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Search of human proteins with 83921602
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
(1119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 2243 0.0
gi|20070376 solute carrier family 38, member 10 isoform b [Homo ... 1379 0.0
gi|21361602 solute carrier family 38, member 2 [Homo sapiens] 126 1e-28
gi|5870893 solute carrier family 38, member 3 [Homo sapiens] 106 1e-22
gi|8922692 solute carrier family 38, member 7 [Homo sapiens] 105 2e-22
gi|193788624 solute carrier family 38, member 5 [Homo sapiens] 102 2e-21
gi|24429574 solute carrier family 38, member 6 [Homo sapiens] 94 6e-19
gi|117168277 amino acid transporter system A1 [Homo sapiens] 88 4e-17
gi|117168275 amino acid transporter system A1 [Homo sapiens] 88 4e-17
gi|122937281 solute carrier family 38, member 8 [Homo sapiens] 87 9e-17
gi|27735137 solute carrier family 38, member 11 [Homo sapiens] 86 2e-16
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 77 9e-14
gi|219689132 solute carrier family 38, member 4 [Homo sapiens] 72 4e-12
gi|18482385 solute carrier family 38, member 4 [Homo sapiens] 72 4e-12
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 64 1e-09
gi|17999520 solute carrier family 32, member 1 [Homo sapiens] 63 1e-09
gi|38176300 nestin [Homo sapiens] 63 2e-09
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 63 2e-09
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 62 2e-09
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 62 4e-09
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 59 3e-08
gi|54860105 nadrin isoform 2 [Homo sapiens] 57 7e-08
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 57 1e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 56 2e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 56 2e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 56 2e-07
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 55 3e-07
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 55 3e-07
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 55 3e-07
gi|54860079 nadrin isoform 1 [Homo sapiens] 55 3e-07
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 2243 bits (5811), Expect = 0.0
Identities = 1119/1119 (100%), Positives = 1119/1119 (100%)
Query: 1 MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS 60
MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS
Sbjct: 1 MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS 60
Query: 61 ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV 120
ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV
Sbjct: 61 ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV 120
Query: 121 GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG 180
GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG
Sbjct: 121 GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG 180
Query: 181 QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF 240
QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF
Sbjct: 181 QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF 240
Query: 241 YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL 300
YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL
Sbjct: 241 YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL 300
Query: 301 CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI 360
CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI
Sbjct: 301 CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI 360
Query: 361 CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL 420
CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL
Sbjct: 361 CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL 420
Query: 421 MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL 480
MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL
Sbjct: 421 MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL 480
Query: 481 DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP 540
DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP
Sbjct: 481 DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP 540
Query: 541 PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD 600
PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD
Sbjct: 541 PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD 600
Query: 601 RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA 660
RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA
Sbjct: 601 RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA 660
Query: 661 PGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQE 720
PGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQE
Sbjct: 661 PGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQE 720
Query: 721 KLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLP 780
KLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLP
Sbjct: 721 KLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLP 780
Query: 781 LDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDA 840
LDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDA
Sbjct: 781 LDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDA 840
Query: 841 APRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVA 900
APRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVA
Sbjct: 841 APRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVA 900
Query: 901 ATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPE 960
ATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPE
Sbjct: 901 ATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPE 960
Query: 961 LRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPEL 1020
LRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPEL
Sbjct: 961 LRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPEL 1020
Query: 1021 GLKRAVPGGQRPDNAKPNRDLKLQAGSDLRRRRRDLGPHAEGQLAPRDGVIIGLNPLPDV 1080
GLKRAVPGGQRPDNAKPNRDLKLQAGSDLRRRRRDLGPHAEGQLAPRDGVIIGLNPLPDV
Sbjct: 1021 GLKRAVPGGQRPDNAKPNRDLKLQAGSDLRRRRRDLGPHAEGQLAPRDGVIIGLNPLPDV 1080
Query: 1081 QVNDLRGALDAQLRQAAGGALQVVHSRQLRQAPGPPEES 1119
QVNDLRGALDAQLRQAAGGALQVVHSRQLRQAPGPPEES
Sbjct: 1081 QVNDLRGALDAQLRQAAGGALQVVHSRQLRQAPGPPEES 1119
>gi|20070376 solute carrier family 38, member 10 isoform b [Homo
sapiens]
Length = 780
Score = 1379 bits (3568), Expect = 0.0
Identities = 691/696 (99%), Positives = 692/696 (99%), Gaps = 2/696 (0%)
Query: 1 MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS 60
MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS
Sbjct: 1 MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKS 60
Query: 61 ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV 120
ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV
Sbjct: 61 ASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQV 120
Query: 121 GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG 180
GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG
Sbjct: 121 GGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSG 180
Query: 181 QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF 240
QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF
Sbjct: 181 QWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTF 240
Query: 241 YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL 300
YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL
Sbjct: 241 YVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLL 300
Query: 301 CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI 360
CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI
Sbjct: 301 CEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFI 360
Query: 361 CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL 420
CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL
Sbjct: 361 CPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL 420
Query: 421 MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL 480
MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL
Sbjct: 421 MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQL 480
Query: 481 DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP 540
DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP
Sbjct: 481 DRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP 540
Query: 541 PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD 600
PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD
Sbjct: 541 PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGD 600
Query: 601 RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA 660
RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA
Sbjct: 601 RGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPA 660
Query: 661 PGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEML 696
PGPGLPPEPREQRDVERAGGNQAASQLE G+A L
Sbjct: 661 PGPGLPPEPREQRDVERAGGNQAASQLE--GKASAL 694
Score = 45.4 bits (106), Expect = 3e-04
Identities = 74/274 (27%), Positives = 102/274 (37%), Gaps = 33/274 (12%)
Query: 752 QEPGAAVPR-GQEAPE-GKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGP 809
Q+P AV G+E P+ K RE +E V G+ AP + R + P
Sbjct: 431 QDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVP 490
Query: 810 VGR----DPAGPPDGG--PDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDP 863
VG +P P D + + R + + + A +A G +G P+PD
Sbjct: 491 VGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGV-----QGQMAPPLPDS 545
Query: 864 AREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGAETGD 923
RE PE+ + PGQ+Q + + P K A G ++ A + GPG
Sbjct: 546 EREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDL-GPGDRGLH 604
Query: 924 PRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDHGGH- 982
PR + + GLA GG E A P P D GQ DHGG
Sbjct: 605 PRPQAVLSEQQNGLAV---GGGEKAKGGP------PPGNAAGD---TGQPAEDSDHGGKP 652
Query: 983 -LEMRKARGGDHVPVSHEQPR-----GGEDAAVQ 1010
L K G +P + R GG AA Q
Sbjct: 653 PLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQ 686
>gi|21361602 solute carrier family 38, member 2 [Homo sapiens]
Length = 506
Score = 126 bits (316), Expect = 1e-28
Identities = 111/447 (24%), Positives = 194/447 (43%), Gaps = 65/447 (14%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N+ N+IVG +L + + GI L +LL F S + S L+K+A+ Y
Sbjct: 77 VFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQ 136
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIG-------DLGSNFFARLFGFQVGGTF 124
L + A+G GK+ S+ +G ++ ++ +N + + + G +
Sbjct: 137 LGYKAFGLVGKLAASGSITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNY 196
Query: 125 RMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIV--------------- 169
L+ VSL ++LPLSL RN+ + S ++LL F+ V++
Sbjct: 197 ---LVLLVSLVVILPLSLFRNL-GYLGYTSGLSLLCMVFFLIVVICKKFQVPCPVEAALI 252
Query: 170 ---------------LSSLKHGLFSGQWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPT 214
+ +L H + R ++ +PI SF C VLP
Sbjct: 253 INETINTTLTQPTALVPALSHNVTENDSCRPHYFIFNSQTVYAVPILIFSFVCHPAVLPI 312
Query: 215 YDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNLVTEML- 273
Y+ L + S + M ++ S + Y++ FGY++F E +L + S L T++L
Sbjct: 313 YEELKDRSRRRMMNVSKISFFAMFLMYLLAALFGYLTFYEHVESELLHTYSSILGTDILL 372
Query: 274 ---RVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVF 330
R+ +M+V + P++I P R +++ LLC KD ++ R +T+S++
Sbjct: 373 LIVRLAVLMAVTLTVPVVIFPIRSSVTHLLC--ASKDFSW--------WRHSLITVSILA 422
Query: 331 GTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQV-----VLWVGLG 385
T + I +P + I G GA+ S++ FI P+ Y K+ K V + ++ G
Sbjct: 423 FTNLLVIFVPTIRDIFGFIGASAASMLIFILPSAFYIKLVKKEPMKSVQKIGALFFLLSG 482
Query: 386 VLVVSTVTTLSVSEEVPEDLAEEAPGG 412
VLV++ L V D APGG
Sbjct: 483 VLVMTGSMALIVL-----DWVHNAPGG 504
>gi|5870893 solute carrier family 38, member 3 [Homo sapiens]
Length = 504
Score = 106 bits (265), Expect = 1e-22
Identities = 96/399 (24%), Positives = 170/399 (42%), Gaps = 56/399 (14%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N+ N+I+G +L + + GI+L LL + ++ S L+KS+ + R Y
Sbjct: 72 VFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGVVGIRAYEQ 131
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAF-YVVIGDLGS------NFFARLFGFQVGGTF 124
L + A+G GK+ ++ +G ++ Y++ +L N + + + G +
Sbjct: 132 LGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEKTSDWYMNGNY 191
Query: 125 RMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKH--------- 175
L+ VS+ I+LPL+L R + +S+ L VF + V+ H
Sbjct: 192 ---LVILVSVTIILPLALMRQL--GYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLPPNF 246
Query: 176 ----GLFSGQWLRRVSY---VRWEGVFRC--------------IPIFGMSFACQSQVLPT 214
G FS + + V E C IPI +F C +VLP
Sbjct: 247 NNTTGNFSHVEIVKEKVQLQVEPEASAFCTPSYFTLNSQTAYTIPIMAFAFVCHPEVLPI 306
Query: 215 YDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHF----PSNLVT 270
Y L +PS K M I S+ V+ Y + FGY++F +L + P +++
Sbjct: 307 YTELKDPSKKKMQHISNLSIAVMYIMYFLAALFGYLTFYNGVESELLHTYSKVDPFDVLI 366
Query: 271 EMLRVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVF 330
+RV + +V + P+++ P R+A+ +L Q+ LR + + ++
Sbjct: 367 LCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQE----------FSWLRHVLIAVGLLT 416
Query: 331 GTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKI 369
+ I PN+ I G+ GAT + FI PA+ Y +I
Sbjct: 417 CINLLVIFAPNILGIFGVIGATSAPFLIFIFPAIFYFRI 455
>gi|8922692 solute carrier family 38, member 7 [Homo sapiens]
Length = 462
Score = 105 bits (263), Expect = 2e-22
Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 19/397 (4%)
Query: 7 SNWGLITNIVNSIVGVSVLTMPFCFKQCG-IVLGALLLVFCSWMTHQSCMFLVKSASLSK 65
S G I +VN+ +G +L P F G + G L + + L + S
Sbjct: 52 STLGAIFIVVNACLGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASN 111
Query: 66 RRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVGG--- 122
RTY + + GK +L E ++ GTCIAF ++IGD A + G
Sbjct: 112 ERTYQEVVWAVCGKLTGVLCEVAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPEGASGP 171
Query: 123 --TFRMFLLFAVSLCIVLPLSLQRNM-MASIQSFSAMALLFYTVFMFVIVLSSLKHGLFS 179
T R F + + +LPLS+ R + SF ++ +Y + +I +
Sbjct: 172 WYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVGTWYVTAIVIIKYIWPDKEMTP 231
Query: 180 GQWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTT 239
G L R + W VF +P F C +P ++S+ +P VKT + +++ +
Sbjct: 232 GNILTRPA--SWMAVFNAMPTICFGFQCHVSSVPVFNSMQQPEVKTWGGVVTAAMVIALA 289
Query: 240 FYVMVGFFGYVSFTEATAGNVLMHFPS-NLVTEMLRVGFMMSVAVGFPMMILPCRQALST 298
Y+ G G+++F A +VL+ +PS ++ + R ++SV +P++ R +
Sbjct: 290 VYMGTGICGFLTFGAAVDPDVLLSYPSEDMAVAVARAFIILSVLTSYPILHFCGRAVVEG 349
Query: 299 LLCEQQQKDGTFAAGGYMPPLRFKAL-TLSVVFGTMVGGILIPNVETILGLTGATMGSLI 357
L Q G R + L TL T++ + IP++ ++ + G + +
Sbjct: 350 LWLRYQ---GVPVEEDVGRERRRRVLQTLVWFLLTLLLALFIPDIGKVISVIGG-LAACF 405
Query: 358 CFICP--ALIYKKIHKNALSSQVVLW--VGLGVLVVS 390
F+ P LI K+ + W V GVL+V+
Sbjct: 406 IFVFPGLCLIQAKLSEMEEVKPASWWVLVSYGVLLVT 442
>gi|193788624 solute carrier family 38, member 5 [Homo sapiens]
Length = 472
Score = 102 bits (254), Expect = 2e-21
Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 35/382 (9%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N+ N+I+G +L + + G++ LL+ + ++ S L+ A ++ R Y
Sbjct: 54 VFNLSNAIMGSGILGLAYAMAHTGVIFFLALLLCIALLSSYSIHLLLTCAGIAGIRAYEQ 113
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAF-YVVIGDLGSNFFARLFGFQVGGTFRM--FL 128
L A+G AGK++V T + +G ++ +++ +L L+ G F L
Sbjct: 114 LGQRAFGPAGKVVVATVICLHNVGAMSSYLFIIKSELPLVIGTFLYMDPEGDWFLKGNLL 173
Query: 129 LFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQWLRRVSY 188
+ VS+ I+LPL+L ++ + + S ++L F+ ++ + G G +
Sbjct: 174 IIIVSVLIILPLALMKH-LGYLGYTSGLSLTCMLFFLVSVIYKKFQLGCAIGHNETAMES 232
Query: 189 VRWEG--------------------VFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSS 228
G + +PI +F C +VLP Y L PS + M +
Sbjct: 233 EALVGLPSQGLNSSCEAQMFTVDSQMSYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQA 292
Query: 229 IFASSLNVVTTFYVMVGFFGYVSFTEATAGNVL-MHFPSNLVTEMLRVGFMMSVAVGFPM 287
+ S+ + Y + FGY++F + +L M+ + + +R+ +++V + P+
Sbjct: 293 VANVSIGAMFCMYGLTATFGYLTFYSSVKAEMLHMYSQKDPLILCVRLAVLLAVTLTVPV 352
Query: 288 MILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILG 347
++ P R+AL LL F + P R A+ L ++ V I +P + I G
Sbjct: 353 VLFPIRRALQQLL---------FPGKAFSWP-RHVAIALILLVLVNVLVICVPTIRDIFG 402
Query: 348 LTGATMGSLICFICPALIYKKI 369
+ G+T + FI P++ Y +I
Sbjct: 403 VIGSTSAPSLIFILPSIFYLRI 424
>gi|24429574 solute carrier family 38, member 6 [Homo sapiens]
Length = 456
Score = 94.4 bits (233), Expect = 6e-19
Identities = 81/402 (20%), Positives = 177/402 (44%), Gaps = 42/402 (10%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N++N+I+G +L + + G+ + LL+ + + S L+ + +Y
Sbjct: 51 VFNLMNAIMGSGILGLAYVMANTGVFGFSFLLLTVALLASYSVHLLLSMCIQTAVTSYED 110
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVGGTFRMF---- 127
L A+G GK++V ++I +G ++ ++I + A + F G R +
Sbjct: 111 LGLFAFGLPGKLVVAGTIIIQNIGAMSSYLLIIK---TELPAAIAEFLTGDYSRYWYLDG 167
Query: 128 --LLFAVSLCIVLPLSL--QRNMMASIQSFSAMALLFYTVFMFV--------IVLSSLKH 175
LL + + IV PL+L + + S S ++F+ + + + + L+ ++
Sbjct: 168 QTLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMMFFALVVIIKKWSIPCPLTLNYVEK 227
