SMPD3 37084

Name: SMPD3	Sequence: fasta or formatted (655aa)		NCBI GI: 8923946
Description: neutral sphingomyelin phosphodiesterase 3		Referenced in: Sphingomyelin, Ceramides, and Glycolipids
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.6 63 3 C cysteine 3.5 23 2 D aspartate 6.6 43 2 E glutamate 5.6 37 3 F phenylalanine 4.4 29 2 G glycine 9.0 59 3 H histidine 2.0 13 1 I isoleucine 3.2 21 1 K lysine 4.4 29 2 L leucine 9.9 65 2 M methionine 0.8 5 1 N asparagine 3.4 22 2 P proline 6.4 42 2 Q glutamine 3.8 25 2 R arginine 5.6 37 4 S serine 8.7 57 4 T threonine 3.8 25 2 V valine 4.9 32 2 W tryptophan 1.1 7 1 Y tyrosine 3.2 21 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 neutral sphingomyelin phosphodiesterase 3 LOC392275 0.150 PREDICTED: similar to sphingomyelin phosphodiestera... LOC392275 0.150 PREDICTED: similar to sphingomyelin phosphodiestera... COL1A1 0.017 alpha 1 type I collagen preproprotein COL7A1 0.015 alpha 1 type VII collagen precursor COL18A1 0.015 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.015 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL18A1 0.015 alpha 1 type XVIII collagen isoform 1 precursor [Ho... COL5A3 0.014 collagen, type V, alpha 3 preproprotein COL4A3 0.014 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.014 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.014 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.014 alpha 3 type IV collagen isoform 1 precursor COL11A1 0.014 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.014 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.014 alpha 1 type XI collagen isoform A preproprotein [Ho... COL3A1 0.014 collagen type III alpha 1 preproprotein COL9A1 0.011 alpha 1 type IX collagen isoform 1 precursor COL4A4 0.011 alpha 4 type IV collagen precursor COL9A1 0.011 alpha 1 type IX collagen isoform 2 precursor COL4A6 0.011 type IV alpha 6 collagen isoform A precursor COL4A6 0.011 type IV alpha 6 collagen isoform B precursor COL23A1 0.011 collagen, type XXIII, alpha 1 COL13A1 0.011 alpha 1 type XIII collagen isoform 19 COL13A1 0.011 alpha 1 type XIII collagen isoform 15 COL13A1 0.011 alpha 1 type XIII collagen isoform 13 KANK3 0.011 ankyrin repeat domain 47 COL5A1 0.011 alpha 1 type V collagen preproprotein COL13A1 0.011 alpha 1 type XIII collagen isoform 12 COL13A1 0.011 alpha 1 type XIII collagen isoform 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.