Guide to the Human Genome
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Name: KRT2 Sequence: fasta or formatted (639aa) NCBI GI: 47132620
Description:

keratin 2

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         31           2
 C cysteine            0.8          5           1
 D aspartate           3.9         25           1
 E glutamate           6.3         40           2
 F phenylalanine       3.9         25           1
 G glycine            21.6        138           6
 H histidine           1.3          8           1
 I isoleucine          4.5         29           2
 K lysine              5.5         35           3
 L leucine             7.0         45           2
 M methionine          1.1          7           1
 N asparagine          3.9         25           2
 P proline             1.3          8           1
 Q glutamine           4.9         31           2
 R arginine            5.0         32           2
 S serine             13.1         84           3
 T threonine           2.7         17           1
 V valine              5.5         35           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.8         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 2 
KRT1                  0.593   keratin 1 
KRT3                  0.545   keratin 3 
KRT76                 0.544   keratin 76 
KRT5                  0.500   keratin 5 
KRT77                 0.488   keratin 77 
KRT6B                 0.486   keratin 6B 
KRT6A                 0.485   keratin 6A 
KRT6C                 0.484   keratin 6C 
KRT4                  0.445   keratin 4 
KRT75                 0.442   keratin 75 
KRT79                 0.426   keratin 6L 
KRT73                 0.418   keratin 73 
KRT71                 0.410   keratin 71 
KRT74                 0.405   keratin 6 irs4 
KRT72                 0.402   keratin 72 isoform 1 
KRT72                 0.402   keratin 72 isoform 1 
KRT8                  0.345   keratin 8 
KRT84                 0.337   keratin, hair, basic, 4 
KRT78                 0.328   keratin 5b 
KRT7                  0.325   keratin 7 
KRT72                 0.309   keratin 72 isoform 2 
KRT85                 0.296   keratin 85 
KRT82                 0.292   keratin 82 
KRT81                 0.292   keratin, hair, basic, 1 
LOC100293351          0.286   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.286   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.286   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.286   keratin 86 
KRT83                 0.283   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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