Query: 176 GL----FSGQWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFA 231
G + ++ + E + +P SF C + +LP Y L PS K M ++
Sbjct: 228 GFQISNVTDDCKPKLFHFSKESAY-ALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTN 286
Query: 232 SSLNVVTTFYVMVGFFGYVSFTEATAGNVL----MHFPSNLVTEMLRVGFMMSVAVGFPM 287
+++ + Y + FGY++F + +L + ++V +++ + +V + P+
Sbjct: 287 TAIALSFLIYFISALFGYLTFYDKVESELLKGYSKYLSHDVVVMTVKLCILFAVLLTVPL 346
Query: 288 MILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILG 347
+ P R+A++ + F + +R +TL++ ++ I +P++ + G
Sbjct: 347 IHFPARKAVTMM----------FFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFG 396
Query: 348 LTGATMGSLICFICPALIYKKIHKNALSSQVVLWVGLGVLVV 389
+ GA+ + + FI P L Y K+ + S W LG V+
Sbjct: 397 VVGASTSTCLIFIFPGLFYLKLSREDFLS----WKKLGAFVL 434
>gi|117168277 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 88.2 bits (217), Expect = 4e-17
Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 38/401 (9%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N+ N+I+G +L + F GI+L +LL + ++ S L+ + + Y
Sbjct: 77 VFNLSNAIMGSGILGLAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEK 136
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFG----FQVGGTFRMF 127
L +G GK ++ + G +++ ++ + + L G F
Sbjct: 137 LGEQVFGTTGKFVIFGATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRV 196
Query: 128 LLFAVSLCIVLPLSLQRNM--MASIQSFSAMALLFYTV------FMFVIVLSSLKHGLFS 179
L+ V+ I+LPL L +N+ + FS ++F+ + F ++ L + +
Sbjct: 197 LVVIVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISA 256
Query: 180 GQWLRRV---SYVRWEG-VFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLN 235
YV + +P +F C VLP Y L + S K M + S
Sbjct: 257 NSTNADTCTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFF 316
Query: 236 VVTTFYVMVGFFGYVSFTEATAGNVLMHFPS--NLVTEMLRVGFMMSVAVGFPMMILPCR 293
+ Y + FGY++F + ++L + S +++ +R+ +++V + P++ R
Sbjct: 317 AMFVMYFLTAIFGYLTFYDNVQSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVR 376
Query: 294 QALSTLLCEQQQKDGTFAAGGYMPPLRFKALT--LSVVFGTMVGGILIPNVETILGLTGA 351
+L L A R +T L VV +V I IP+++ I G+ G
Sbjct: 377 SSLFEL-----------AKKTKFNLCRHTVVTCILLVVINLLV--IFIPSMKDIFGVVGV 423
Query: 352 TMGSLICFICPALIYKKI-----HKNALSSQVVLWVGLGVL 387
T +++ FI P+ +Y KI K L++GLGVL
Sbjct: 424 TSANMLIFILPSSLYLKITDQDGDKGTQRIWAALFLGLGVL 464
>gi|117168275 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 88.2 bits (217), Expect = 4e-17
Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 38/401 (9%)
Query: 12 ITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAG 71
+ N+ N+I+G +L + F GI+L +LL + ++ S L+ + + Y
Sbjct: 77 VFNLSNAIMGSGILGLAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEK 136
Query: 72 LAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFG----FQVGGTFRMF 127
L +G GK ++ + G +++ ++ + + L G F
Sbjct: 137 LGEQVFGTTGKFVIFGATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRV 196
Query: 128 LLFAVSLCIVLPLSLQRNM--MASIQSFSAMALLFYTV------FMFVIVLSSLKHGLFS 179
L+ V+ I+LPL L +N+ + FS ++F+ + F ++ L + +
Sbjct: 197 LVVIVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISA 256
Query: 180 GQWLRRV---SYVRWEG-VFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLN 235
YV + +P +F C VLP Y L + S K M + S
Sbjct: 257 NSTNADTCTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFF 316
Query: 236 VVTTFYVMVGFFGYVSFTEATAGNVLMHFPS--NLVTEMLRVGFMMSVAVGFPMMILPCR 293
+ Y + FGY++F + ++L + S +++ +R+ +++V + P++ R
Sbjct: 317 AMFVMYFLTAIFGYLTFYDNVQSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVR 376
Query: 294 QALSTLLCEQQQKDGTFAAGGYMPPLRFKALT--LSVVFGTMVGGILIPNVETILGLTGA 351
+L L A R +T L VV +V I IP+++ I G+ G
Sbjct: 377 SSLFEL-----------AKKTKFNLCRHTVVTCILLVVINLLV--IFIPSMKDIFGVVGV 423
Query: 352 TMGSLICFICPALIYKKI-----HKNALSSQVVLWVGLGVL 387
T +++ FI P+ +Y KI K L++GLGVL
Sbjct: 424 TSANMLIFILPSSLYLKITDQDGDKGTQRIWAALFLGLGVL 464
>gi|122937281 solute carrier family 38, member 8 [Homo sapiens]
Length = 435
Score = 87.0 bits (214), Expect = 9e-17
Identities = 87/380 (22%), Positives = 169/380 (44%), Gaps = 29/380 (7%)
Query: 3 AAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVK-SA 61
AA S+ G + ++ S +G +L P+ F + G V+ A L+ S + S + ++ +A
Sbjct: 21 AATLSSMGAVFILMKSALGAGLLNFPWAFSKAGGVVPAFLVELVSLVFLISGLVILGYAA 80
Query: 62 SLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVG 121
++S + TY G+ G A L E + +L +AF VIGD +L +
Sbjct: 81 AVSGQATYQGVVRGLCGPAIGKLCEACFLLNLLMISVAFLRVIGDQ----LEKLCDSLLS 136
Query: 122 GT---------FRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSS 172
GT + F L +S+ ++LPLS R + + Q ++++ ++ +++ +
Sbjct: 137 GTPPAPQPWYADQRFTLPLLSVLVILPLSAPREI--AFQKYTSILGTLAACYLALVI--T 192
Query: 173 LKHGLFSGQWLRR----VSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSS 228
+++ L+ +R +S W VF P F C + Y S+ + S+ +
Sbjct: 193 VQYYLWPQGLVRESHPSLSPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRKRSLSHWAL 252
Query: 229 IFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSN-LVTEMLRVGFMMSVAVGFPM 287
+ SL Y + G +G+++F + +VLM +P N +V + RV F +S+ +P+
Sbjct: 253 VSVLSLLACCLIYSLTGVYGFLTFGTEVSADVLMSYPGNDMVIIVARVLFAVSIVTVYPI 312
Query: 288 MILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRF---KALTLSVVFGTMVGGILIPNVET 344
++ R + ++ G + P LT+ V T+ + +P++
Sbjct: 313 VLFLGRSVMQDFW--RRSCLGGWGPSALADPSGLWVRMPLTILWVTVTLAMALFMPDLSE 370
Query: 345 ILGLTGATMGSLICFICPAL 364
I+ + G + S FI P L
Sbjct: 371 IVSIIGG-ISSFFIFIFPGL 389
>gi|27735137 solute carrier family 38, member 11 [Homo sapiens]
Length = 384
Score = 86.3 bits (212), Expect = 2e-16
Identities = 85/377 (22%), Positives = 161/377 (42%), Gaps = 42/377 (11%)
Query: 32 KQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIG 91
KQ G LG LLL + S++T S + L+K +LS TY L +G G +L+
Sbjct: 2 KQAGFPLGILLLFWVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQF- 60
Query: 92 LMLGTCIAFYVVIGDLGSNFFARLFGFQVGGTFRMFLLFAVSLCIVLPLSLQRNMMASIQ 151
Y I D + F R F++ ++ LPLSL RN +A +
Sbjct: 61 --------LYPFIVDPENVFIG-----------RHFIIGLSTVTFTLPLSLYRN-IAKLG 100
Query: 152 SFSAMALLFYTVFMFVIVLSSLKHGLFSGQWLRRVSYVRWEGVFRCIPIFGMSFACQSQV 211
S ++ T+ + +++ ++ G + + + + + + +F C
Sbjct: 101 KVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAK-PNAIQAVGVMSFAFICHHNS 159
Query: 212 LPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSN--LV 269
Y SL+EP+V S + S+ + + GY++FT T G++ ++ N LV
Sbjct: 160 FLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLV 219
Query: 270 TEMLRVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVV 329
T R + ++V + +PM R+ ++ + GG + + +T+ V+
Sbjct: 220 T-FGRFCYGVTVILTYPMECFVTREVIANVF-----------FGGNLSSVFHIVVTVMVI 267
Query: 330 FGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKI------HKNALSSQVVLWVG 383
+ +LI + +L L G + + FI P+ Y K+ H + + S V+L +G
Sbjct: 268 TVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIG 327
Query: 384 LGVLVVSTVTTLSVSEE 400
V+V V ++ +++
Sbjct: 328 AVVMVFGFVMAITNTQD 344
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 77.0 bits (188), Expect = 9e-14
Identities = 124/562 (22%), Positives = 207/562 (36%), Gaps = 70/562 (12%)
Query: 389 VSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGLMKVEAARLS--AQDPVVAVAEDGREKPK 446
V+ T +E E+ +E GG EAEG + + + A P +E+ K
Sbjct: 466 VTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAK 525
Query: 447 LPKEREELEQAQIKGPVDV--------PGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHE 498
P E + E+ + K P +V P +E+ K PE ++ V + +
Sbjct: 526 SPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAK 585
Query: 499 PPVPHDKVVVDEGQDRE-----VPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPE 553
P + E + E V EE K P A K+P V+ + P EK +
Sbjct: 586 SPAKEEAKSPAEAKSPEKAKSPVKEEAKSP---AEAKSP-VKEEAKSPAEVKSPEKAKSP 641
Query: 554 QGEVGKRPGQAQALE-EAGDLPE---DPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQA 609
E K P +A++ E E PE P K + A P K + ++ P +
Sbjct: 642 TKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEE 701
Query: 610 VLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEP 669
S ++ V E+AK P A + A+ + K P+ E +P PE
Sbjct: 702 AKSPEKAKSPV--KEEAKS---PEKAKSPVKEEAKTPEK-AKSPVKEEAKSPEKAKSPEK 755
Query: 670 REQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQ 729
+ DV+ A + E A+ V +E + +K +E A +E
Sbjct: 756 AKTLDVKSPEAKTPAKE-EARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEI 814
Query: 730 HKEIHQQRQEDEEDKPRQVEVHQEP-------GAAVPRGQEAPEGKARETVENLPPLP-- 780
K+ + EE+KP++V+V + P A P+ +E + K E + P P
Sbjct: 815 PKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKV 874
Query: 781 ---LDPVLRAP-----GGRPAPSQDLNQRSLEHSEGPVG---RDPAGPPDGGPDTEPRAA 829
+P + P + ++D + E P ++ A P + +
Sbjct: 875 EEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPD 934
Query: 830 QAKLRD-----GQKDAAPRAAGTVKELPKGPEQVPVPDP---------AREAGGPEERLA 875
AK ++ +K+AAP T +E K PE+ P + ++E P+ A
Sbjct: 935 DAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKA 994
Query: 876 EEFPGQSQDVTGGSQDRKKPGK 897
E+ Q +D K P K
Sbjct: 995 EKSSSTDQ------KDSKPPEK 1010
Score = 48.9 bits (115), Expect = 3e-05
Identities = 41/212 (19%), Positives = 91/212 (42%), Gaps = 19/212 (8%)
Query: 705 IKEQQVQQKRLLDQQEKLLAVIEEQHKE--IHQQRQEDEEDKPRQVEVHQEPGAAVPRGQ 762
IK + ++ +++++ EK ++EEQ +E + ++ E+EE + ++ E +E G +
Sbjct: 436 IKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE 495
Query: 763 ------EAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQD-----LNQRSLEHSEGPVG 811
++P + + E P+ ++P +P ++ +S E ++ P
Sbjct: 496 GGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAK 555
Query: 812 RDPAGPPDG-GPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPAREAGGP 870
+ PP+ P+ E + A+++ +K +P KE K P + P+ A+
Sbjct: 556 EEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSP-----AKEEAKSPAEAKSPEKAKSPVKE 610
Query: 871 EERLAEEFPGQSQDVTGGSQDRKKPGKEVAAT 902
E + E ++ + K P K + T
Sbjct: 611 EAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPT 642
>gi|219689132 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 71.6 bits (174), Expect = 4e-12
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 198 IPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATA 257
IPI +F C +VLP Y L + S + M ++ S+ + Y++ FGY++F
Sbjct: 336 IPILVFAFVCHPEVLPIYSELKDRSRRKMQTVSNISITGMLVMYLLAALFGYLTF-YGEV 394
Query: 258 GNVLMHFPSNLVT-----EMLRVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAA 312
+ L+H S + T M+R+ +++V + P+++ P R ++ TLL ++
Sbjct: 395 EDELLHAYSKVYTLDIPLLMVRLAVLVAVTLTVPIVLFPIRTSVITLLFPKRP------- 447
Query: 313 GGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHK 371
+R + ++ V IL+P ++ I G GA+ +++ FI PA+ Y K+ K
Sbjct: 448 ---FSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIGASSATMLIFILPAVFYLKLVK 503
Score = 46.2 bits (108), Expect = 2e-04
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 14 NIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLA 73
N+ N+I+G +L + + GI+L ++L+ + ++ S L+K+A Y L
Sbjct: 83 NLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKEGGSLIYEKLG 142
Query: 74 FHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVG-GTFRM---FLL 129
A+G GK+ S+ +G ++ +I G + G + + +L+
Sbjct: 143 EKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTGEWYLNGNYLI 202
Query: 130 FAVSLCIVLPLSLQRNM--MASIQSFSAMALLFY 161
VS+ I+LPLSL +N+ + FS ++F+
Sbjct: 203 IFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFF 236
>gi|18482385 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 71.6 bits (174), Expect = 4e-12
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 198 IPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATA 257
IPI +F C +VLP Y L + S + M ++ S+ + Y++ FGY++F
Sbjct: 336 IPILVFAFVCHPEVLPIYSELKDRSRRKMQTVSNISITGMLVMYLLAALFGYLTF-YGEV 394
Query: 258 GNVLMHFPSNLVT-----EMLRVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAA 312
+ L+H S + T M+R+ +++V + P+++ P R ++ TLL ++
Sbjct: 395 EDELLHAYSKVYTLDIPLLMVRLAVLVAVTLTVPIVLFPIRTSVITLLFPKRP------- 447
Query: 313 GGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKIHK 371
+R + ++ V IL+P ++ I G GA+ +++ FI PA+ Y K+ K
Sbjct: 448 ---FSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIGASSATMLIFILPAVFYLKLVK 503
Score = 46.2 bits (108), Expect = 2e-04
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 14 NIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLA 73
N+ N+I+G +L + + GI+L ++L+ + ++ S L+K+A Y L
Sbjct: 83 NLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKEGGSLIYEKLG 142
Query: 74 FHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVG-GTFRM---FLL 129
A+G GK+ S+ +G ++ +I G + G + + +L+
Sbjct: 143 EKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTGEWYLNGNYLI 202
Query: 130 FAVSLCIVLPLSLQRNM--MASIQSFSAMALLFY 161
VS+ I+LPLSL +N+ + FS ++F+
Sbjct: 203 IFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFF 236
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 63.5 bits (153), Expect = 1e-09
Identities = 84/337 (24%), Positives = 124/337 (36%), Gaps = 55/337 (16%)
Query: 387 LVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAEDGREKPK 446
L V T + E PE EAP EAEG M+ A++ ++ +PK
Sbjct: 1980 LEVEVETQEAEGEAQPESEDVEAP-----EAEGEMQ------EAEEEAQPESDGVEAQPK 2028
Query: 447 LP-KEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQG-IAVPVGEAHRHEPPVPHD 504
+E +E+E K D DG EAPE + + +G + GEAH V
Sbjct: 2029 SEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQ 2088
Query: 505 KVVVD---EGQDREVPEENKPPSRHAGGKAPGVQGQMAPP-----LPDSEREKQEPEQG- 555
+ + E + E PE + G +AP +G+ P P++E E Q +G
Sbjct: 2089 EAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGV 2148
Query: 556 EVGKRPGQAQALEE---AGDLPEDPQ------KVPEADGQPAVQPAKEDL-GPGDRG--- 602
E G+AQ E A + E+ Q + PEA+G+ QP E + P G
Sbjct: 2149 EAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGE--AQPESEGIEAPEAEGEAQ 2206
Query: 603 --------------LHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDH 648
P P+ V + + G A E G G+ G +
Sbjct: 2207 PELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEAS 2266
Query: 649 GGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAAS 685
P+P ++P P PP P +R G S
Sbjct: 2267 ESSSPVPEDRPTP----PPSPGGDTPHQRPGSQTGPS 2299
Score = 63.2 bits (152), Expect = 1e-09
Identities = 162/791 (20%), Positives = 272/791 (34%), Gaps = 133/791 (16%)
Query: 287 MMILPCRQALS-TLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETI 345
M++ P R+AL+ LL + QQ+ + + L L + T+ P + T
Sbjct: 1586 MVLEPPREALTGELLLQTQQRRHRLRGLRNLSAFSERTLGLGPLSFTLEDE---PALSTA 1642
Query: 346 LG--LTGATMGSLICFICPALIYKKIHKNALSSQVVLWVGLGVLV----VSTVTTLSVSE 399
LG L G C C A + KK+ + +S + + G + + + E
Sbjct: 1643 LGSQLGEEAEGEEFC-PCEACVRKKV--SPMSPKATMGATRGPIKEAFDLQQILQRKRGE 1699
Query: 400 EVPEDLAEEAPGGRLGEAEGLMKVEAARLS-----AQDPVVAVAEDGREKPKLPKEREEL 454
+ AE APG + V+ A +Q P V EDG +L ++++
Sbjct: 1700 HTDGEAAEVAPGKTHTDPTSTRTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPK 1759
Query: 455 EQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDR 514
G +G +E + G+ H E + + + Q+
Sbjct: 1760 L-----------GEAEGDAMAQERE------------GKTHNSETSAGSE--LGEAEQEG 1794
Query: 515 EVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLP 574
E E G +QG+ A + E E + G+AQ E + P
Sbjct: 1795 EGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAP 1854
Query: 575 EDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGN 634
E EA+G+ QP ED+ +A+G P +
Sbjct: 1855 EAEGDAQEAEGE--AQPESEDV-------------------------EAPEAEGEAQPES 1887
Query: 635 AAGDTGQ---PAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAG 691
+T + + G + P AEK A PE +E G ++ S+ EA
Sbjct: 1888 EDVETPEAEWEVQPESEGAEAP-EAEKEA-----QPETESVEALETEGEDEPESEGAEAQ 1941
Query: 692 RAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVH 751
AE Q + Q + +++ QE +E Q ED E +VE
Sbjct: 1942 EAE-----EAAQEAEGQTQPESEVIESQEA---------EEEAQPESEDVEALEVEVETQ 1987
Query: 752 QEPGAAVPRGQ--EAP--EGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSE 807
+ G A P + EAP EG+ +E E P D V P +Q++ + + +E
Sbjct: 1988 EAEGEAQPESEDVEAPEAEGEMQEAEEEAQP-ESDGVEAQPKSEGEEAQEV-EGETQKTE 2045
Query: 808 GPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQ-----VPVPD 862
G + G + E + A+ ++++ + +A P + + +G Q V P+
Sbjct: 2046 GDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPE 2105
Query: 863 PAREAGGPEERLAEEFPGQSQDVTGGSQ--------DRKKPGKEVAATGTSILKEANWLV 914
EA E A E G++Q + G + + G E E+ +
Sbjct: 2106 AEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIE 2165
Query: 915 AGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVIS--DGEQGGQ 972
A E P ++ + G A G E A+ +A QPEL + + E+ Q
Sbjct: 2166 AQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEA---QPELEGVEAPEAEEEAQ 2222
Query: 973 -----------QGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPELG 1021
+G + +G V + Q +++ P RP P
Sbjct: 2223 PEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPP-- 2280
Query: 1022 LKRAVPGGQRP 1032
PGG P
Sbjct: 2281 ---PSPGGDTP 2288
Score = 37.4 bits (85), Expect = 0.080
Identities = 98/461 (21%), Positives = 140/461 (30%), Gaps = 136/461 (29%)
