Guide to the Human Genome
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Name: SLC38A10 Sequence: fasta or formatted (780aa) NCBI GI: 20070376
Description:

solute carrier family 38, member 10 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [1119aa] solute carrier family 38, member 10 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         71           4
 C cysteine            1.8         14           1
 D aspartate           3.2         25           1
 E glutamate           6.4         50           2
 F phenylalanine       4.9         38           2
 G glycine            10.3         80           3
 H histidine           1.8         14           1
 I isoleucine          3.3         26           1
 K lysine              4.0         31           2
 L leucine            10.1         79           3
 M methionine          3.5         27           2
 N asparagine          1.9         15           1
 P proline             9.0         70           3
 Q glutamine           5.1         40           3
 R arginine            4.4         34           2
 S serine              7.2         56           2
 T threonine           3.6         28           2
 V valine              8.3         65           3
 W tryptophan          0.8          6           1
 Y tyrosine            1.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 10 isoform b 
SLC38A10              0.878   solute carrier family 38, member 10 isoform a 
SLC38A2               0.065   solute carrier family 38, member 2 
SLC38A3               0.053   solute carrier family 38, member 3 
SLC38A7               0.052   solute carrier family 38, member 7 
SLC38A5               0.050   solute carrier family 38, member 5 
SLC38A6               0.045   solute carrier family 38, member 6 
SLC38A1               0.041   amino acid transporter system A1 
SLC38A1               0.041   amino acid transporter system A1 
SLC38A8               0.040   solute carrier family 38, member 8 
SLC38A11              0.040   solute carrier family 38, member 11 
SLC38A4               0.030   solute carrier family 38, member 4 
SLC38A4               0.030   solute carrier family 38, member 4 
PRB3                  0.028   proline-rich protein BstNI subfamily 3 precursor [H...
PRB2                  0.026   proline-rich protein BstNI subfamily 2 
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RP1L1                 0.025   retinitis pigmentosa 1-like 1 
SLC32A1               0.025   solute carrier family 32, member 1 
PCLO                  0.025   piccolo isoform 2 
PCLO                  0.025   piccolo isoform 1 
COL7A1                0.024   alpha 1 type VII collagen precursor 
SFPQ                  0.022   splicing factor proline/glutamine rich (polypyrimidin...
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL11A1               0.021   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.021   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.021   alpha 1 type XI collagen isoform A preproprotein [Ho...
ARHGAP17              0.021   nadrin isoform 2 
PRB4                  0.021   proline-rich protein BstNI subfamily 4 precursor [Ho...
COL5A2                0.021   alpha 2 type V collagen preproprotein 
COL10A1               0.021   type X collagen alpha 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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