PGEKGKLGVPGLPG---YPGRQG 880

Query: 309 PDTSAS--GEPGANSK 322
           P  S    G PGAN +
Sbjct: 881 PKGSIGFPGFPGANGE 896



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 213  KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
            KGD G    PG +   G   G P D   P     + + G EG   P      PG +   G
Sbjct: 1038 KGDPGPAGLPGKDGPPG-LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG 1096

Query: 271  AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPD 310
            A  GP G  P      G  G  G   A  E   +G AG D
Sbjct: 1097 A-AGPIG-IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD 1134


>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
          Length = 691

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%)

Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
           N ++      +L+ P G       +PG I    +    G  G       PG +   GP  
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502

Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
           G P D   P         G +G  PP  D P PG +  NG  G     +P    + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545

Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
             GSP    E+  KG  G +    G PG
Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 KGDGGRHPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAG 272
           KG+ G HPG     G   G+   + SP +       GE+G    E    VPG +   G  
Sbjct: 526 KGENG-HPGSPGEKGE-KGETGQAGSPGEK---GEAGEKGNPGAEGLQGVPGPKGEAGLD 580

Query: 273 GGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGP--DTSASGEPG 318
           G  +G+     ++ GD G LG P       V G AGP  +  + G+PG
Sbjct: 581 GA-KGEKGFQGEK-GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPG 626



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
           G   +A + + GG+   G  G     GP+G+       DG  G  G P    E    G  
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426

Query: 308 GPD--TSASGEPGANSKLLYKASV 329
           GPD    + GEPG    + Y  ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
           KG+ G    PG   A G A G  V     E      I G +G +  E    +PG   + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371

Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G           + G  G  G P    E+ V G+ GP     G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
           HPG     GP    G P     P         G +G    + +  +PG   ++GA G P 
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336

Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
                 +G+   P    + G  GS G P    +   KG AG       GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388


>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
          Length = 703

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 31/148 (20%)

Query: 176 NTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR-----HPGDEAANGPAS 230
           N ++      +L+ P G       +PG I    +    G  G       PG +   GP  
Sbjct: 451 NEALQEIRTLALMGPPG-------LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPR- 502

Query: 231 GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSG 290
           G P D   P         G +G  PP  D P PG +  NG  G     +P    + G++G
Sbjct: 503 GKPGDMGPP---------GPQG--PPGKDGP-PGVKGENGHPG-----SPGEKGEKGETG 545

Query: 291 SLGSPSASRESLVKGRAGPDTSASGEPG 318
             GSP    E+  KG  G +    G PG
Sbjct: 546 QAGSPGEKGEAGEKGNPGAE-GLQGVPG 572



 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 253 GRPPEADDPVPGGQARNGAGG-----GPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRA 307
           G   +A + + GG+   G  G     GP+G+       DG  G  G P    E    G  
Sbjct: 371 GEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG----VDGQVGPPGQPGDKGERGAAGEQ 426

Query: 308 GPD--TSASGEPGANSKLLYKASV 329
           GPD    + GEPG    + Y  ++
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNI 450



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 213 KGDGGRH--PGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNG 270
           KG+ G    PG   A G A G  V     E      I G +G +  E    +PG   + G
Sbjct: 317 KGERGMPGMPGKHGAKG-APGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKG 371

Query: 271 AGGGPRGQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPG 318
             G           + G  G  G P    E+ V G+ GP     G+PG
Sbjct: 372 EKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGP----PGQPG 415



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 219 HPGDEAANGPAS--GDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGP- 275
           HPG     GP    G P     P         G +G    + +  +PG   ++GA G P 
Sbjct: 286 HPGLPGPMGPPGLPGPPGPKGDP---------GIQGYHGRKGERGMPGMPGKHGAKGAPG 336

Query: 276 ------RGQ--TPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSAS-GEPG 318
                 +G+   P    + G  GS G P    +   KG AG       GEPG
Sbjct: 337 IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPG 388


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,112,871
Number of Sequences: 37866
Number of extensions: 1553306
Number of successful extensions: 6583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 5640
Number of HSP's gapped (non-prelim): 1025
length of query: 655
length of database: 18,247,518
effective HSP length: 109
effective length of query: 546
effective length of database: 14,120,124
effective search space: 7709587704
effective search space used: 7709587704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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