Query: 483 PGQGIAVPVGEA-HRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAG---GKAPGVQGQM 538
PG G P G H H H + D ++VP +PP R G P G
Sbjct: 654 PGLGRVAPRGHPRHSHYRKDTHSPL--DSSVTKQVP---RPPERRRACQDGSVPRYSGSS 708
Query: 539 APPLPDSEREKQEPEQGEV-----------------------GKRPGQAQALEEAGDLPE 575
+ + + P G + G P A + AGD
Sbjct: 709 SSTRTQASGNLRPPSSGSLPSQDLLGTSSATVTPAVHSDFVSGVSPHNAPSAGWAGDAGS 768
Query: 576 ---DPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPP 632
P +P + LG R P+P + L L VG E+ GP
Sbjct: 769 RTCSPAPIPPHTSDSCSKSGAASLGEEARDT-PQPSSPLV-----LQVGRPEQGAVGPHR 822
Query: 633 GNAAGDTG-QPAEDSDHGGKPPL-----------PAEKPAP------------------- 661
+ G QPA+++ G P P +P P
Sbjct: 823 SHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTAR 882
Query: 662 GPGLPPEP--REQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQ 719
GPG P+ R+ G N AS+ A Q R L ++
Sbjct: 883 GPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS-----------------QGAGSRGLSEE 925
Query: 720 EKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPL 779
+ L + Q +E E +++PR +PE RE ++N+P
Sbjct: 926 KTLRSGGGPQGQE----------------EASGVSPSSLPRS--SPEAVVREWLDNIPEE 967
Query: 780 PL--------DPVLRAPGGRPAPSQDLN------------QRSLEHSEGPVGRDP----- 814
P+ + A GG P D Q + EG G+DP
Sbjct: 968 PILMTYELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGA 1027
Query: 815 -AGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKG 854
G D GP + Q +G + AP AG +E P G
Sbjct: 1028 LLGSSDTGPQSGEGVPQGAAPEGVSE-APAEAGADREAPAG 1067
>gi|17999520 solute carrier family 32, member 1 [Homo sapiens]
Length = 525
Score = 63.2 bits (152), Expect = 1e-09
Identities = 89/442 (20%), Positives = 185/442 (41%), Gaps = 53/442 (11%)
Query: 9 WGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVK--------S 60
W N+ N+I G+ VL +P+ G LG L++F + + + L+
Sbjct: 119 WEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILIACLYEENEDG 177
Query: 61 ASLSKRRTYAGLAFHA----YGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLF 116
+ R +Y +A + G +V + I ++ TCI + VV G+L N F L
Sbjct: 178 EVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLP 237
Query: 117 GFQVGGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHG 176
Q + ++ ++LP + +N+ A + FS + L + V +++ L
Sbjct: 238 VSQKSWSI-------IATAVLLPCAFLKNLKA-VSKFSLLCTLAHFVINILVIAYCLSRA 289
Query: 177 LFSGQWLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPS-VKTMSSIFASSLN 235
W + Y+ + I I S+ Q + ++ +PS M + +
Sbjct: 290 R-DWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAAC 348
Query: 236 VVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQA 295
V+ + +V Y+++ + T + + P + + ++ + + + +P+ +
Sbjct: 349 VLKGLFALVA---YLTWADETKEVITDNLPGS-IRAVVNIFLVAKALLSYPLPFFAAVEV 404
Query: 296 LSTLLCEQQQKDGTFAAGGYMPPLRFKA----LTLSVVFGTMVGGILIPNVETILGLTGA 351
L L ++ + F Y R K+ L ++V T++ I +P+ ++GLTG+
Sbjct: 405 LEKSLFQEGSR--AFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGS 462
Query: 352 TMGSLICFICPALIY-KKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAP 410
G+ +CF+ P+L + + + + L QV + + + V+ + ++S
Sbjct: 463 LTGAGLCFLLPSLFHLRLLWRKLLWHQV--FFDVAIFVIGGICSVS-------------- 506
Query: 411 GGRLGEAEGLMKVEAARLSAQD 432
G + EGL +EA R +A+D
Sbjct: 507 -GFVHSLEGL--IEAYRTNAED 525
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 62.8 bits (151), Expect = 2e-09
Identities = 132/545 (24%), Positives = 191/545 (35%), Gaps = 98/545 (17%)
Query: 400 EVPEDLAEEAPGGRLG-----EAEGLMK-----------VEAARLSAQDPVVAVAEDGRE 443
E ++LA+E+P G G EAE ++ VE L+A + V E E
Sbjct: 956 EKDQELAQESPPGMAGVENEDEAELNLREQDGFTGKEEVVEQGELNATEEVWIPGEGHPE 1015
Query: 444 KPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPH 503
P+ ++R +E A +KG +G + PE G+ P G EP V
Sbjct: 1016 SPEPKEQRGLVEGASVKGGA------EGLQDPEGQSQQVGAPGLQAPQGLPEAIEPLVED 1069
Query: 504 DKVVVDEGQDREVPE----ENKPPSRHAGGKAPGV---QGQMAPPLPDSEREKQEP---E 553
D V G D+ PE A G PG G + P + E EP E
Sbjct: 1070 D---VAPGGDQASPEVMLGSEPAMGESAAGAEPGPGQGVGGLGDPGHLTREEVMEPPLEE 1126
Query: 554 QGEVGKR----PGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQA 609
+ KR G + LEEAG L + ++P P +P +E
Sbjct: 1127 ESLEAKRVQGLEGPRKDLEEAGGLGTEFSELPGKSRDP-WEPPREG-------------- 1171
Query: 610 VLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQP----AEDSDHGGKPPLPAEKPAPGPGL 665
E+ A G E+A G+ D P +E+++ P L + P P L
Sbjct: 1172 --REESEAEAPRGAEEAFPAETLGHTGSDAPSPWPLGSEEAEEDVPPVLVSPSPTYTPIL 1229
Query: 666 PPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLA- 724
P Q E G+Q AS + GRAE L ++ +QE+L +
Sbjct: 1230 EDAPGPQPQAE---GSQEASWGVQ-GRAEALG----------------KVESEQEELGSG 1269
Query: 725 -VIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLP--- 780
+ E +E + R+E EED+ + P R +P + T E PP
Sbjct: 1270 EIPEGPQEEGEESREESEEDELGETLPDSTPLGFYLRSPTSP--RWDPTGEQRPPPQGET 1327
Query: 781 ----LDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDG 836
DP + A G AP + + E E GRD D + E +A G
Sbjct: 1328 GKEGWDPAVLASEGLEAPPSEKEEG--EEGEEECGRD----SDLSEEFEDLGTEAPFLPG 1381
Query: 837 QKDAAPRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPG 896
G V +L P D + EE EE ++ R PG
Sbjct: 1382 VPGEVAEPLGQVPQLLLDPAAWD-RDGESDGFADEEESGEEGEEDQEEGREPGAGRWGPG 1440
Query: 897 KEVAA 901
V +
Sbjct: 1441 SSVGS 1445
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 62.8 bits (151), Expect = 2e-09
Identities = 78/330 (23%), Positives = 113/330 (34%), Gaps = 39/330 (11%)
Query: 386 VLVVSTVTTLSVSEEVPEDLA-EEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAE----D 440
+L+ + LS ++ + ED++ EE+P G +G + P +
Sbjct: 4 ILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQ 63
Query: 441 GREKPKLPKEREELEQAQIKG-----PVDVPGREDGKEAPEEAQLDRP----GQGIAVPV 491
G KP+ P + + +G P PG+ G Q P G+ P
Sbjct: 64 GGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 123
Query: 492 GEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQE 551
+R + P P K Q + PP + G G PP P + +
Sbjct: 124 QGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 183
Query: 552 PEQGEVGKRP---GQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQ 608
P+ G+ + P G+ Q GD Q P P Q + GP P P
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGP------PPPP 237
Query: 609 AVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG----GKPPLPAEKPAPGPG 664
+ G GG K +G PPPG G Q S GKP P ++ P
Sbjct: 238 G----KPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQ 293
Query: 665 LPPEPREQRDVERAGGNQAASQLEEAGRAE 694
PP P AGGN Q AG+ +
Sbjct: 294 GPPPP--------AGGNPQQPQAPPAGQPQ 315
Score = 41.2 bits (95), Expect = 0.006
Identities = 71/323 (21%), Positives = 96/323 (29%), Gaps = 60/323 (18%)
Query: 564 AQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGG 623
AQ L E E P + P+ Q + GP P P + G GG
Sbjct: 16 AQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGP------PPPPG----KPQGPPPQGG 65
Query: 624 EKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
K +G PPPG G P D P P KP G PP+ GGNQ
Sbjct: 66 NKPQGPPPPGKPQG----PPPQGDKSRSPRSPPGKPQ---GPPPQ----------GGNQP 108
Query: 684 ASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEED 743
G+ Q + ++ + + Q +
Sbjct: 109 QGPPPPPGKP---------------QGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRS 153
Query: 744 KPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPA--PSQDLNQR 801
P + + G P+G P GK + P P P G+P P Q R
Sbjct: 154 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGP---PPPGKPQGPPPQGDKSR 210
Query: 802 SLEHSEGPV-------GRDPAGPP------DGGPDTEPRAAQAKLRDGQKDAAPRAAGTV 848
S + G G P GPP G P Q G+ P G+
Sbjct: 211 SSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSK 270
Query: 849 KELPKGPEQVPVPDPAREAGGPE 871
+ + P P P +E P+
Sbjct: 271 SQSARSPPGKPQGPPQQEGNNPQ 293
Score = 37.7 bits (86), Expect = 0.061
Identities = 64/294 (21%), Positives = 90/294 (30%), Gaps = 45/294 (15%)
Query: 754 PGAAVPRGQEAPEGKARETVENLPPLPLDPVLRA---PGGRPAPSQDLNQRSLEHSEGPV 810
P P+G P+G + + P P P + P G P P + P
Sbjct: 72 PPPGKPQGPP-PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ 130
Query: 811 GRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKE---LPKGPEQVPVPDPAREA 867
G P G P G P ++ + G+ P G + P G Q P P ++
Sbjct: 131 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKP 190
Query: 868 GGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGAETGDPRMK 927
GP + P D + SQ PGK + GP G P+
Sbjct: 191 QGPPPPGKPQGPPPQGDKSRSSQ--SPPGKPQGPP-----PQGGNQPQGPPPPPGKPQGP 243
Query: 928 PKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDHGGHLEMRK 987
P Q GG + P + P QGG + R
Sbjct: 244 PPQ------------GGNKPQGPPPPGKPQGPP-------AQGGSKSQ--------SARS 276
Query: 988 ARGGDHVPVSHE--QPRGGEDAAVQEPRQRPEPELGLKRAVPGGQRPDNAKPNR 1039
G P E P+G A P+Q P G + P + P +P+R
Sbjct: 277 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP--RPPQGGRPSR 328
Score = 30.8 bits (68), Expect = 7.5
Identities = 37/166 (22%), Positives = 48/166 (28%), Gaps = 28/166 (16%)
Query: 735 QQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAP 794
Q ED + + P P+G P+G PP P P P G
Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGP--------PPPPGKPQGPPPQG---- 64
Query: 795 SQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKE---L 851
P G P G P G P ++ + G+ P G +
Sbjct: 65 -----------GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 113
Query: 852 PKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGK 897
P G Q P P GP + P D + R PGK
Sbjct: 114 PPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKS--RSPRSPPGK 157
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 62.4 bits (150), Expect = 2e-09
Identities = 114/482 (23%), Positives = 167/482 (34%), Gaps = 84/482 (17%)
Query: 604 HPRPQAVLSEQQNGLAVGGGEKAKGGP------PPGNAAGDTGQPAEDSDHGGKPPLPAE 657
HP P + + L +GG G P PPG A G PLP +
Sbjct: 816 HPHPPWLPRTRSPSLWMGGHSYGLGHPALHQNLPPGFPASVAGPVPSVF------PLPQD 869
Query: 658 KPAPGPGLPPEPREQRD-------VERA-------GGNQAASQLEEAGRAEMLDHAVLLQ 703
P LP EP +++A GG AS ++ G+ + LL+
Sbjct: 870 APTQLVILPSEPTPHSAPHALADVMDQASLWPPMYGGRGPASHMQHPGQLPVYSRPQLLR 929
Query: 704 VIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQE 763
+ +QQ+R Q K E+QH ++ + QE + + +P A P
Sbjct: 930 QQELYALQQQRAAQFQRK----PEDQHLDLEEPAQE------KAPKSTHKPVALTPTAPG 979
Query: 764 APEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPD 823
AP A T LPP P + P P P P + GP
Sbjct: 980 APSPAAGPT--KLPPCCHPPDPKPPASSPTPP--------PRPSAPCTLNVCPASSPGPG 1029
Query: 824 TEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQ 883
+ R+A+ K +GQ+ A + +LP G + P+ E P Q
Sbjct: 1030 SRVRSAEEKNGEGQQSTAD-IITSEPDLPPGYLR-PMAGLGFSLPSDVHSSNLEDPETMQ 1087
Query: 884 DVTGGSQDRKK----PGKEVAATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAA 939
G+Q PG+ + S+ E L++G T D P R
Sbjct: 1088 TTAPGAQPEPTRTFLPGEPPPCSPRSL--EEPGLLSGAREATQDLAATPYPTER------ 1139
Query: 940 DLPGGAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDH---GGHLEMRKARGGDHVPV 996
G +G AA P + EL+ + E GG + H GG E R G+ P
Sbjct: 1140 ----GPQGKAADPSPLEGLQELQCAALLEAGGPEATGQAHSTQGGAREERSREEGEQGPS 1195
Query: 997 SHE-----QPRGGEDAAVQEPRQRPEP--------ELGLKRAVPG----GQRPDNAKPNR 1039
S + R G A+++ ++P P ELG + G PDN+ P R
Sbjct: 1196 SGASSQVLEQRAGSPGALEDEGEQPAPEEDELEEDELGQQSMEDSEEDCGGAPDNSHPPR 1255
Query: 1040 DL 1041
L
Sbjct: 1256 AL 1257
Score = 37.7 bits (86), Expect = 0.061
Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 23/186 (12%)
Query: 527 AGGKAPGVQGQMAPPLPDSEREKQEPEQGE--------VGKRPGQAQALEEAGDLPEDPQ 578
A G+A QG ER ++E EQG + +R G ALE+ G+ P +
Sbjct: 1170 ATGQAHSTQGGAR-----EERSREEGEQGPSSGASSQVLEQRAGSPGALEDEGEQPAPEE 1224
Query: 579 KVPEAD--GQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAA 636
E D GQ +++ ++ED G HP + + G+ PP
Sbjct: 1225 DELEEDELGQQSMEDSEEDCGGAPDNSHPPRALPGLDALVAATINLGDLPSDSPPDPQPP 1284
Query: 637 GDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEML 696
+G P+ PLP G L E + ++R + + EE A L
Sbjct: 1285 AASGPPS-------TVPLPHSSGIHGIALLSELADLA-IQRQRSERTVPEEEEDVLAFNL 1336
Query: 697 DHAVLL 702
H L
Sbjct: 1337 QHLATL 1342
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 61.6 bits (148), Expect = 4e-09
Identities = 147/567 (25%), Positives = 209/567 (36%), Gaps = 100/567 (17%)
Query: 437 VAEDGR--EKPKLPKEREELEQAQIKGPVDVPGREDGKEAP-EEAQLDRPGQGIAVPVG- 492
V E GR E+ + ++ E EQ + GP +PG P + +D PG G++ G
Sbjct: 2051 VGEAGRPGERGERGEKGERGEQGR-DGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGP 2109
Query: 493 ---EAHRHEPPVPHDKVVVDEGQDREVP----EENKPPSRHAGGKAPGVQGQMAPPLPDS 545
+ + EP D+ DR VP + +P R G PG+ G+ P+
Sbjct: 2110 PGLKGAKGEPGSNGDQ---GPKGDRGVPGIKGDRGEPGPRGQDGN-PGLPGERGMAGPEG 2165
Query: 546 EREKQEPE--QGEVGKR--PGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDR 601
+ Q P G VG PG A AG P PQ G+P + GP R
Sbjct: 2166 KPGLQGPRGPPGPVGGHGDPGPPGAPGLAG--PAGPQGPSGLKGEPG------ETGPPGR 2217
Query: 602 GLH-----------PRPQAVLSEQQN-GLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG 649
GL P P ++ Q + GL GE K G P G G +D D G
Sbjct: 2218 GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAP-----GRDGASGKDGDRG 2272
Query: 650 GKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQ 709
P +P PGP P+ + A G QA L A + + ++ E
Sbjct: 2273 S-PGVPGSPGLPGP---VGPKGEPGPTGAPG-QAVVGLPGAKGEKGAPGGLAGDLVGEPG 2327
Query: 710 VQQKRLLD--QQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEG 767
+ R L + EK A + E ++ ++ P +PG VP P
Sbjct: 2328 AKGDRGLPGPRGEKGEA---GRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP 2384
Query: 768 KARETVENLPPLPLDP-VLRAPG--------GRPAPSQDLNQRSLEHSEGPVGRD----P 814
+ LP LP P V+ PG G+P PS +R L GP GR+ P
Sbjct: 2385 PGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPS---GERGLA---GPPGREGIPGP 2438
Query: 815 AGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPAREAGGPEERL 874
GPP P A D KG V +P P E G P R
Sbjct: 2439 LGPPGPPGSVGPPGASGLKGD-----------------KGDPGVGLPGPRGERGEPGIRG 2481
Query: 875 AEEFPGQS--QDVTG--GSQDRKKPGKEVAATGTSILKEANWLVAGP----GAETGDPRM 926
+ PGQ + +TG GS+ + +V + G K + ++ GP GA+
Sbjct: 2482 EDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGER 2541
Query: 927 KPKQVSRDLGLAADL-PGGAEGAAAQP 952
P+ + D G D G +G+ +P
Sbjct: 2542 GPRGLDGDKGPRGDNGDPGDKGSKGEP 2568
Score = 58.2 bits (139), Expect = 4e-08
Identities = 171/652 (26%), Positives = 218/652 (33%), Gaps = 146/652 (22%)
Query: 430 AQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVD---VPGREDGKEAPE-EAQLDRPGQ 485
A +P A + P LP R + + +GP PG+ G E P + PG
Sbjct: 1313 AGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGP 1372
Query: 486 ----GIAVPVGEAHRHEPP-VPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAP 540
G P+G+ PP +P + D+G DR E PP GG APG G P
Sbjct: 1373 SGPPGPRGPLGDPGPRGPPGLPGTAMKGDKG-DRG---ERGPPGPGEGGIAPGEPG--LP 1426
Query: 541 PLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKED---LG 597
LP S QG VG PG+ E GD + +P G P Q + +G
Sbjct: 1427 GLPGSPGP-----QGPVGP-PGKKG---EKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477
Query: 598 P-GDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP--------PG-----NAAGDTGQPA 643
P GDRG P P L E GEK + GPP PG A G G P
Sbjct: 1478 PKGDRGF-PGP---LGE--------AGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPG 1525
Query: 644 EDSDHG--GKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVL 701
G G+P P + GP + E+ DV AG A E G +
Sbjct: 1526 PTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL------ 1579
Query: 702 LQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRG 761
V+ + D+ L + ++ + +P PG PRG
Sbjct: 1580 --VLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRP------GPPGPVGPRG 1631
Query: 762 QEAPEG-KARETVENLPPLPLD---------PVLRAPGGRPAPSQDLNQRSLEHSEGPVG 811
++ G K E P LP P +R P G D + S G G
Sbjct: 1632 RDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSG 1691
Query: 812 -------RDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPA 864
P GPP DT P A + + PR PKG +P
Sbjct: 1692 PKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRG-------PKGDPGLP----- 1739
Query: 865 REAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGAETGD- 923
G P ER E F G G Q PG V GP E GD
Sbjct: 1740 ---GAPGERGIEGFRGPP-----GPQG--DPG-----------------VRGPAGEKGDR 1772
Query: 924 -PRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQ--PELRVISDGEQG---------- 970
P + D A P G GAA + R P LR GEQG
Sbjct: 1773 GPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLR----GEQGLPGPSGPPGL 1828
Query: 971 -GQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPELG 1021
G+ G D L + GD + +G A+ +E R P+ E G
Sbjct: 1829 PGKPGE--DGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERG 1878
Score = 54.3 bits (129), Expect = 6e-07
Identities = 148/625 (23%), Positives = 209/625 (33%), Gaps = 118/625 (18%)
Query: 457 AQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREV 516
A KG PG + +P A PG P + P +P + E R
Sbjct: 1292 ATAKGERGFPGADGRPGSPGRA--GNPG----TPGAPGLKGSPGLPGPRGDPGERGPRGP 1345
Query: 517 PEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR-----PGQAQALEEAG 571
E P + GG+ PG+ G+ P P + P G+ G R PG A G
