Guide to the Human Genome
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Name: C1QTNF3 Sequence: fasta or formatted (246aa) NCBI GI: 13569919
Description:

C1q and tumor necrosis factor related protein 3 isoform a

Referenced in:

Collagen
Complement

Other entries for this name:
alt prot [319aa] C1q and tumor necrosis factor related protein 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         11           1
 C cysteine            2.0          5           2
 D aspartate           4.1         10           1
 E glutamate           5.7         14           2
 F phenylalanine       7.3         18           2
 G glycine            14.6         36           2
 H histidine           4.1         10           1
 I isoleucine          2.8          7           2
 K lysine              4.9         12           1
 L leucine             7.3         18           2
 M methionine          4.1         10           2
 N asparagine          5.3         13           2
 P proline             6.9         17           2
 Q glutamine           3.7          9           1
 R arginine            2.8          7           1
 S serine              6.5         16           2
 T threonine           4.1         10           1
 V valine              4.1         10           1
 W tryptophan          1.2          3           1
 Y tyrosine            4.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 3 isof... 
C1QTNF3               0.877   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF2               0.168   C1q and tumor necrosis factor related protein 2 [Hom...
C1QL3                 0.166   complement component 1, q subcomponent-like 3 
C1QL2                 0.166   complement component 1, q subcomponent-like 2 [Homo...
ADIPOQ                0.164   adiponectin precursor 
C1QL1                 0.164   complement component 1, q subcomponent-like 1 
C1QTNF7               0.162   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.162   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.162   C1q and tumor necrosis factor related protein 7 iso...
C1QL4                 0.162   complement component 1, q subcomponent-like 4 
CAPRIN2               0.158   C1q domain containing 1 isoform 1 
CAPRIN2               0.158   C1q domain containing 1 isoform 3 
CAPRIN2               0.158   C1q domain containing 1 isoform 2 
C1QTNF9               0.158   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF9B              0.152   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF6               0.148   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.148   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF5               0.148   C1q and tumor necrosis factor related protein 5 prec...
COL10A1               0.142   type X collagen alpha 1 precursor 
C1QC                  0.136   complement component 1, q subcomponent, C chain prec...
C1QC                  0.136   complement component 1, q subcomponent, C chain pre...
C1QB                  0.132   complement component 1, q subcomponent, B chain prec...
COL8A1                0.130   alpha 1 type VIII collagen precursor 
COL8A1                0.130   alpha 1 type VIII collagen precursor 
OTOL1                 0.126   hypothetical protein LOC131149 
COL8A2                0.125   collagen, type VIII, alpha 2 
C1QA                  0.119   complement component 1, q subcomponent, A chain precu...
COL7A1                0.109   alpha 1 type VII collagen precursor 
C1QTNF1               0.107   C1q and tumor necrosis factor related protein 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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