Guide to the Human Genome
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Name: C1QTNF5 Sequence: fasta or formatted (243aa) NCBI GI: 14149712
Description:

C1q and tumor necrosis factor related protein 5 precursor

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         19           2
 C cysteine            1.2          3           1
 D aspartate           5.8         14           2
 E glutamate           3.7          9           1
 F phenylalanine       4.9         12           2
 G glycine            15.6         38           2
 H histidine           2.5          6           2
 I isoleucine          2.1          5           1
 K lysine              2.9          7           1
 L leucine             7.8         19           4
 M methionine          0.8          2           1
 N asparagine          1.2          3           1
 P proline            12.8         31           3
 Q glutamine           2.9          7           1
 R arginine            5.3         13           1
 S serine              8.2         20           2
 T threonine           2.9          7           1
 V valine              7.4         18           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.9          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 5 prec... 
ADIPOQ                0.270   adiponectin precursor 
C1QTNF9               0.264   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF7               0.262   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.262   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.262   C1q and tumor necrosis factor related protein 7 iso...
COL10A1               0.260   type X collagen alpha 1 precursor 
C1QTNF9B              0.258   C1q and tumor necrosis factor related protein 9B [Ho...
C1QC                  0.254   complement component 1, q subcomponent, C chain prec...
C1QC                  0.254   complement component 1, q subcomponent, C chain pre...
OTOL1                 0.252   hypothetical protein LOC131149 
C1QTNF2               0.252   C1q and tumor necrosis factor related protein 2 [Hom...
C1QB                  0.231   complement component 1, q subcomponent, B chain prec...
COL8A2                0.229   collagen, type VIII, alpha 2 
COL8A1                0.227   alpha 1 type VIII collagen precursor 
COL8A1                0.227   alpha 1 type VIII collagen precursor 
C1QA                  0.180   complement component 1, q subcomponent, A chain precu...
C1QL4                 0.180   complement component 1, q subcomponent-like 4 
C1QL3                 0.178   complement component 1, q subcomponent-like 3 
C1QL2                 0.170   complement component 1, q subcomponent-like 2 [Homo...
C1QL1                 0.164   complement component 1, q subcomponent-like 1 
C1QTNF3               0.153   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.153   C1q and tumor necrosis factor related protein 3 isof...
COL3A1                0.131   collagen type III alpha 1 preproprotein 
SFTPA2                0.127   surfactant protein A2 
SFTPA2B               0.127   surfactant, pulmonary-associated protein A2 
LOC100293055          0.127   PREDICTED: similar to COL22A1 protein 
COL22A1               0.127   collagen, type XXII, alpha 1 
EMILIN1               0.127   elastin microfibril interfacer 1 
COL23A1               0.125   collagen, type XXIII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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