Sbjct: 1346 KGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGP-LGDPGPRGPPGLPGTAMK----G 1400
Query: 572 DLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP 631
D + ++ P G+ + P + L PG G P PQ + G+K + G
Sbjct: 1401 DKGDRGERGPPGPGEGGIAPGEPGL-PGLPG-SPGPQGPVGPP--------GKKGEKGDS 1450
Query: 632 PGNAAGDTGQPAEDSDHGGKPPLPAEKPA-----PGP---------GLPPEPREQRDVER 677
A G GQP + G + P A P PGP PP P R +
Sbjct: 1451 EDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG 1510
Query: 678 AGGNQAAS-----------QLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVI 726
G A Q E+ D AV+ + + ++ + + +
Sbjct: 1511 VAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGV 1570
Query: 727 EEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPV-L 785
+ E P + + +PG P+G G T PP P
Sbjct: 1571 Q-------------GERGPPGLVLPGDPG---PKGDPGDRGPIGLTGRAGPPGDSGPPGE 1614
Query: 786 RAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAA 845
+ GRP P + R + G G + GPP G P +A + LR AP
Sbjct: 1615 KGDPGRPGPPGPVGPRGRDGEVGEKGDE--GPP-GDPGLPGKAGERGLR-----GAPGVR 1666
Query: 846 GTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTS 905
G V E KG + G P E PG S G DR +PG
Sbjct: 1667 GPVGE--KG-----------DQGDPGEDGRNGSPGSS----GPKGDRGEPGPPG------ 1703
Query: 906 ILKEANWLVAGPGA-ETGDPRMKPKQVSRDLGLAADLPG-----GAEGAAAQPQAVLRQP 959
+ GPGA E G+P + ++ R LPG G EG P P
Sbjct: 1704 --PPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRG-PPGPQGDP 1760
Query: 960 ELRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPE 1019
+R + GE+G + LD L+ + G P G +P + P
Sbjct: 1761 GVRGPA-GEKGDRGPPGLDGRSGLDGKPGAAGPSGP-------NGAAGKAGDPGRDGLPG 1812
Query: 1020 LGLKRAVPGGQRPDN--AKPNRDLK 1042
L ++ +PG P KP D K
Sbjct: 1813 LRGEQGLPGPSGPPGLPGKPGEDGK 1837
Score = 48.1 bits (113), Expect = 5e-05
Identities = 134/567 (23%), Positives = 194/567 (34%), Gaps = 103/567 (18%)
Query: 459 IKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVV---------- 508
++GPV G D + E+ + PG + P G+ PP P ++V
Sbjct: 1665 VRGPVGEKG--DQGDPGEDGRNGSPGS--SGPKGDRGEPGPPGPPGRLVDTGPGAREKGE 1720
Query: 509 --DEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEP--EQGEVGK----- 559
D GQ+ + P A G+ G++G PP P + + P E+G+ G
Sbjct: 1721 PGDRGQEGPRGPKGDPGLPGAPGER-GIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDG 1779
Query: 560 ------RPGQAQ------ALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGP-GDRGLHPR 606
+PG A A +AGD P DG P ++ + GP G GL +
Sbjct: 1780 RSGLDGKPGAAGPSGPNGAAGKAGD--------PGRDGLPGLRGEQGLPGPSGPPGLPGK 1831
Query: 607 P----QAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG--------GKPPL 654
P + L+ + G + KG A+G G+ + G G P L
Sbjct: 1832 PGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGL 1891
Query: 655 PAEKPAPGPGLP-----PEPREQRDVERAGGNQA----ASQLEEAGRAEMLDHAVLLQVI 705
P PG G P P+ R + G Q E G +D + I
Sbjct: 1892 PGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGI 1951
Query: 706 KEQQVQQ--KRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQE 763
K +++ + + L V E + ++ K + E G RG
Sbjct: 1952 KASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDP 2011
Query: 764 APEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGP- 822
P+G P L L G P PS + G GR G P
Sbjct: 2012 GPQGP--------PGLAL-----GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPG 2058
Query: 823 DTEPRAAQAKLRDGQKDAAPRAAGTV-KELPKGPE---QVPVPDPAREAGGPEERLAEEF 878
+ R + + + +D P GT P GP+ P P + E G P + A+
Sbjct: 2059 ERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGE 2118
Query: 879 PGQSQD--------VTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGAETG--DPRMKP 928
PG + D V G DR +PG + E +AGP + G PR P
Sbjct: 2119 PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERG--MAGPEGKPGLQGPRGPP 2176
Query: 929 KQVSRDLGLAADLPGGAEGAA--AQPQ 953
V G P GA G A A PQ
Sbjct: 2177 GPVG---GHGDPGPPGAPGLAGPAGPQ 2200
Score = 43.5 bits (101), Expect = 0.001
Identities = 54/191 (28%), Positives = 74/191 (38%), Gaps = 38/191 (19%)
Query: 532 PGVQGQ------MAPPLPDSER--------EKQEPEQGEVGK--RPGQAQALEEAGDLPE 575
PG++G+ M P ER + ++ ++GE G RPG A E G+
Sbjct: 2607 PGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGE--- 2663
Query: 576 DPQKVPEADGQPAVQPAKEDL-GP-GDRGLHPRPQAVLSEQQNGL----AVGG-----GE 624
P GQ P KE L GP GDRG +P + + G +GG G
Sbjct: 2664 -----PGVPGQSGA-PGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGN 2717
Query: 625 KAKGGPP-PGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
GPP P + G G G + P P E+ PG+P P E+ + R G
Sbjct: 2718 DGSAGPPGPPGSVGPRGPEGLQGQKGERGP-PGERVVGAPGVPGAPGERGEQGRPGPAGP 2776
Query: 684 ASQLEEAGRAE 694
+ EA E
Sbjct: 2777 RGEKGEAALTE 2787
Score = 42.7 bits (99), Expect = 0.002
Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 35/192 (18%)
Query: 480 LDRPGQGIAVPVGEAHRHEPPVPHD-KVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQM 538
LD+ G+A + +A P P V +GQ E E G++GQ+
Sbjct: 1222 LDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEM-------------GLRGQV 1268
Query: 539 APPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGP 598
PP D + G G PG A A E G P ADG+P P
Sbjct: 1269 GPP-GDPGLPGRTGAPGPQGP-PGSATAKGERG--------FPGADGRPG--------SP 1310
Query: 599 GDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEK 658
G G P A + GL G+ + GP G+ G P + G P LP K
Sbjct: 1311 GRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPR--GPKGEPGAPGQVIGGEG-PGLPGRK 1367
Query: 659 PAPGPGLPPEPR 670
PGP PP PR
Sbjct: 1368 GDPGPSGPPGPR 1379
Score = 42.7 bits (99), Expect = 0.002
Identities = 81/287 (28%), Positives = 99/287 (34%), Gaps = 35/287 (12%)
Query: 395 LSVSEEVPEDLAEEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAEDGREKPKLPKEREEL 454
+SV E P E+ P G G K E Q P + R P + +R E
Sbjct: 2094 VSVDEPGPGLSGEQGPPGLKGA-----KGEPGSNGDQGP-----KGDRGVPGIKGDRGEP 2143
Query: 455 EQAQIKGPVDVPGREDGKEAPEEAQLDRPG-QGIAVPVGEAHRHEPPVPHDKVVV----- 508
G +PG E G PE +PG QG P G H P P +
Sbjct: 2144 GPRGQDGNPGLPG-ERGMAGPE----GKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAG 2198
Query: 509 DEGQD--REVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQA 566
+G + P E PP R G G G PP P QG G PGQ
Sbjct: 2199 PQGPSGLKGEPGETGPPGRGLTGPT-GAVGLPGPPGPSG----LVGPQGSPGL-PGQVGE 2252
Query: 567 LEEAGDLPEDPQKVPEAD-GQPAVQPAKEDLGP-GDRGLHPRPQAVLSEQQNGLAVGGGE 624
+ G D + D G P V + GP G +G P P + GL GE
Sbjct: 2253 TGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKG-EPGPTGAPGQAVVGLPGAKGE 2311
Query: 625 KAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPRE 671
K G P G A G+P D G P + A G P +P E
Sbjct: 2312 K---GAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGE 2355
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 58.5 bits (140), Expect = 3e-08
Identities = 81/323 (25%), Positives = 118/323 (36%), Gaps = 52/323 (16%)
Query: 386 VLVVSTVTTLSVSEEVPEDLA-EEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAEDGREK 444
+L+ + LS ++ + ED++ EE+P G+ EG + P
Sbjct: 4 ILLSVALLALSSAQSLNEDVSQEESPSVISGKPEGRRPQGGNQPQRTPP----------P 53
Query: 445 PKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHD 504
P P+ R Q +GP PG+ +G P QG G + PP P
Sbjct: 54 PGKPEGRPPQGGNQSQGPPPRPGKPEGP----------PPQG-----GNQSQGPPPRPGK 98
Query: 505 KVVVDEGQDREVPEENK-PPSRHAGGKAPGVQG---QMAPPLPDSEREKQEPEQGEVGK- 559
EGQ + +++ PP R + P QG PP + E P+ G +
Sbjct: 99 P----EGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG 154
Query: 560 ---RPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQN 616
RPG+ + G Q P G+P P + G +G PRP +
Sbjct: 155 PPPRPGKPEGPPPQGG--NQSQGPPPHPGKPEGPPPQG--GNQSQGPPPRPG-----KPE 205
Query: 617 GLAVGGGEKAKGGPP-PGNAAGDTGQ----PAEDSDHGGKPPLPAEKPAPGPGLPPEPRE 671
G GG +++G PP PG G Q P H GKP P + P PP P
Sbjct: 206 GPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGR 265
Query: 672 QRDVERAGGNQAASQLEEAGRAE 694
+ GGN AG+ +
Sbjct: 266 PQGPPPPGGNPQQPLPPPAGKPQ 288
Score = 48.9 bits (115), Expect = 3e-05
Identities = 71/309 (22%), Positives = 91/309 (29%), Gaps = 80/309 (25%)
Query: 577 PQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP-PGNA 635
PQ+ P G+P +P + G +G PRP + G GG +++G PP PG
Sbjct: 47 PQRTPPPPGKPEGRPPQG--GNQSQGPPPRPG-----KPEGPPPQGGNQSQGPPPRPGKP 99
Query: 636 AGDTGQPAEDSDHGGKPPLPAEKPAPGP-------GLPPEPREQRDVERAGGNQAASQLE 688
G Q S G PP P + P P G PP P + GGNQ+
Sbjct: 100 EGQPPQGGNQSQ--GPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 157
Query: 689 EAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQV 748
G+ E P Q
Sbjct: 158 RPGKP------------------------------------------------EGPPPQG 169
Query: 749 EVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAP-GGRPAPSQDLNQRSLEHSE 807
+ P E P + + PP P P P GG + E
Sbjct: 170 GNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 229
Query: 808 GPVGRDPAGPP------DGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVP 861
G P GPP G P E Q G+ P P G Q P+P
Sbjct: 230 SQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPP--------PGGNPQQPLP 281
Query: 862 DPAREAGGP 870
PA + GP
Sbjct: 282 PPAGKPQGP 290
Score = 46.6 bits (109), Expect = 1e-04
Identities = 59/239 (24%), Positives = 86/239 (35%), Gaps = 38/239 (15%)
Query: 444 KPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLD----RPGQGIAVPVGEAHRHEP 499
+P P+ + Q +GP PG+ +G Q RPG+ P ++ +
Sbjct: 95 RPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG 154
Query: 500 PVPHDKVVVDEGQDREVPEENKPPSRHAG---GKAP--GVQGQMAPPLPDSEREKQEPEQ 554
P P EG + +++ P H G G P G Q Q PP P + E P+
Sbjct: 155 PPPRPGK--PEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP-GKPEGPPPQG 211
Query: 555 GEVGK----RPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAV 610
G + RPG+ + G PQ P G+P P +E G++ P P
Sbjct: 212 GNQSQGPPPRPGKPEGPPSQGG--NKPQGPPPHPGKPQGPPPQE----GNKPQRPPPPG- 264
Query: 611 LSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKP-APGPGLPPE 668
+ +G PPPG P G PP +P P G PP+
Sbjct: 265 --------------RPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQPPQ 309
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 57.4 bits (137), Expect = 7e-08
Identities = 61/259 (23%), Positives = 83/259 (32%), Gaps = 47/259 (18%)
Query: 442 REKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPV 501
+E P PK+ + V PGR + + A + Q + +G+ H P
Sbjct: 495 KESPPKPKD-------PVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS 547
Query: 502 PHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPL-PDSEREKQEPEQGEVGKR 560
PH + P+ PP H GG++ Q P L P P G+
Sbjct: 548 PHTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQP 607
Query: 561 PGQAQALEEAG------------DLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQ 608
PGQ A + P P P P + GP P P
Sbjct: 608 PGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGP------PNPM 661
Query: 609 AVLSEQQNGLAVGG---------------GEKAKGGPPPGNAAGDTGQPAEDSDHGGKPP 653
A+ SE +GL G++ P P AG G P H G P
Sbjct: 662 ALPSE--HGLEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAG--GNPETAQPHAGTLP 717
Query: 654 LPAEKPAPG--PGLPPEPR 670
P P P P +PP P+
Sbjct: 718 RPRPVPKPRNRPSVPPPPQ 736
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 56.6 bits (135), Expect = 1e-07
Identities = 65/265 (24%), Positives = 83/265 (31%), Gaps = 42/265 (15%)
Query: 438 AEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRH 497
+ R P P+ Q +GP PG+ G P QG P G
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----------PPQGGNKPQG----- 214
Query: 498 EPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEV 557
PP P D + PP + G G PP P + + P+ G
Sbjct: 215 -PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 273
Query: 558 GKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQ----PAKEDLGPGDRGLHPRPQAVLSE 613
+ P P PQ P G + P K P G P+
Sbjct: 274 PQGPPP----------PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG 323
Query: 614 QQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG----GKPPLPAEKPAPGPGLPPEP 669
+ G GG K +G PPPG G Q S GKP P ++ P PP P
Sbjct: 324 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPP 383
Query: 670 REQRDVERAGGNQAASQLEEAGRAE 694
AGGN Q AG+ +
Sbjct: 384 --------AGGNPQQPQAPPAGQPQ 400
Score = 56.2 bits (134), Expect = 2e-07
Identities = 76/313 (24%), Positives = 106/313 (33%), Gaps = 59/313 (18%)
Query: 386 VLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAEDGREKP 445
+L+ + LS ++ + ED+++E E+ L A +P A + G KP
Sbjct: 4 ILLSVALLALSSAQNLNEDVSQE---------------ESPSLIAGNPQGAPPQGGN-KP 47
Query: 446 KLPKEREELEQA-------QIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHE 498
+ P Q Q +GP PG+ G P QG P G
Sbjct: 48 QGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----------PPQGGNKPQG------ 91
Query: 499 PPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVG 558
P P K Q + PP + G G PP P + + P+ G
Sbjct: 92 -PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 559 KRP---GQAQALEEAGDLPEDPQKVPEADGQ-PAVQPAKEDLGPGDRGLHPRPQAVLSEQ 614
+ P G+ Q GD + P Q P Q + GP P P +
Sbjct: 151 QGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP------PPPPG----K 200
Query: 615 QNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAP-----GPGLPPEP 669
G GG K +G PPPG G Q S PP + P P G PP P
Sbjct: 201 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPP 260
Query: 670 REQRDVERAGGNQ 682
+ + GGN+
Sbjct: 261 GKPQGPPPQGGNK 273
Score = 56.2 bits (134), Expect = 2e-07
Identities = 63/250 (25%), Positives = 81/250 (32%), Gaps = 35/250 (14%)
Query: 442 REKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPV 501
R P P+ Q +GP PG+ G P QG P G PP
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----------PPQGGNKPQG------PPP 155
Query: 502 PHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRP 561
P D + PP + G G PP P + + P+ G + P
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 215
Query: 562 ---GQAQALEEAGDLPEDPQKVPEADGQ-PAVQPAKEDLGPGDRGLHPRPQAVLSEQQNG 617
G+ Q GD + P Q P Q + GP P P + G
Sbjct: 216 PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGP------PPPPG----KPQG 265
Query: 618 LAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAP-----GPGLPPEPREQ 672
GG K +G PPPG G Q S PP + P P G PP P +
Sbjct: 266 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKP 325
Query: 673 RDVERAGGNQ 682
+ GGN+
Sbjct: 326 QGPPPQGGNK 335
Score = 49.3 bits (116), Expect = 2e-05
Identities = 82/373 (21%), Positives = 110/373 (29%), Gaps = 70/373 (18%)
Query: 522 PPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRP---GQAQALEEAGDLPEDPQ 578
PP + G G PP P + + P+ G + P G+ Q GD P+
Sbjct: 53 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR 112
Query: 579 KVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGD 638
P P Q + GP P P + G GG K +G PPPG G
Sbjct: 113 SPPGKPQGPPPQGGNQPQGP------PPPPG----KPQGPPPQGGNKPQGPPPPGKPQGP 162
Query: 639 TGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDH 698
Q S PP + P PP+ GGNQ G
Sbjct: 163 PPQGDNKSRSSRSPPGKPQGP------PPQ----------GGNQPQGPPPPPG------- 199
Query: 699 AVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAV 758
K Q + Q + + + P + + G
Sbjct: 200 -------KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ 252
Query: 759 PRGQEAPEGKARE------TVENLPPLPLDPV------------LRAPGGRPA--PSQDL 798
P+G P GK + PP P P R+P G+P P Q
Sbjct: 253 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG 312
Query: 799 NQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQV 858
NQ +GP P G P G P Q G+ P G+ + P
Sbjct: 313 NQ-----PQGPP--PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 365
Query: 859 PVPDPAREAGGPE 871
P P +E P+
Sbjct: 366 PQGPPQQEGNNPQ 378
Score = 43.1 bits (100), Expect = 0.001
Identities = 76/342 (22%), Positives = 102/342 (29%), Gaps = 43/342 (12%)
Query: 576 DPQKVPEADGQ----PAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP 631
+PQ P G P P K P G P+ + G GG K +G PP
Sbjct: 35 NPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 94
Query: 632 PGNAAGDT-------------GQPAEDSDHGGK----PPLPAEKPAPGPGL-------PP 667
PG G G+P GG PP P KP P PP
Sbjct: 95 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 154
Query: 668 EPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIE 727
P + + G N++ S G+ + Q + Q Q +
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQ----GPPPQGGNQPQGPPPPPGKPQG---PPPQ 207
Query: 728 EQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPV--- 784
+K + P Q + + + P + P + + PP P P
Sbjct: 208 GGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 267
Query: 785 ---LRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAA 841
P G P P + S+ R P G P G P Q K
Sbjct: 268 PQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 327
Query: 842 PRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQ 883
P G K P+GP P GG + R A PG+ Q
Sbjct: 328 PPPQGGNK--PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQ 367
Score = 40.8 bits (94), Expect = 0.007
Identities = 74/332 (22%), Positives = 103/332 (31%), Gaps = 36/332 (10%)
Query: 735 QQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAP 794
Q ED + + P A P+G P+G + P P P G P P
Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGG--NQPQGPPPP 74
