Guide to the Human Genome
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Name: C1QTNF2 Sequence: fasta or formatted (330aa) NCBI GI: 94818738
Description:

C1q and tumor necrosis factor related protein 2

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         27           4
 C cysteine            2.7          9           1
 D aspartate           5.5         18           2
 E glutamate           3.6         12           2
 F phenylalanine       3.6         12           1
 G glycine            16.1         53           2
 H histidine           2.1          7           1
 I isoleucine          3.3         11           1
 K lysine              6.1         20           2
 L leucine             7.3         24           2
 M methionine          1.8          6           2
 N asparagine          3.0         10           1
 P proline            10.3         34           2
 Q glutamine           2.4          8           1
 R arginine            5.8         19           2
 S serine              5.2         17           2
 T threonine           4.8         16           2
 V valine              3.6         12           1
 W tryptophan          1.5          5           1
 Y tyrosine            3.0         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 2 [Hom... 
C1QTNF7               0.474   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.474   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.474   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF9B              0.258   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF9               0.255   C1q and tumor necrosis factor related protein 9 [Hom...
COL10A1               0.243   type X collagen alpha 1 precursor 
OTOL1                 0.206   hypothetical protein LOC131149 
COL8A2                0.201   collagen, type VIII, alpha 2 
ADIPOQ                0.198   adiponectin precursor 
COL8A1                0.186   alpha 1 type VIII collagen precursor 
COL8A1                0.186   alpha 1 type VIII collagen precursor 
C1QTNF5               0.183   C1q and tumor necrosis factor related protein 5 prec...
C1QB                  0.167   complement component 1, q subcomponent, B chain prec...
C1QC                  0.158   complement component 1, q subcomponent, C chain prec...
C1QC                  0.158   complement component 1, q subcomponent, C chain pre...
C1QL1                 0.157   complement component 1, q subcomponent-like 1 
C1QA                  0.154   complement component 1, q subcomponent, A chain precu...
C1QL3                 0.151   complement component 1, q subcomponent-like 3 
C1QL4                 0.135   complement component 1, q subcomponent-like 4 
C1QL2                 0.135   complement component 1, q subcomponent-like 2 [Homo...
COL1A1                0.132   alpha 1 type I collagen preproprotein 
COL13A1               0.127   alpha 1 type XIII collagen isoform 20 
COL13A1               0.127   alpha 1 type XIII collagen isoform 18 
COL13A1               0.127   alpha 1 type XIII collagen isoform 17 
COL13A1               0.127   alpha 1 type XIII collagen isoform 16 
COL13A1               0.127   alpha 1 type XIII collagen isoform 14 
COL13A1               0.127   alpha 1 type XIII collagen isoform 10 
COL13A1               0.127   alpha 1 type XIII collagen isoform 9 
COL13A1               0.127   alpha 1 type XIII collagen isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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