Query: 795 SQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKG 854
+ P G P G P G P ++ + G+ P G + P
Sbjct: 75 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 134
Query: 855 PEQVP-------------VPDPAREAGGP-----EERLAEEFPGQSQ--DVTGGSQDRKK 894
P P P P + G P + R + PG+ Q GG+Q +
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP 194
Query: 895 PGKEVAATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEG----AAA 950
P G + GP G P+ P Q A PG +G
Sbjct: 195 PPPPGKPQGPP--PQGGNKPQGP-PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGN 251
Query: 951 QPQAVLRQPELRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHE---QPRGGEDA 1007
QPQ P + QGG + G + +GG S +P+G
Sbjct: 252 QPQGP-PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQ 310
Query: 1008 AVQEPRQRPEPELGLKRAVP--GGQRPDNAKP 1037
+P Q P P G + P GG +P P
Sbjct: 311 GGNQP-QGPPPPPGKPQGPPPQGGNKPQGPPP 341
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 56.2 bits (134), Expect = 2e-07
Identities = 145/589 (24%), Positives = 191/589 (32%), Gaps = 137/589 (23%)
Query: 471 GKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGK 530
G P + +R G A P+G R P P ++ P E K P AG
Sbjct: 1063 GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA-----GEKGAPGE-KGPQGPAG-- 1114
Query: 531 APGVQGQMAPPLPDSEREK--QEPEQGEVGKRPGQAQALEEAGDL-PEDPQKVPEADGQP 587
GVQG + P P ++ ++GE+G+ PGQ + + G+ P P + G P
Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGLQGPVGAP 1173
Query: 588 AVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP-PPG-----NAAGDTGQ 641
+ A D PG RG QQ G E A+G P PPG G G+
Sbjct: 1174 GI--AGGDGEPGPRG-----------QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1220
Query: 642 PAEDSDHG--GKPPLPAEKPAPGPGLPPEPR-EQRDVERAGGNQAASQLEEAGRAEMLDH 698
E+ D G G P P + GP P+ V GG + EAG
Sbjct: 1221 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1280
Query: 699 AVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAV 758
A + E R E E P PGAA
Sbjct: 1281 AGVGGPKGE-----------------------------RGEKGEAGP--------PGAAG 1303
Query: 759 PRGQEAPEG----KARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRD- 813
P G + P G K P P P P G+ D + GP G
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1363
Query: 814 ---PAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAG------TVKELPKGPEQVPVPDPA 864
P GPP G P AA A+ R G+K A A T P+GP P P+
Sbjct: 1364 EAGPPGPP--GKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1421
Query: 865 REAGGP--EERLAEE--------------FPGQSQDVTGGSQDRKKPG------------ 896
R GP E+ L PG D G ++ PG
Sbjct: 1422 RGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD-PGSKGEKGHPGLIGLIGPPGEQG 1480
Query: 897 ----KEVAATGTSILKEANWLVAGPGAETGDPR-------MKPKQVSRDLGLAAD----- 940
+ + T S + + + GP G P PK G A
Sbjct: 1481 EKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG 1540
Query: 941 LPG-----GAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDHGGHLE 984
LPG G G QP +L + R ++G Q + LD+ +E
Sbjct: 1541 LPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGME 1589
Score = 51.6 bits (122), Expect = 4e-06
Identities = 148/595 (24%), Positives = 196/595 (32%), Gaps = 100/595 (16%)
Query: 460 KGPVDVPGRE--DGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVP 517
+GP PG + G + P +R QG PVG PP P P
Sbjct: 906 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--------------P 951
Query: 518 EENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEP--EQGEVGKR--PGQAQALEEAGDL 573
++ P G QG+ PP P Q P E G +G+R PG
Sbjct: 952 GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG-------- 1003
Query: 574 PEDPQKVPEADGQPAVQPAKEDLGP-------GDRGLHPRPQAVLSEQQNGL-AVGGGEK 625
P Q +P A G+ + AK D GP G GL P + GL G
Sbjct: 1004 PPGEQGLPGAAGK---EGAKGDPGPQGISGKDGPAGLRGFPG------ERGLPGAQGAPG 1054
Query: 626 AKGGPPPGNAAGDTGQPAEDSDHGGKPP--LPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
KGG P G G P E G P LP PGP PP P ++ G Q
Sbjct: 1055 LKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR---PGPQGPPGPAGEKGAPGEKGPQG 1111
Query: 684 ASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEED 743
+ + L + + + + +K + ++ +
Sbjct: 1112 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Query: 744 KPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSL 803
P EPG PRGQ+ G+ + P P P+ G P P + +
Sbjct: 1172 APGIAGGDGEPG---PRGQQGMFGQKGDEGARGFPGPPGPI--GLQGLPGPPGEKGENG- 1225
Query: 804 EHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKEL-PKG-PEQVPVP 861
GP+G P GPP PR Q P + G+V + KG P + P
Sbjct: 1226 --DVGPMG--PPGPPG------PRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1275
Query: 862 DPAREA--GGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGA 919
P EA GGP+ E+ G + PG + GP
Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN-----------PGPVG 1324
Query: 920 ETGDPRM--KPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVISDGEQG--GQQGH 975
GDP +P +D G+ D G +G QP GE G G G
Sbjct: 1325 FPGDPGPPGEPGPAGQD-GVGGD--KGEDGDPGQPGP--------PGPSGEAGPPGPPGK 1373
Query: 976 RLDHG-GHLEMRKARGGDHVPVSHEQPRGGE-DAAVQEPRQRPEPELGLKRAVPG 1028
R G E R+ G E P G Q P +P PE GL R +PG
Sbjct: 1374 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE-GL-RGIPG 1426
Score = 44.3 bits (103), Expect = 7e-04
Identities = 68/248 (27%), Positives = 82/248 (33%), Gaps = 38/248 (15%)
Query: 445 PKLPKEREELEQAQIKGPVDVPGRE--------DGKEAPEEAQLDRPGQGIAVPVGEAHR 496
P P E+ E GP PG DG + P + G G GEA
Sbjct: 1215 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1274
Query: 497 HEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEP---- 552
PP + V +R E PP A G G PP D + P
Sbjct: 1275 PGPP--GEAGVGGPKGERGEKGEAGPPG------AAGPPGAKGPPGDDGPKGNPGPVGFP 1326
Query: 553 -EQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVL 611
+ G G+ PG A GD ED P G P P+ E PG G P A
Sbjct: 1327 GDPGPPGE-PGPAGQDGVGGDKGEDGD--PGQPGPPG--PSGEAGPPGPPGKRGPPGAAG 1381
Query: 612 SEQQNGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHG--------GKPPLPAEKP 659
+E + G GE GPP P G G+P + G G P +
Sbjct: 1382 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1441
Query: 660 APGPGLPP 667
PGP PP
Sbjct: 1442 PPGPMGPP 1449
Score = 44.3 bits (103), Expect = 7e-04
Identities = 79/284 (27%), Positives = 98/284 (34%), Gaps = 41/284 (14%)
Query: 408 EAPGGRLGEAEGL-MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVP 466
+ P G +G G+ K E P E G PK ER E +A G P
Sbjct: 1251 QGPPGSVGSVGGVGEKGEPGEAGNPGPP---GEAGVGGPK--GERGEKGEAGPPGAAGPP 1305
Query: 467 GRED--GKEAPEEAQLDRPGQGIAVPVGEAHRHEP-PVPHDKVVVDEGQDREVPEENKPP 523
G + G + P+ PG + P EP P D V D+G+D + P + PP
Sbjct: 1306 GAKGPPGDDGPK----GNPGP-VGFPGDPGPPGEPGPAGQDGVGGDKGEDGD-PGQPGPP 1359
Query: 524 SRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDL----PEDPQK 579
PG G+ PP E QGE G + G+A A G P+ P
Sbjct: 1360 GPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAK-GEAGAEGPPGKTGPVGPQGPAG 1414
Query: 580 VPEADGQPAVQ-PAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKA-KGGP------- 630
P +G + P E PG G P + GL G K KG P
Sbjct: 1415 KPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1474
Query: 631 PPGNAA--------GDTGQPAEDSDHGGKPPLPAEKPAPGPGLP 666
PPG G G P D G P P PGLP
Sbjct: 1475 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1518
Score = 43.9 bits (102), Expect = 9e-04
Identities = 133/546 (24%), Positives = 180/546 (32%), Gaps = 111/546 (20%)
Query: 544 DSEREKQEPEQGEVGKRPGQAQALEEAGDLPE-DPQKVPEADGQPAVQPAKEDLGPGDRG 602
DS+R+ E E + G+ L GDL E D + E + +P P E+ GPG
Sbjct: 361 DSQRKNSEDTLYENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKPT-SPPNEEFGPGV-- 417
Query: 603 LHPRPQAVLSEQQNGLAVGGGEKAKGGP-----------PPGNAA-----------GDTG 640
P + NG G + KG P PPG A G TG
Sbjct: 418 --PAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTG 475
Query: 641 QPAEDSDHG--GKPPLPAEKPAPGPGLPPEPREQRDVE-RAGGNQAASQLEEAGRAEMLD 697
P + D G G+P LP GLP P + R GG+ + A A+
Sbjct: 476 PPGDPGDRGPPGRPGLPG-----ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA-- 528
Query: 698 HAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVE-------- 749
+LQ + + + V + + PR V+
Sbjct: 529 -QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 587
Query: 750 --VHQEPGAAVPRGQEA-PEGKARETVENLPPLPLDPVLRA---PGGRPAPSQDLNQRSL 803
PGA RG P K + LP LP D R P G P P D R
Sbjct: 588 PGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGE 647
Query: 804 EHSEGPVGRDPAGPPDG--GPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVP 861
+ GP G P G GP P A G D P G + GP+ P P
Sbjct: 648 DGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG-VDGPPGPKGNM-----GPQGEPGP 701
Query: 862 DPAREAGGPEERLAEEFPGQSQDV--TGGSQDRKKPGKEVAATGTSILKEANWLVAGPGA 919
+ GP + PG + G + KPG L PGA
Sbjct: 702 PGQQGNPGP-----QGLPGPQGPIGPPGEKGPQGKPG----------------LAGLPGA 740
Query: 920 ETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVI--SDGEQG--GQQGH 975
+ G P K+ A PG PQ + P R + +DG +G G +G
Sbjct: 741 D-GPPGHPGKEGQSGEKGALGPPG--------PQGPIGYPGPRGVKGADGVRGLKGSKGE 791
Query: 976 RLDHG-----GHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPELGLKRAVPGGQ 1030
+ + G G + ++ GD V PRG + + R P + G P GQ
Sbjct: 792 KGEDGFPGFKGDMGLK----GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG-----PSGQ 842
Query: 1031 RPDNAK 1036
+ K
Sbjct: 843 AGEKGK 848
Score = 42.4 bits (98), Expect = 0.002
Identities = 66/251 (26%), Positives = 83/251 (33%), Gaps = 33/251 (13%)
Query: 459 IKGPVDVPGRE--DGKEAPEEAQL------DRPGQGIAVPVGEAHRHEPPVPHDKVVVDE 510
++GPV PG DG+ P Q D +G P G P P ++
Sbjct: 1166 LQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG----EK 1221
Query: 511 GQDREVPEENKP-PSRHAGGKAP-GVQGQMAPP----LPDSEREKQEPEQGEVGKRPGQA 564
G++ +V P P G + P G G PP EK EP + PG+A
Sbjct: 1222 GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1281
Query: 565 QALEEAGDLPEDPQKVPE-ADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGG 623
G+ E + P A G P + PGD G P V G
Sbjct: 1282 GVGGPKGERGEKGEAGPPGAAGPPGAKGP-----PGDDGPKGNPGPV--------GFPGD 1328
Query: 624 EKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
G P P G G ED D G+P P GP PP R A G Q
Sbjct: 1329 PGPPGEPGPAGQDGVGGDKGEDGD-PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1387
Query: 684 ASQLEEAGRAE 694
+ AE
Sbjct: 1388 EKGAKGEAGAE 1398
Score = 40.0 bits (92), Expect = 0.012
Identities = 144/625 (23%), Positives = 201/625 (32%), Gaps = 111/625 (17%)
Query: 462 PVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENK 521
P P E G P E + GE + P VV+ G E P
Sbjct: 405 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPA-----VVEPGMLVEGPPGPA 459
Query: 522 PPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVP 581
P+ G PG+QG PP +R G G RPG L A LP P +
Sbjct: 460 GPAGIMG--PPGLQGPTGPPGDPGDR-------GPPG-RPG----LPGADGLPGPPGTML 505
Query: 582 EADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKA-KGGPPPGNAAGDTG 640
+ +K GP + QA+L + + L G G P P G +G
Sbjct: 506 MLPFRYGGDGSK---GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSG 562
Query: 641 QPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAV 700
E D G + P + P PGP P R R G + E G
Sbjct: 563 AKGESGDPGPQGPRGVQGP-PGPTGKPGKR-----GRPGADGGRGMPGEPG--------- 607
Query: 701 LLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPR 760
+ R D L ++ H+ ++ + P + E G PR
Sbjct: 608 ---------AKGDRGFDGLPGLPG--DKGHR--GERGPQGPPGPPGDDGMRGEDGEIGPR 654
Query: 761 GQEAPEG-KARETVENLPPLPLDPVLRAPGGRPAPSQDLNQR------SLEHSEGPVG-- 811
G G + P P P + G P P ++ + + + GP G
Sbjct: 655 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLP 714
Query: 812 --RDPAGPP-DGGPDTEPRAAQAKLRDGQ-----KDAAPRAAGTV-KELPKGPEQVPVPD 862
+ P GPP + GP +P A DG K+ G + P+GP P P
Sbjct: 715 GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 774
Query: 863 PAREA-------GGPEERLAEEFPG-------------------QSQDVTGGSQDRKKPG 896
+ A G E+ + FPG + +D G + R P
Sbjct: 775 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPT 834
Query: 897 KEVAATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGL-AADLPGGAEGAAAQP-QA 954
+ +G + K + PG R PK + G A+ GA G A +P
Sbjct: 835 GDPGPSGQAGEKGK---LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 891
Query: 955 VLRQPELRVISDGEQG--GQQGHRLDHGGH----LEMRKARGGDHVPVSHEQPRG----- 1003
R P S G +G G+ G + GG + G PV P+G
Sbjct: 892 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPP 951
Query: 1004 GEDAAVQEPRQRPEPELGLKRAVPG 1028
G+D P QR E K PG
Sbjct: 952 GKDGLPGHPGQRGETGFQGKTGPPG 976
Score = 38.9 bits (89), Expect = 0.028
Identities = 115/461 (24%), Positives = 151/461 (32%), Gaps = 97/461 (21%)
Query: 526 HAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAGDLPEDPQKVPEA 583
H G + P QG PP D R E GE+G R PG+A G P+ P A
Sbjct: 626 HRGERGP--QGPPGPPGDDGMRG----EDGEIGPRGLPGEAGPRGLLG-----PRGTPGA 674
Query: 584 DGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPA 643
GQP + A D PG +G G + + GPP G G P
Sbjct: 675 PGQPGM--AGVDGPPGPKG------------------NMGPQGEPGPP-----GQQGNPG 709
Query: 644 EDSDHGGKPPL--PAEKPAPGP----GLPPEPREQRDVERAGGNQAASQLEEAGRAEMLD 697
G + P+ P EK G GLP + G + L G +
Sbjct: 710 PQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG 769
Query: 698 HAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAA 757
+ V + D L E+ ++ + D K + EV G
Sbjct: 770 YPGPRGV---------KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEV----GQI 816
Query: 758 VPRGQEAPE---GKARETVE-------------NLPPLPLDPVLRAPGGR------PAPS 795
PRG++ PE G+A T + +P LP P + P G P +
Sbjct: 817 GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN 876
Query: 796 QDLNQRSLEHSEGPVG-RDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKG 854
+ R + GP G R P GP P D P G + P+G
Sbjct: 877 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG--ERGPQG 934
Query: 855 PE-QVPVPDPAREAGGPEERLAEEFPGQSQDVTG--GSQDRKKPGKEVAATGTSILKEAN 911
P+ V P P G P + PGQ + TG G PG V G +
Sbjct: 935 PQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE-TGFQGKTGPPGPGGVVGPQGPT------ 987
Query: 912 WLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQP 952
GP E G P P + GL G EGA P
Sbjct: 988 -GETGPIGERGHP--GPPGPPGEQGLPG--AAGKEGAKGDP 1023
Score = 34.3 bits (77), Expect = 0.68
Identities = 63/240 (26%), Positives = 85/240 (35%), Gaps = 46/240 (19%)
Query: 461 GPVDVPGREDGKEAPEEAQLDRPG-QGIAVPVGEAHRHEPPVPHDKVVVD-----EGQDR 514
GP PG+E ++ E+ L PG QG P+G P P D +G
Sbjct: 742 GPPGHPGKEG--QSGEKGALGPPGPQG---PIGY------PGPRGVKGADGVRGLKGSKG 790
Query: 515 EVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAGD 572
E E+ P + G G +G++ P E + P+ G G PG + E G
Sbjct: 791 EKGEDGFPGFKGDMG-LKGDRGEVGQIGPRGEDGPEGPK-GRAGPTGDPGPSGQAGEKGK 848
Query: 573 LPEDPQKVPEADGQPAVQPAKEDLG----------PGDRGLHPRPQAVLSEQQNGLAVGG 622
L VP G P Q K G G RG+ +P G
Sbjct: 849 LG-----VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSR 903
Query: 623 GEKAKGGPP-PGNAAGDTGQPAEDSDHGGKPP-----LPAEKPAPGP----GLPPEPREQ 672
G + G P P +G G P + G + P P K PGP GLP P ++
Sbjct: 904 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 963
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 56.2 bits (134), Expect = 2e-07
Identities = 145/589 (24%), Positives = 191/589 (32%), Gaps = 137/589 (23%)
Query: 471 GKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGK 530
G P + +R G A P+G R P P ++ P E K P AG
Sbjct: 1012 GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA-----GEKGAPGE-KGPQGPAG-- 1063
Query: 531 APGVQGQMAPPLPDSEREK--QEPEQGEVGKRPGQAQALEEAGDL-PEDPQKVPEADGQP 587
GVQG + P P ++ ++GE+G+ PGQ + + G+ P P + G P
Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGLQGPVGAP 1122
Query: 588 AVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP-PPG-----NAAGDTGQ 641
+ A D PG RG QQ G E A+G P PPG G G+
Sbjct: 1123 GI--AGGDGEPGPRG-----------QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1169
Query: 642 PAEDSDHG--GKPPLPAEKPAPGPGLPPEPR-EQRDVERAGGNQAASQLEEAGRAEMLDH 698
E+ D G G P P + GP P+ V GG + EAG
Sbjct: 1170 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1229
Query: 699 AVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAV 758
A + E R E E P PGAA
Sbjct: 1230 AGVGGPKGE-----------------------------RGEKGEAGP--------PGAAG 1252
Query: 759 PRGQEAPEG----KARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRD- 813
P G + P G K P P P P G+ D + GP G
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1312
Query: 814 ---PAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAG------TVKELPKGPEQVPVPDPA 864
P GPP G P AA A+ R G+K A A T P+GP P P+
Sbjct: 1313 EAGPPGPP--GKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1370
Query: 865 REAGGP--EERLAEE--------------FPGQSQDVTGGSQDRKKPG------------ 896
R GP E+ L PG D G ++ PG
Sbjct: 1371 RGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD-PGSKGEKGHPGLIGLIGPPGEQG 1429
Query: 897 ----KEVAATGTSILKEANWLVAGPGAETGDPR-------MKPKQVSRDLGLAAD----- 940
+ + T S + + + GP G P PK G A
Sbjct: 1430 EKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG 1489
Query: 941 LPG-----GAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDHGGHLE 984
LPG G G QP +L + R ++G Q + LD+ +E
Sbjct: 1490 LPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGME 1538
Score = 51.6 bits (122), Expect = 4e-06
Identities = 148/595 (24%), Positives = 196/595 (32%), Gaps = 100/595 (16%)
Query: 460 KGPVDVPGRE--DGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVP 517
+GP PG + G + P +R QG PVG PP P P
Sbjct: 855 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--------------P 900
Query: 518 EENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEP--EQGEVGKR--PGQAQALEEAGDL 573
++ P G QG+ PP P Q P E G +G+R PG
Sbjct: 901 GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG-------- 952
Query: 574 PEDPQKVPEADGQPAVQPAKEDLGP-------GDRGLHPRPQAVLSEQQNGL-AVGGGEK 625
P Q +P A G+ + AK D GP G GL P + GL G
Sbjct: 953 PPGEQGLPGAAGK---EGAKGDPGPQGISGKDGPAGLRGFPG------ERGLPGAQGAPG 1003
Query: 626 AKGGPPPGNAAGDTGQPAEDSDHGGKPP--LPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
KGG P G G P E G P LP PGP PP P ++ G Q
Sbjct: 1004 LKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR---PGPQGPPGPAGEKGAPGEKGPQG 1060
Query: 684 ASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEED 743
+ + L + + + + +K + ++ +
Sbjct: 1061 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Query: 744 KPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSL 803
P EPG PRGQ+ G+ + P P P+ G P P + +
Sbjct: 1121 APGIAGGDGEPG---PRGQQGMFGQKGDEGARGFPGPPGPI--GLQGLPGPPGEKGENG- 1174
Query: 804 EHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKEL-PKG-PEQVPVP 861
GP+G P GPP PR Q P + G+V + KG P + P
Sbjct: 1175 --DVGPMG--PPGPPG------PRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1224
Query: 862 DPAREA--GGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGA 919
P EA GGP+ E+ G + PG + GP
Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN-----------PGPVG 1273
Query: 920 ETGDPRM--KPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVISDGEQG--GQQGH 975
GDP +P +D G+ D G +G QP GE G G G
Sbjct: 1274 FPGDPGPPGEPGPAGQD-GVGGD--KGEDGDPGQPGP--------PGPSGEAGPPGPPGK 1322
Query: 976 RLDHG-GHLEMRKARGGDHVPVSHEQPRGGE-DAAVQEPRQRPEPELGLKRAVPG 1028
R G E R+ G E P G Q P +P PE GL R +PG
Sbjct: 1323 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE-GL-RGIPG 1375
Score = 44.3 bits (103), Expect = 7e-04
Identities = 68/248 (27%), Positives = 82/248 (33%), Gaps = 38/248 (15%)
Query: 445 PKLPKEREELEQAQIKGPVDVPGRE--------DGKEAPEEAQLDRPGQGIAVPVGEAHR 496
P P E+ E GP PG DG + P + G G GEA
Sbjct: 1164 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1223
Query: 497 HEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEP---- 552
PP + V +R E PP A G G PP D + P
Sbjct: 1224 PGPP--GEAGVGGPKGERGEKGEAGPPG------AAGPPGAKGPPGDDGPKGNPGPVGFP 1275
Query: 553 -EQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVL 611
+ G G+ PG A GD ED P G P P+ E PG G P A
Sbjct: 1276 GDPGPPGE-PGPAGQDGVGGDKGEDGD--PGQPGPPG--PSGEAGPPGPPGKRGPPGAAG 1330
Query: 612 SEQQNGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHG--------GKPPLPAEKP 659
+E + G GE GPP P G G+P + G G P +
Sbjct: 1331 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1390
Query: 660 APGPGLPP 667
PGP PP
Sbjct: 1391 PPGPMGPP 1398
Score = 44.3 bits (103), Expect = 7e-04
Identities = 79/284 (27%), Positives = 98/284 (34%), Gaps = 41/284 (14%)
Query: 408 EAPGGRLGEAEGL-MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVP 466
+ P G +G G+ K E P E G PK ER E +A G P
Sbjct: 1200 QGPPGSVGSVGGVGEKGEPGEAGNPGPP---GEAGVGGPK--GERGEKGEAGPPGAAGPP 1254
Query: 467 GRED--GKEAPEEAQLDRPGQGIAVPVGEAHRHEP-PVPHDKVVVDEGQDREVPEENKPP 523
G + G + P+ PG + P EP P D V D+G+D + P + PP
Sbjct: 1255 GAKGPPGDDGPK----GNPGP-VGFPGDPGPPGEPGPAGQDGVGGDKGEDGD-PGQPGPP 1308
Query: 524 SRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDL----PEDPQK 579
PG G+ PP E QGE G + G+A A G P+ P
Sbjct: 1309 GPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAK-GEAGAEGPPGKTGPVGPQGPAG 1363
Query: 580 VPEADGQPAVQ-PAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKA-KGGP------- 630
P +G + P E PG G P + GL G K KG P
Sbjct: 1364 KPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1423
Query: 631 PPGNAA--------GDTGQPAEDSDHGGKPPLPAEKPAPGPGLP 666
PPG G G P D G P P PGLP
Sbjct: 1424 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1467
Score = 43.9 bits (102), Expect = 9e-04
Identities = 133/546 (24%), Positives = 180/546 (32%), Gaps = 111/546 (20%)
Query: 544 DSEREKQEPEQGEVGKRPGQAQALEEAGDLPE-DPQKVPEADGQPAVQPAKEDLGPGDRG 602
DS+R+ E E + G+ L GDL E D + E + +P P E+ GPG
Sbjct: 310 DSQRKNSEDTLYENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKPT-SPPNEEFGPGV-- 366
Query: 603 LHPRPQAVLSEQQNGLAVGGGEKAKGGP-----------PPGNAA-----------GDTG 640
P + NG G + KG P PPG A G TG
Sbjct: 367 --PAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTG 424
Query: 641 QPAEDSDHG--GKPPLPAEKPAPGPGLPPEPREQRDVE-RAGGNQAASQLEEAGRAEMLD 697
P + D G G+P LP GLP P + R GG+ + A A+
Sbjct: 425 PPGDPGDRGPPGRPGLPG-----ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA-- 477
Query: 698 HAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVE-------- 749
+LQ + + + V + + PR V+
Sbjct: 478 -QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 536
Query: 750 --VHQEPGAAVPRGQEA-PEGKARETVENLPPLPLDPVLRA---PGGRPAPSQDLNQRSL 803
PGA RG P K + LP LP D R P G P P D R
Sbjct: 537 PGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGE 596
Query: 804 EHSEGPVGRDPAGPPDG--GPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVP 861
+ GP G P G GP P A G D P G + GP+ P P
Sbjct: 597 DGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG-VDGPPGPKGNM-----GPQGEPGP 650
Query: 862 DPAREAGGPEERLAEEFPGQSQDV--TGGSQDRKKPGKEVAATGTSILKEANWLVAGPGA 919
+ GP + PG + G + KPG L PGA
Sbjct: 651 PGQQGNPGP-----QGLPGPQGPIGPPGEKGPQGKPG----------------LAGLPGA 689
Query: 920 ETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVI--SDGEQG--GQQGH 975
+ G P K+ A PG PQ + P R + +DG +G G +G
Sbjct: 690 D-GPPGHPGKEGQSGEKGALGPPG--------PQGPIGYPGPRGVKGADGVRGLKGSKGE 740
Query: 976 RLDHG-----GHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPELGLKRAVPGGQ 1030
+ + G G + ++ GD V PRG + + R P + G P GQ
Sbjct: 741 KGEDGFPGFKGDMGLK----GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG-----PSGQ 791
Query: 1031 RPDNAK 1036
+ K
Sbjct: 792 AGEKGK 797
Score = 42.4 bits (98), Expect = 0.002
Identities = 66/251 (26%), Positives = 83/251 (33%), Gaps = 33/251 (13%)
Query: 459 IKGPVDVPGRE--DGKEAPEEAQL------DRPGQGIAVPVGEAHRHEPPVPHDKVVVDE 510
++GPV PG DG+ P Q D +G P G P P ++
Sbjct: 1115 LQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG----EK 1170
Query: 511 GQDREVPEENKP-PSRHAGGKAP-GVQGQMAPP----LPDSEREKQEPEQGEVGKRPGQA 564
G++ +V P P G + P G G PP EK EP + PG+A
Sbjct: 1171 GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1230
Query: 565 QALEEAGDLPEDPQKVPE-ADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGG 623
G+ E + P A G P + PGD G P V G
Sbjct: 1231 GVGGPKGERGEKGEAGPPGAAGPPGAKGP-----PGDDGPKGNPGPV--------GFPGD 1277
Query: 624 EKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQA 683
G P P G G ED D G+P P GP PP R A G Q
Sbjct: 1278 PGPPGEPGPAGQDGVGGDKGEDGD-PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1336
Query: 684 ASQLEEAGRAE 694
+ AE
Sbjct: 1337 EKGAKGEAGAE 1347
Score = 40.0 bits (92), Expect = 0.012
Identities = 144/625 (23%), Positives = 201/625 (32%), Gaps = 111/625 (17%)
Query: 462 PVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENK 521
P P E G P E + GE + P VV+ G E P
Sbjct: 354 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPA-----VVEPGMLVEGPPGPA 408
Query: 522 PPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVP 581
P+ G PG+QG PP +R G G RPG L A LP P +
Sbjct: 409 GPAGIMG--PPGLQGPTGPPGDPGDR-------GPPG-RPG----LPGADGLPGPPGTML 454
Query: 582 EADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKA-KGGPPPGNAAGDTG 640
+ +K GP + QA+L + + L G G P P G +G
Sbjct: 455 MLPFRYGGDGSK---GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSG 511
Query: 641 QPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAV 700
E D G + P + P PGP P R R G + E G
Sbjct: 512 AKGESGDPGPQGPRGVQGP-PGPTGKPGKR-----GRPGADGGRGMPGEPG--------- 556
Query: 701 LLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPR 760
+ R D L ++ H+ ++ + P + E G PR
Sbjct: 557 ---------AKGDRGFDGLPGLPG--DKGHR--GERGPQGPPGPPGDDGMRGEDGEIGPR 603
Query: 761 GQEAPEG-KARETVENLPPLPLDPVLRAPGGRPAPSQDLNQR------SLEHSEGPVG-- 811
G G + P P P + G P P ++ + + + GP G
Sbjct: 604 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLP 663
Query: 812 --RDPAGPP-DGGPDTEPRAAQAKLRDGQ-----KDAAPRAAGTV-KELPKGPEQVPVPD 862
+ P GPP + GP +P A DG K+ G + P+GP P P
Sbjct: 664 GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 723
Query: 863 PAREA-------GGPEERLAEEFPG-------------------QSQDVTGGSQDRKKPG 896
+ A G E+ + FPG + +D G + R P
Sbjct: 724 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPT 783
Query: 897 KEVAATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGL-AADLPGGAEGAAAQP-QA 954
+ +G + K + PG R PK + G A+ GA G A +P
Sbjct: 784 GDPGPSGQAGEKGK---LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 840
Query: 955 VLRQPELRVISDGEQG--GQQGHRLDHGGH----LEMRKARGGDHVPVSHEQPRG----- 1003
R P S G +G G+ G + GG + G PV P+G
Sbjct: 841 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPP 900
Query: 1004 GEDAAVQEPRQRPEPELGLKRAVPG 1028
G+D P QR E K PG
Sbjct: 901 GKDGLPGHPGQRGETGFQGKTGPPG 925
Score = 38.9 bits (89), Expect = 0.028
Identities = 115/461 (24%), Positives = 151/461 (32%), Gaps = 97/461 (21%)
Query: 526 HAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAGDLPEDPQKVPEA 583
H G + P QG PP D R E GE+G R PG+A G P+ P A
Sbjct: 575 HRGERGP--QGPPGPPGDDGMRG----EDGEIGPRGLPGEAGPRGLLG-----PRGTPGA 623
Query: 584 DGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPA 643
GQP + A D PG +G G + + GPP G G P
Sbjct: 624 PGQPGM--AGVDGPPGPKG------------------NMGPQGEPGPP-----GQQGNPG 658
Query: 644 EDSDHGGKPPL--PAEKPAPGP----GLPPEPREQRDVERAGGNQAASQLEEAGRAEMLD 697
G + P+ P EK G GLP + G + L G +
Sbjct: 659 PQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG 718
Query: 698 HAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAA 757
+ V + D L E+ ++ + D K + EV G
Sbjct: 719 YPGPRGV---------KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEV----GQI 765
Query: 758 VPRGQEAPE---GKARETVE-------------NLPPLPLDPVLRAPGGR------PAPS 795
PRG++ PE G+A T + +P LP P + P G P +
Sbjct: 766 GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN 825
Query: 796 QDLNQRSLEHSEGPVG-RDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKG 854
+ R + GP G R P GP P D P G + P+G
Sbjct: 826 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG--ERGPQG 883
Query: 855 PE-QVPVPDPAREAGGPEERLAEEFPGQSQDVTG--GSQDRKKPGKEVAATGTSILKEAN 911
P+ V P P G P + PGQ + TG G PG V G +
Sbjct: 884 PQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE-TGFQGKTGPPGPGGVVGPQGPT------ 936
Query: 912 WLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQP 952
GP E G P P + GL G EGA P
Sbjct: 937 -GETGPIGERGHP--GPPGPPGEQGLPG--AAGKEGAKGDP 972
Score = 34.3 bits (77), Expect = 0.68
Identities = 63/240 (26%), Positives = 85/240 (35%), Gaps = 46/240 (19%)
Query: 461 GPVDVPGREDGKEAPEEAQLDRPG-QGIAVPVGEAHRHEPPVPHDKVVVD-----EGQDR 514
GP PG+E ++ E+ L PG QG P+G P P D +G
Sbjct: 691 GPPGHPGKEG--QSGEKGALGPPGPQG---PIGY------PGPRGVKGADGVRGLKGSKG 739
Query: 515 EVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAGD 572
E E+ P + G G +G++ P E + P+ G G PG + E G
Sbjct: 740 EKGEDGFPGFKGDMG-LKGDRGEVGQIGPRGEDGPEGPK-GRAGPTGDPGPSGQAGEKGK 797
Query: 573 LPEDPQKVPEADGQPAVQPAKEDLG----------PGDRGLHPRPQAVLSEQQNGLAVGG 622
L VP G P Q K G G RG+ +P G
Sbjct: 798 LG-----VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSR 852
Query: 623 GEKAKGGPP-PGNAAGDTGQPAEDSDHGGKPP-----LPAEKPAPGP----GLPPEPREQ 672
G + G P P +G G P + G + P P K PGP GLP P ++
Sbjct: 853 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 912
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 55.8 bits (133), Expect = 2e-07
Identities = 101/375 (26%), Positives = 129/375 (34%), Gaps = 49/375 (13%)
Query: 461 GPVDVPGREDGKEAPEEAQLDRPG-QGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEE 519
GP V G P A PG +G+ P G PP P P +
Sbjct: 855 GPQGVKGERGSPGGPGAAGF--PGARGLPGPPGSNGNPGPPGPSGS-----------PGK 901
Query: 520 NKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPE---- 575
+ PP APG G ++ P D+ + ++ G G PG L AG
Sbjct: 902 DGPPGPAGNTGAPGSPG-VSGPKGDAGQPGEKGSPGAQGP-PGAPGPLGIAGITGARGLA 959
Query: 576 DPQKVPEADGQPAVQPAKEDLG-PGDRGLH-----PRPQAVLSEQQNGLAVGGGEKAKGG 629
P +P G P Q K + G PG GL P PQ + GLA GE + G
Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL-----PGLAGTAGEPGRDG 1014
Query: 630 PPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPG-PGLPPEPREQRDVERAGGNQAASQLE 688
P G G P D GGK E +PG PG P P V AG + +
Sbjct: 1015 NP-----GSDGLPGRDGSPGGKGD-RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESG 1068
Query: 689 EAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQV 748
AG A A Q + + + E+ A I+ Q
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDK-GETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQ 1127
Query: 749 EVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEG 808
PG A PRG P G + + P P+ P P P + +R E S G
Sbjct: 1128 GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGP--------PGPRGNRGERGSEGSPG 1179
Query: 809 PVGR-DPAGPPDGGP 822
G+ P GPP G P
Sbjct: 1180 HPGQPGPPGPP-GAP 1193
Score = 49.7 bits (117), Expect = 2e-05
Identities = 153/631 (24%), Positives = 200/631 (31%), Gaps = 151/631 (23%)
Query: 433 PVVAVAEDGRE-KPKLPKEREELEQAQIKGPVDVPGRE--------DGKEAPEEAQLDRP 483
P +DG +P P ER IKGP +PG DG+ E+ + P
Sbjct: 223 PSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG-EKGETGAP 281
Query: 484 G----------QGIAVPVG----EAHRHEPPVP-------HDKVVVDEGQDREVPEENKP 522
G G P+G R P +P +D +GQ P P
Sbjct: 282 GLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ----PGPPGP 337
Query: 523 PSRHAGGKAPGVQGQMAPPLPDSEREKQEP-EQGEVGKRPGQAQALEEAGDLPEDPQKVP 581
P +PG +G++ P S P ++GE G + G A A + P P
Sbjct: 338 PGTAGFPGSPGAKGEVGP--AGSPGSNGAPGQRGEPGPQ-GHAGA--------QGPPGPP 386
Query: 582 EADGQPA----VQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEK----AKGGPPPG 633
+G P + PA PG G P + GL G GE AKG P P
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446
Query: 634 NAAGDTGQPAEDSDHG--GKPPLPAEKPAPG-PGLPPEPREQRDVERAGGNQAASQLEEA 690
G+ G P G GK P E A G PG E AG N + A
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 506
Query: 691 GRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEV 750
G E+ + ++ P +
Sbjct: 507 G----------------------------ERGAPGPAGPRGAAGEPGRDGVPGGPGMRGM 538
Query: 751 HQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPG--GRPAP-SQDLNQRSLEHSE 807
PG G+ P G E+ PP P P PG G P P D
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP-RGQPGVMGFPGPKGNDGAPGKNGERG 597
Query: 808 GPVGRDPAGPPDGGPDTEPRAAQAKLRDG--QKDAAPRAAGTVKELPKGPEQVP-VPDPA 864
GP G P GPP +T P+ G + D P P+G + +P P
Sbjct: 598 GPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPG-------PQGLQGLPGTGGPP 650
Query: 865 REAGGPEERLAEEFPGQSQD-----VTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGA 919
E G P E PG D GG D PG+ GP
Sbjct: 651 GENGKPGE------PGPKGDAGAPGAPGGKGDAGAPGER-----------------GPPG 687
Query: 920 ETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQ--PQAVLRQPELRVISDGEQG-----GQ 972
G P ++ G P G +GAA P P L+ + GE+G G
Sbjct: 688 LAGAPGLRG-------GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM-PGERGGLGSPGP 739
Query: 973 QGHRLDHGGHLEMRKARGGDHVPVSHEQPRG 1003
+G + + GG G D VP + PRG
Sbjct: 740 KGDKGEPGG-------PGADGVP-GKDGPRG 762
Score = 45.1 bits (105), Expect = 4e-04
Identities = 67/256 (26%), Positives = 89/256 (34%), Gaps = 44/256 (17%)
Query: 466 PGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQ----DREVPEENK 521
PG + G P Q + G P GE + P P D P E
Sbjct: 625 PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684
Query: 522 PPSRHAGGKAPGVQGQMAPPLPDSEREKQEPE--QGEVGK-----RPGQAQALEEAGDLP 574
PP AG APG++G PP P+ + P G G PG+ L G
Sbjct: 685 PPGL-AG--APGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKG 741
Query: 575 EDPQKV-PEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVG----------GG 623
+ + P ADG P + GP P P ++ G A G G
Sbjct: 742 DKGEPGGPGADGVPGKDGPRGPTGPIGP---PGPAGQPGDKGEGGAPGLPGIAGPRGSPG 798
Query: 624 EKAKGGPPPGNAAGDTGQPAEDSDHGGK-------------PPLPAEKPA-PGPGLPPEP 669
E+ + GPP AG G P ++ + GGK PP A P GP PP P
Sbjct: 799 ERGETGPP--GPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Query: 670 REQRDVERAGGNQAAS 685
+ + + G A+
Sbjct: 857 QGVKGERGSPGGPGAA 872
Score = 42.7 bits (99), Expect = 0.002
Identities = 58/231 (25%), Positives = 82/231 (35%), Gaps = 20/231 (8%)
Query: 461 GPVDVPGREDGKEAPEEAQLDRPG-QGIAVPVGEAHRHEPPVPHDKVVVD--EGQDREVP 517
GP PG +P PG QG G+A PP P + G+D E
Sbjct: 180 GPPGPPGTSGHPGSPGS-----PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 518 EENKPPSRHAGGKAPGVQGQMA-PPLPDSE-------REKQEPEQGEVGKRPGQAQALEE 569
+P R G PG++G P P + R ++ E G G + E
Sbjct: 235 RPGRPGERGLPGP-PGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN 293
Query: 570 AGDLPEDPQKVPEADGQPAVQPAKEDLG-PGDRGLHPRPQAVLSEQQNGLAVGGGEKAKG 628
P P+ P G+P + A G G RG +P G G AKG
Sbjct: 294 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFP--GSPGAKG 351
Query: 629 GPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAG 679
P + G G P + + G + A+ P PG+ P + ++ AG
Sbjct: 352 EVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Score = 42.7 bits (99), Expect = 0.002
Identities = 72/246 (29%), Positives = 88/246 (35%), Gaps = 55/246 (22%)
Query: 447 LPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKV 506
+P ER L KG PG P + D P +G P+G PP P
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGK---DGP-RGPTGPIG------PPGP---- 772
Query: 507 VVDEGQDREVPEENKPPSRHAGGK--APGVQGQMAPP----LPDSEREKQEP----EQGE 556
GQ + E P G +PG +G+ PP P + + EP E+G
Sbjct: 773 ---AGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGA 829
Query: 557 VGKR-----PGQAQALEEAGDL-PEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAV 610
G++ PG A +G P PQ V G P A PG RGL P P
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF--PGARGL-PGPPG- 885
Query: 611 LSEQQNGLAVGGGEKAKGGPP--------PGNAA-----GDTGQPAEDSDHGGKPPLPAE 657
S G G K GPP PG+ GD GQP E G + P
Sbjct: 886 -SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP---- 940
Query: 658 KPAPGP 663
APGP
Sbjct: 941 PGAPGP 946
Score = 41.2 bits (95), Expect = 0.006
Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 24/165 (14%)
Query: 517 PEENKPPSRHAGGKAP-GVQGQMAPP-LPDSEREKQEPEQGEVGKRPGQAQALEEAGDLP 574
P+ P+R G+ P G +G PP +P + P Q PG E P
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESC---P 145
Query: 575 EDPQKV-PEAD--------------GQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLA 619
PQ P+ D G P PA PG G P + S G
Sbjct: 146 TGPQNYSPQYDSYDVKSGVAVGGLAGYPG--PAGPPGPPGPPGTSGHPGSPGSPGYQGPP 203
Query: 620 VGGGEKAKGGPP-PGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGP 663
G+ GPP P A G +G +D + G+P P E+ PGP
Sbjct: 204 GEPGQAGPSGPPGPPGAIGPSGPAGKDGE-SGRPGRPGERGLPGP 247
Score = 40.8 bits (94), Expect = 0.007
Identities = 148/602 (24%), Positives = 185/602 (30%), Gaps = 137/602 (22%)
Query: 407 EEAPGGRLGEAEGLMKVEAARLSAQDPVVAVAEDGREKPK-------LPKEREELEQAQI 459
E P G GEA G+ V A+ EDG++ LP E
Sbjct: 442 EPGPRGERGEA-GIPGVPGAK----------GEDGKDGSPGEPGANGLPGAAGERGAPGF 490
Query: 460 KGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEE 519
+GP P G++ P +R G A P G A EP D V G R +P
Sbjct: 491 RGPAG-PNGIPGEKGPAG---ERGAPGPAGPRGAAG--EPG--RDGVPGGPGM-RGMPGS 541
Query: 520 NKPPSRHAGGKAPGVQGQMA---PPLPDSEREKQEPE--QGEVGKRPGQAQALEEAGDLP 574
P PG QG+ PP P R + G G + E G
Sbjct: 542 PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG 601
Query: 575 EDPQKVPEADGQPAVQPAKEDLGPG-DRGLH--PRPQAVLSEQQNGLAVGGGEKAKGGPP 631
PQ P +G+ Q GPG D+G P PQ + G GGPP
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQ-----------GLPGTGGPP 650
Query: 632 PGNAAGDTGQPAEDSDHG--------GKPPLPAEKPAPG----PGL-----PPEPREQRD 674
N G G+P D G G P E+ PG PGL PP P
Sbjct: 651 GEN--GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE---- 704
Query: 675 VERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIH 734
GG AA G A L + + +
Sbjct: 705 ----GGKGAAGPPGPPGAAGTPG-------------------------LQGMPGERGGLG 735
Query: 735 QQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPL-DPVLRAPGGRP- 792
+ ++ +P PG PRG P G PP P P + GG P
Sbjct: 736 SPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG---------PPGPAGQPGDKGEGGAPG 786
Query: 793 -----APSQDLNQRSLEHSEGPVGRDPAGPPDGGP--DTEPRAAQAKLRDGQKDAAPRAA 845
P +R GP G A +G P E A K G A
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPG 846
Query: 846 GTVKELPKGPEQVP----VPDPAREAGGPEERLAEEFPGQSQDV----TGGSQDRKKPGK 897
G+ P GP+ V P AG P R PG + + GS + P
Sbjct: 847 GSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906
Query: 898 EVAATGTSILKEANWLVAGPGAETGDPRMK-------PKQVSRDLGLAADLPGGAEGAAA 950
TG + V+GP + G P K P LG+A GA G A
Sbjct: 907 PAGNTGA----PGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT--GARGLAG 960
Query: 951 QP 952
P
Sbjct: 961 PP 962
Score = 38.5 bits (88), Expect = 0.036
Identities = 66/250 (26%), Positives = 81/250 (32%), Gaps = 47/250 (18%)
Query: 445 PKLPKEREELEQAQIKGPVDVPGRE--DGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVP 502
P +P R +KG PG G+ P Q G+A GE R P
Sbjct: 962 PGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQ---GLPGLAGTAGEPGRDGNP-- 1016
Query: 503 HDKVVVDEGQDREVPEENKPPSRHAGGK-----APGVQGQMAPPLPDSEREKQEPEQGEV 557
G D + P + G+ APG G PP P K ++GE
Sbjct: 1017 --------GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG-DRGES 1067
Query: 558 GKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGP-GDRGLHPRPQAVLSEQQN 616
G G A A AG + G P Q + D G G+RG A +
Sbjct: 1068 GPA-GPAGAPGPAG-----------SRGAPGPQGPRGDKGETGERG------AAGIKGHR 1109
Query: 617 GLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG-----GKPPLPAEKPAPGPGLPPEPRE 671
G G A G P P G G P G G P PGP PP PR
Sbjct: 1110 GFP--GNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167
Query: 672 QRDVERAGGN 681
R + G+
Sbjct: 1168 NRGERGSEGS 1177
Score = 35.8 bits (81), Expect = 0.23
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 21/158 (13%)
Query: 754 PGAAVPRGQEAPEGKARETV---------ENLPPLPLD-PVLRAPGGRPAPSQDLNQRSL 803
PG PRG P+G E+ E PP P P L G P +D N S
Sbjct: 962 PGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG--RDGNPGS- 1018
Query: 804 EHSEGPVGRD--PAGPPDGGPDTEPRAAQAKLRDGQKDA---APRAAGTVKELPKGPEQV 858
+G GRD P G D G + P A A G A ++ + P GP
Sbjct: 1019 ---DGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Query: 859 PVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPG 896
P P +R A GP+ ++ + G R PG
Sbjct: 1076 PGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG 1113
Score = 35.0 bits (79), Expect = 0.40
Identities = 56/214 (26%), Positives = 74/214 (34%), Gaps = 30/214 (14%)
Query: 459 IKGPVDVPGRED--------GKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDE 510
+ G PGR+ G++ + DR G G PP P V
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGP----VGPA 1058
Query: 511 GQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEA 570
G+ + E P+ AG APG G P P R ++GE G+R A ++
Sbjct: 1059 GKSGDRGESG--PAGPAG--APGPAGSRGAPGPQGPRG----DKGETGERG--AAGIKGH 1108
Query: 571 GDLPEDPQKVPEADGQPAVQPAKEDLG-PGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGG 629
P +P A G P + +G PG G PR S G G
Sbjct: 1109 RGFPGNPG----APGSPGPAGQQGAIGSPGPAG--PRGPVGPSGPPGKDGTSGHPGPIGP 1162
Query: 630 PPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGP 663
P P G+ G H G+P P APGP
Sbjct: 1163 PGPRGNRGERGSEGSPG-HPGQPGPPGPPGAPGP 1195
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 55.5 bits (132), Expect = 3e-07
Identities = 71/237 (29%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 461 GPVDVPGREDGK----EAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREV 516
GP +PG + + P+ + ++ QG P G+ + P+ + D+G +
Sbjct: 207 GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG----L 262
Query: 517 PEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAG--D 572
P + PP PG++G PP P + ++ EQGE GKR PG+ + G
Sbjct: 263 PGDRGPPG------PPGIRG---PPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPG 313
Query: 573 LPEDPQKVPEADGQPAVQPAKEDLG-PGDRGL-HPRPQA--VLSEQQN-GLAVGGGEKAK 627
LP DP P G+ + K D G PG GL PRP + E+ N GL GEK +
Sbjct: 314 LPGDP-GYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 628 GG-----------PPPGNAA----GDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEP 669
G PPG A G G P E G + P P P PGL +P
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP-PGLDGQP 428
Score = 43.1 bits (100), Expect = 0.001
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 533 GVQGQMAPP-LPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQP 591
GV GQ P LP + +K +P +G PG E G +P G P ++
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGL-PGLPGPKGEPG--------LPGYPGNPGIKG 1098
Query: 592 AKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP-----PPGNAA--GDTGQPAE 644
+ D PG GL P A + Q GL G GP PPGN G+ G P
Sbjct: 1099 SVGD--PGLPGLPGTPGA---KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPG-PVG 1152
Query: 645 DSDHGGKPPLPAEKPAPGPGLPPEPREQR 673
H G+P P EK PG P P Q+
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Score = 41.6 bits (96), Expect = 0.004
Identities = 71/244 (29%), Positives = 85/244 (34%), Gaps = 44/244 (18%)
Query: 459 IKGPVDVPGRED--GKEAPE-----EAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEG 511
I GP PG G E P PG + P G P +P K +
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGP-----PGLPGFKGALGPK 774
Query: 512 QDREVPEENKPPSRHAGGKAPGVQGQ---------MAPP-LPDSEREKQEPEQGEVGK-- 559
DR P PP R PG +G M PP LP + G G
Sbjct: 775 GDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIG 834
Query: 560 RPGQAQALEEAGDLPEDPQKVPEADGQ---PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQ 615
+PG E GD VP G+ P + A +G PG GL + A
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGA------ 888
Query: 616 NGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHG--GKPPLP---AEKPAPG-PGL 665
+G GE GPP P G +G P D G G+P LP EK + G PGL
Sbjct: 889 SGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 666 PPEP 669
P P
Sbjct: 949 PGPP 952
Score = 40.0 bits (92), Expect = 0.012
Identities = 58/225 (25%), Positives = 78/225 (34%), Gaps = 44/225 (19%)
Query: 447 LPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKV 506
LP +R I+GP PG E G E+ + PG+ P + +P +P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKG----EKGEQGEPGKR-GKPGKDGENGQPGIP---- 312
Query: 507 VVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQA 566
+P + P G +G PP P G V RPG
Sbjct: 313 --------GLPGDPGYPGEPGRDGEKGQKGDTGPPGP----------PGLVIPRPGTGIT 354
Query: 567 LEEAGD--LPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQN--GLAVGG 622
+ E G+ LP P + E G P +Q G GL P A + G
Sbjct: 355 IGEKGNIGLPGLPGEKGER-GFPGIQ--------GPPGLPGPPGAAVMGPPGPPGFPGER 405
Query: 623 GEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPP 667
G+K GPP + G G + G P LP GP +PP
Sbjct: 406 GQKGDEGPPGISIPGPPGLDGQP----GAPGLPGPPGPAGPHIPP 446
Score = 39.7 bits (91), Expect = 0.016
Identities = 73/265 (27%), Positives = 92/265 (34%), Gaps = 49/265 (18%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRP-------GQGIAVPVGE 493
G P +P E E GP PG + G + + + D+ G GI+ P G+
Sbjct: 438 GPAGPHIPPSDEICEPGP-PGPPGSPG-DKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 494 AHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKA-PGVQGQMAPPLPDSEREKQEP 552
P P + GQ E K + G K PG+ G AP P K EP
Sbjct: 496 PGLPGLPGPPGSLGFP-GQKGE-----KGQAGATGPKGLPGIPG--APGAPGFPGSKGEP 547
Query: 553 EQGEVGKRPGQAQALEEAGD-----LPEDPQKVPEADGQPAVQPAKEDLG---------- 597
G++ PG E G LP P P DG P + K + G
Sbjct: 548 --GDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGPKGEPGGITFKGERGP 604
Query: 598 PGDRGLHPRPQAVLSEQQNGLAVGG--GEKA----KGGPPPGNAAGDTGQPAEDSDHGGK 651
PG+ GL P + G G GEK G P G G P + GK
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 652 PPLPAEKPAPG-------PGLPPEP 669
P LP G PGLP +P
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQP 689
Score = 37.0 bits (84), Expect = 0.10
Identities = 72/249 (28%), Positives = 89/249 (35%), Gaps = 48/249 (19%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGRED--GKEAPEEAQLDRPGQGIAVPVGEAHRHE 498
G + P P ER GP+ PG GK + G+ P G
Sbjct: 852 GLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG------ 905
Query: 499 PPVP-----HDKVVVDEGQDREVPEENKP-PSRHAGGKA----PGVQGQMAPPLPDSERE 548
PP P V +G D + P P+ G K PG G M P L S+ E
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 549 KQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQ 608
K EP + PG + G LP DP + P GQP + PG G P
Sbjct: 966 KGEPGLPGI---PGVSGPKGYQG-LPGDPGQ-PGLSGQPGL--------PGPPGPKGNP- 1011
Query: 609 AVLSEQQNGLAVGGGEKAKGGPPP-GNAAGDTGQPAEDSDHGGKPPLPAEKPA-PG-PGL 665
GL G+ GPP GD G P G PP P+ P PG PGL
Sbjct: 1012 --------GLP---GQPGLIGPPGLKGTIGDMGFPGPQGVEG--PPGPSGVPGQPGSPGL 1058
Query: 666 PPEPREQRD 674
P + ++ D
Sbjct: 1059 PGQKGDKGD 1067
Score = 35.8 bits (81), Expect = 0.23
Identities = 64/220 (29%), Positives = 78/220 (35%), Gaps = 37/220 (16%)
Query: 483 PGQ-GIAVPVGEAHRHE------PPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAP--- 532
PG G+ P GE H PP P G E P+ N P G P
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPPGS----PGPALEGPKGNPGPQGPPGRPGPTGF 1268
Query: 533 -GVQGQMAPP-LPDS---EREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQP 587
G+ G PP LP + + EK P Q + PG GD + P + G+P
Sbjct: 1269 QGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLK------GD--QGPPGLQGNPGRP 1320
Query: 588 AVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP-PGNAAGDTGQPAEDS 646
+ K D PG G+ P G A GE GPP P G +GQ
Sbjct: 1321 GLNGMKGD--PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIK 1378
Query: 647 DHGGKPPLPAE---KPAPGP----GLPPEPREQRDVERAG 679
G P +P + K PGP GLP D R G
Sbjct: 1379 GDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNG 1418
Score = 33.1 bits (74), Expect = 1.5
Identities = 85/324 (26%), Positives = 108/324 (33%), Gaps = 95/324 (29%)
Query: 445 PKLPKEREELEQAQIKGPVDVPG-------------------REDGKEAPEEAQLDRP-- 483
P LP E+ E I+GP +PG + G E P + P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 484 --GQ----GIAVPVGEAHRHEPP--------------VPHDKVVVDEGQDREVPEENKPP 523
GQ G+ P G A H PP P DK + +G+ ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGL--QGEQGVKGDKGDTC 481
Query: 524 SRHAGGKAPGVQGQMA-PPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDP----- 577
G G GQ P LP P G+ G++ GQA A G LP P
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFP--GQKGEK-GQAGATGPKG-LPGIPGAPGA 537
Query: 578 QKVPEADGQ-------PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQNGLAVGGGE----- 624
P + G+ P ++ K +LG PG GL P + GL GE
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 625 -KAKGGPP--------PGNAA-------GDTGQPAEDSDHG-----GKPPLPAEKPAPG- 662
K + GPP PGN G G E G G+P +P K PG
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 663 -------PGLPPEPREQRDVERAG 679
PGLP P DV G
Sbjct: 658 TITQPGKPGLPGNPGRDGDVGLPG 681
Score = 31.2 bits (69), Expect = 5.7
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 754 PGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRD 813
PG RGQ+ EG ++ P L P G P P+ S E E
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE----PG 454
Query: 814 PAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVP-VPDPAREAGGPEE 872
P GPP G P + + ++ + D GT P G +P +P P G P +
Sbjct: 455 PPGPP-GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQ 513
Query: 873 R 873
+
Sbjct: 514 K 514
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 55.5 bits (132), Expect = 3e-07
Identities = 71/237 (29%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 461 GPVDVPGREDGK----EAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREV 516
GP +PG + + P+ + ++ QG P G+ + P+ + D+G +
Sbjct: 207 GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG----L 262
Query: 517 PEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAG--D 572
P + PP PG++G PP P + ++ EQGE GKR PG+ + G
Sbjct: 263 PGDRGPPG------PPGIRG---PPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPG 313
Query: 573 LPEDPQKVPEADGQPAVQPAKEDLG-PGDRGL-HPRPQA--VLSEQQN-GLAVGGGEKAK 627
LP DP P G+ + K D G PG GL PRP + E+ N GL GEK +
Sbjct: 314 LPGDP-GYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 628 GG-----------PPPGNAA----GDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEP 669
G PPG A G G P E G + P P P PGL +P
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP-PGLDGQP 428
Score = 43.1 bits (100), Expect = 0.001
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 533 GVQGQMAPP-LPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQP 591
GV GQ P LP + +K +P +G PG E G +P G P ++
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGL-PGLPGPKGEPG--------LPGYPGNPGIKG 1098
Query: 592 AKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP-----PPGNAA--GDTGQPAE 644
+ D PG GL P A + Q GL G GP PPGN G+ G P
Sbjct: 1099 SVGD--PGLPGLPGTPGA---KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPG-PVG 1152
Query: 645 DSDHGGKPPLPAEKPAPGPGLPPEPREQR 673
H G+P P EK PG P P Q+
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Score = 41.6 bits (96), Expect = 0.004
Identities = 71/244 (29%), Positives = 85/244 (34%), Gaps = 44/244 (18%)
Query: 459 IKGPVDVPGRED--GKEAPE-----EAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEG 511
I GP PG G E P PG + P G P +P K +
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGP-----PGLPGFKGALGPK 774
Query: 512 QDREVPEENKPPSRHAGGKAPGVQGQ---------MAPP-LPDSEREKQEPEQGEVGK-- 559
DR P PP R PG +G M PP LP + G G
Sbjct: 775 GDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIG 834
Query: 560 RPGQAQALEEAGDLPEDPQKVPEADGQ---PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQ 615
+PG E GD VP G+ P + A +G PG GL + A
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGA------ 888
Query: 616 NGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHG--GKPPLP---AEKPAPG-PGL 665
+G GE GPP P G +G P D G G+P LP EK + G PGL
Sbjct: 889 SGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 666 PPEP 669
P P
Sbjct: 949 PGPP 952
Score = 40.0 bits (92), Expect = 0.012
Identities = 58/225 (25%), Positives = 78/225 (34%), Gaps = 44/225 (19%)
Query: 447 LPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKV 506
LP +R I+GP PG E G E+ + PG+ P + +P +P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKG----EKGEQGEPGKR-GKPGKDGENGQPGIP---- 312
Query: 507 VVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQA 566
+P + P G +G PP P G V RPG
Sbjct: 313 --------GLPGDPGYPGEPGRDGEKGQKGDTGPPGP----------PGLVIPRPGTGIT 354
Query: 567 LEEAGD--LPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQN--GLAVGG 622
+ E G+ LP P + E G P +Q G GL P A + G
Sbjct: 355 IGEKGNIGLPGLPGEKGER-GFPGIQ--------GPPGLPGPPGAAVMGPPGPPGFPGER 405
Query: 623 GEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPP 667
G+K GPP + G G + G P LP GP +PP
Sbjct: 406 GQKGDEGPPGISIPGPPGLDGQP----GAPGLPGPPGPAGPHIPP 446
Score = 39.7 bits (91), Expect = 0.016
Identities = 73/265 (27%), Positives = 92/265 (34%), Gaps = 49/265 (18%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRP-------GQGIAVPVGE 493
G P +P E E GP PG + G + + + D+ G GI+ P G+
Sbjct: 438 GPAGPHIPPSDEICEPGP-PGPPGSPG-DKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 494 AHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKA-PGVQGQMAPPLPDSEREKQEP 552
P P + GQ E K + G K PG+ G AP P K EP
Sbjct: 496 PGLPGLPGPPGSLGFP-GQKGE-----KGQAGATGPKGLPGIPG--APGAPGFPGSKGEP 547
Query: 553 EQGEVGKRPGQAQALEEAGD-----LPEDPQKVPEADGQPAVQPAKEDLG---------- 597
G++ PG E G LP P P DG P + K + G
Sbjct: 548 --GDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGPKGEPGGITFKGERGP 604
Query: 598 PGDRGLHPRPQAVLSEQQNGLAVGG--GEKA----KGGPPPGNAAGDTGQPAEDSDHGGK 651
PG+ GL P + G G GEK G P G G P + GK
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 652 PPLPAEKPAPG-------PGLPPEP 669
P LP G PGLP +P
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQP 689
Score = 37.4 bits (85), Expect = 0.080
Identities = 60/207 (28%), Positives = 73/207 (35%), Gaps = 37/207 (17%)
Query: 499 PPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPP----LPDSEREKQEPEQ 554
P P K + + +P E P PG G+ P +P +K EP Q
Sbjct: 1127 PGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQ 1186
Query: 555 GEVGKR--PGQAQALEEAGD--LP--------EDPQKVPEADGQPAVQ----------PA 592
G PG + GD LP P+ P G P VQ PA
Sbjct: 1187 PGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPA 1246
Query: 593 KEDL--GPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP--PG-----NAAGDTGQPA 643
E PG +G RP E GL GG K + G P PG GD G P
Sbjct: 1247 LEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG 1306
Query: 644 EDSDHGGKPPLPAEKPAPG-PGLPPEP 669
+ G+P L K PG PG+P P
Sbjct: 1307 LQG-NPGRPGLNGMKGDPGLPGVPGFP 1332
Score = 37.4 bits (85), Expect = 0.080
Identities = 64/216 (29%), Positives = 78/216 (36%), Gaps = 35/216 (16%)
Query: 483 PGQ-GIAVPVGEAHRHE------PPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQ 535
PG G+ P GE H PP P G E P+ N P G PG+
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPPGS----PGPALEGPKGNPGPQGPPG--RPGLP 1266
Query: 536 GQMAPP-LPDS---EREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQP 591
G PP LP + + EK P Q + PG GD + P + G+P +
Sbjct: 1267 GPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLK------GD--QGPPGLQGNPGRPGLNG 1318
Query: 592 AKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP-PGNAAGDTGQPAEDSDHGG 650
K D PG G+ P G A GE GPP P G +GQ G
Sbjct: 1319 MKGD--PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAG 1376
Query: 651 KPPLPAE---KPAPGP----GLPPEPREQRDVERAG 679
P +P + K PGP GLP D R G
Sbjct: 1377 PPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNG 1412
Score = 37.0 bits (84), Expect = 0.10
Identities = 72/249 (28%), Positives = 89/249 (35%), Gaps = 48/249 (19%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGRED--GKEAPEEAQLDRPGQGIAVPVGEAHRHE 498
G + P P ER GP+ PG GK + G+ P G
Sbjct: 852 GLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG------ 905
Query: 499 PPVP-----HDKVVVDEGQDREVPEENKP-PSRHAGGKA----PGVQGQMAPPLPDSERE 548
PP P V +G D + P P+ G K PG G M P L S+ E
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 549 KQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQ 608
K EP + PG + G LP DP + P GQP + PG G P
Sbjct: 966 KGEPGLPGI---PGVSGPKGYQG-LPGDPGQ-PGLSGQPGL--------PGPPGPKGNP- 1011
Query: 609 AVLSEQQNGLAVGGGEKAKGGPPP-GNAAGDTGQPAEDSDHGGKPPLPAEKPA-PG-PGL 665
GL G+ GPP GD G P G PP P+ P PG PGL
Sbjct: 1012 --------GLP---GQPGLIGPPGLKGTIGDMGFPGPQGVEG--PPGPSGVPGQPGSPGL 1058
Query: 666 PPEPREQRD 674
P + ++ D
Sbjct: 1059 PGQKGDKGD 1067
Score = 33.1 bits (74), Expect = 1.5
Identities = 85/324 (26%), Positives = 108/324 (33%), Gaps = 95/324 (29%)
Query: 445 PKLPKEREELEQAQIKGPVDVPG-------------------REDGKEAPEEAQLDRP-- 483
P LP E+ E I+GP +PG + G E P + P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 484 --GQ----GIAVPVGEAHRHEPP--------------VPHDKVVVDEGQDREVPEENKPP 523
GQ G+ P G A H PP P DK + +G+ ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGL--QGEQGVKGDKGDTC 481
Query: 524 SRHAGGKAPGVQGQMA-PPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDP----- 577
G G GQ P LP P G+ G++ GQA A G LP P
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFP--GQKGEK-GQAGATGPKG-LPGIPGAPGA 537
Query: 578 QKVPEADGQ-------PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQNGLAVGGGE----- 624
P + G+ P ++ K +LG PG GL P + GL GE
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 625 -KAKGGPP--------PGNAA-------GDTGQPAEDSDHG-----GKPPLPAEKPAPG- 662
K + GPP PGN G G E G G+P +P K PG
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 663 -------PGLPPEPREQRDVERAG 679
PGLP P DV G
Sbjct: 658 TITQPGKPGLPGNPGRDGDVGLPG 681
Score = 31.2 bits (69), Expect = 5.7
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 754 PGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRD 813
PG RGQ+ EG ++ P L P G P P+ S E E
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE----PG 454
Query: 814 PAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVP-VPDPAREAGGPEE 872
P GPP G P + + ++ + D GT P G +P +P P G P +
Sbjct: 455 PPGPP-GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQ 513
Query: 873 R 873
+
Sbjct: 514 K 514
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 55.5 bits (132), Expect = 3e-07
Identities = 71/237 (29%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 461 GPVDVPGREDGK----EAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREV 516
GP +PG + + P+ + ++ QG P G+ + P+ + D+G +
Sbjct: 207 GPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG----L 262
Query: 517 PEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR--PGQAQALEEAG--D 572
P + PP PG++G PP P + ++ EQGE GKR PG+ + G
Sbjct: 263 PGDRGPPG------PPGIRG---PPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPG 313
Query: 573 LPEDPQKVPEADGQPAVQPAKEDLG-PGDRGL-HPRPQA--VLSEQQN-GLAVGGGEKAK 627
LP DP P G+ + K D G PG GL PRP + E+ N GL GEK +
Sbjct: 314 LPGDP-GYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 628 GG-----------PPPGNAA----GDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEP 669
G PPG A G G P E G + P P P PGL +P
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGP-PGLDGQP 428
Score = 43.1 bits (100), Expect = 0.001
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 533 GVQGQMAPP-LPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQP 591
GV GQ P LP + +K +P +G PG E G +P G P ++
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGL-PGLPGPKGEPG--------LPGYPGNPGIKG 1098
Query: 592 AKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP-----PPGNAA--GDTGQPAE 644
+ D PG GL P A + Q GL G GP PPGN G+ G P
Sbjct: 1099 SVGD--PGLPGLPGTPGA---KGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPG-PVG 1152
Query: 645 DSDHGGKPPLPAEKPAPGPGLPPEPREQR 673
H G+P P EK PG P P Q+
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Score = 41.6 bits (96), Expect = 0.004
Identities = 71/244 (29%), Positives = 85/244 (34%), Gaps = 44/244 (18%)
Query: 459 IKGPVDVPGRED--GKEAPE-----EAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEG 511
I GP PG G E P PG + P G P +P K +
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGP-----PGLPGFKGALGPK 774
Query: 512 QDREVPEENKPPSRHAGGKAPGVQGQ---------MAPP-LPDSEREKQEPEQGEVGK-- 559
DR P PP R PG +G M PP LP + G G
Sbjct: 775 GDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIG 834
Query: 560 RPGQAQALEEAGDLPEDPQKVPEADGQ---PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQ 615
+PG E GD VP G+ P + A +G PG GL + A
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGA------ 888
Query: 616 NGLAVGGGEKAKGGPP----PGNAAGDTGQPAEDSDHG--GKPPLP---AEKPAPG-PGL 665
+G GE GPP P G +G P D G G+P LP EK + G PGL
Sbjct: 889 SGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 666 PPEP 669
P P
Sbjct: 949 PGPP 952
Score = 40.0 bits (92), Expect = 0.012
Identities = 58/225 (25%), Positives = 78/225 (34%), Gaps = 44/225 (19%)
Query: 447 LPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKV 506
LP +R I+GP PG E G E+ + PG+ P + +P +P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKG----EKGEQGEPGKR-GKPGKDGENGQPGIP---- 312
Query: 507 VVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQA 566
+P + P G +G PP P G V RPG
Sbjct: 313 --------GLPGDPGYPGEPGRDGEKGQKGDTGPPGP----------PGLVIPRPGTGIT 354
Query: 567 LEEAGD--LPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQN--GLAVGG 622
+ E G+ LP P + E G P +Q G GL P A + G
Sbjct: 355 IGEKGNIGLPGLPGEKGER-GFPGIQ--------GPPGLPGPPGAAVMGPPGPPGFPGER 405
Query: 623 GEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPP 667
G+K GPP + G G + G P LP GP +PP
Sbjct: 406 GQKGDEGPPGISIPGPPGLDGQP----GAPGLPGPPGPAGPHIPP 446
Score = 39.7 bits (91), Expect = 0.016
Identities = 73/265 (27%), Positives = 92/265 (34%), Gaps = 49/265 (18%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRP-------GQGIAVPVGE 493
G P +P E E GP PG + G + + + D+ G GI+ P G+
Sbjct: 438 GPAGPHIPPSDEICEPGP-PGPPGSPG-DKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 494 AHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKA-PGVQGQMAPPLPDSEREKQEP 552
P P + GQ E K + G K PG+ G AP P K EP
Sbjct: 496 PGLPGLPGPPGSLGFP-GQKGE-----KGQAGATGPKGLPGIPG--APGAPGFPGSKGEP 547
Query: 553 EQGEVGKRPGQAQALEEAGD-----LPEDPQKVPEADGQPAVQPAKEDLG---------- 597
G++ PG E G LP P P DG P + K + G
Sbjct: 548 --GDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGPKGEPGGITFKGERGP 604
Query: 598 PGDRGLHPRPQAVLSEQQNGLAVGG--GEKA----KGGPPPGNAAGDTGQPAEDSDHGGK 651
PG+ GL P + G G GEK G P G G P + GK
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 652 PPLPAEKPAPG-------PGLPPEP 669
P LP G PGLP +P
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQP 689
Score = 37.0 bits (84), Expect = 0.10
Identities = 72/249 (28%), Positives = 89/249 (35%), Gaps = 48/249 (19%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGRED--GKEAPEEAQLDRPGQGIAVPVGEAHRHE 498
G + P P ER GP+ PG GK + G+ P G
Sbjct: 852 GLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG------ 905
Query: 499 PPVP-----HDKVVVDEGQDREVPEENKP-PSRHAGGKA----PGVQGQMAPPLPDSERE 548
PP P V +G D + P P+ G K PG G M P L S+ E
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 549 KQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQ 608
K EP + PG + G LP DP + P GQP + PG G P
Sbjct: 966 KGEPGLPGI---PGVSGPKGYQG-LPGDPGQ-PGLSGQPGL--------PGPPGPKGNP- 1011
Query: 609 AVLSEQQNGLAVGGGEKAKGGPPP-GNAAGDTGQPAEDSDHGGKPPLPAEKPA-PG-PGL 665
GL G+ GPP GD G P G PP P+ P PG PGL
Sbjct: 1012 --------GLP---GQPGLIGPPGLKGTIGDMGFPGPQGVEG--PPGPSGVPGQPGSPGL 1058
Query: 666 PPEPREQRD 674
P + ++ D
Sbjct: 1059 PGQKGDKGD 1067
Score = 35.0 bits (79), Expect = 0.40
Identities = 64/237 (27%), Positives = 79/237 (33%), Gaps = 45/237 (18%)
Query: 461 GPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEEN 520
G +PG++ K P + + PG + P GE P P + + D +P
Sbjct: 1054 GSPGLPGQKGDKGDPGISSIGLPG--LPGPKGEPGL--PGYPGNPGIKGSVGDPGLPGLP 1109
Query: 521 KPPSRHAGGKAPGVQGQMAPPLPDS--------------------EREKQEPEQGEVGKR 560
P PG G PP P Q GE GK
Sbjct: 1110 GTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGK- 1168
Query: 561 PGQAQALEEAGDLPEDPQKV---PEADGQPAVQPAKEDLG----PGDRGLHPRPQAVLSE 613
PGQ AG E Q P G P + K D G PG+ GL P P+
Sbjct: 1169 PGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL-PGPKG---- 1223
Query: 614 QQNGLAVGGGEKAKGGPP--PGNAA-GDTGQPAEDSDHGGKPPLPAEKPAPGPGLPP 667
+ G G + GPP PG A G G P G P P + PGP PP
Sbjct: 1224 -EPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQ----GPPGRPGFQGLPGPEGPP 1275
Score = 35.0 bits (79), Expect = 0.40
Identities = 51/174 (29%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 517 PEENKPPSRHAGGKAPGVQGQMAPPLPDS---EREKQEPEQGEVGKRPGQAQALEEAGDL 573
P PP R PG +G P LP + + EK P Q + PG GD
Sbjct: 1254 PGPQGPPGRPGFQGLPGPEGP--PGLPGNGGIKGEKGNPGQPGLPGLPGLK------GD- 1304
Query: 574 PEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPP-P 632
+ P + G+P + K D PG G+ P G A GE GPP P
Sbjct: 1305 -QGPPGLQGNPGRPGLNGMKGD--PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGP 1361
Query: 633 GNAAGDTGQPAEDSDHGGKPPLPAE---KPAPGP----GLPPEPREQRDVERAG 679
G +GQ G P +P + K PGP GLP D R G
Sbjct: 1362 PGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNG 1415
Score = 33.1 bits (74), Expect = 1.5
Identities = 85/324 (26%), Positives = 108/324 (33%), Gaps = 95/324 (29%)
Query: 445 PKLPKEREELEQAQIKGPVDVPG-------------------REDGKEAPEEAQLDRP-- 483
P LP E+ E I+GP +PG + G E P + P
Sbjct: 364 PGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 484 --GQ----GIAVPVGEAHRHEPP--------------VPHDKVVVDEGQDREVPEENKPP 523
GQ G+ P G A H PP P DK + +G+ ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGL--QGEQGVKGDKGDTC 481
Query: 524 SRHAGGKAPGVQGQMA-PPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDP----- 577
G G GQ P LP P G+ G++ GQA A G LP P
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFP--GQKGEK-GQAGATGPKG-LPGIPGAPGA 537
Query: 578 QKVPEADGQ-------PAVQPAKEDLG-PGDRGLHPRPQAVLSEQQNGLAVGGGE----- 624
P + G+ P ++ K +LG PG GL P + GL GE
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 625 -KAKGGPP--------PGNAA-------GDTGQPAEDSDHG-----GKPPLPAEKPAPG- 662
K + GPP PGN G G E G G+P +P K PG
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQ 657
Query: 663 -------PGLPPEPREQRDVERAG 679
PGLP P DV G
Sbjct: 658 TITQPGKPGLPGNPGRDGDVGLPG 681
Score = 31.2 bits (69), Expect = 5.7
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 754 PGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRD 813
PG RGQ+ EG ++ P L P G P P+ S E E
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE----PG 454
Query: 814 PAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVP-VPDPAREAGGPEE 872
P GPP G P + + ++ + D GT P G +P +P P G P +
Sbjct: 455 PPGPP-GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQ 513
Query: 873 R 873
+
Sbjct: 514 K 514
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 55.5 bits (132), Expect = 3e-07
Identities = 61/260 (23%), Positives = 82/260 (31%), Gaps = 47/260 (18%)
Query: 441 GREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPP 500
G P PK+ + V PGR + + A + Q + +G+ H P
Sbjct: 572 GDGSPPKPKD-------PVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGP 624
Query: 501 VPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPL-PDSEREKQEPEQGEVGK 559
PH + P+ PP H GG++ Q P L P P G+
Sbjct: 625 SPHTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQ 684
Query: 560 RPGQAQALEEAG------------DLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRP 607
PGQ A + P P P P + GP P P
Sbjct: 685 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGP------PNP 738
Query: 608 QAVLSEQQNGLAVGG---------------GEKAKGGPPPGNAAGDTGQPAEDSDHGGKP 652
A+ SE +GL G++ P P AG G P H G
Sbjct: 739 MALPSE--HGLEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAG--GNPETAQPHAGTL 794
Query: 653 PLPAEKPAPG--PGLPPEPR 670
P P P P P +PP P+
Sbjct: 795 PRPRPVPKPRNRPSVPPPPQ 814
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,879,646
Number of Sequences: 37866
Number of extensions: 3306159
Number of successful extensions: 22004
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 1320
Number of HSP's that attempted gapping in prelim test: 14719
Number of HSP's gapped (non-prelim): 6621
length of query: 1119
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1006
effective length of database: 13,968,660
effective search space: 14052471960
effective search space used: 14052471960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.