Guide to the Human Genome
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Name: SLC38A7 Sequence: fasta or formatted (462aa) NCBI GI: 8922692
Description:

solute carrier family 38, member 7

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         49           2
 C cysteine            2.6         12           1
 D aspartate           3.2         15           1
 E glutamate           4.3         20           2
 F phenylalanine       5.8         27           1
 G glycine             8.4         39           2
 H histidine           0.4          2           1
 I isoleucine          8.0         37           3
 K lysine              2.6         12           1
 L leucine            10.4         48           3
 M methionine          2.6         12           1
 N asparagine          1.9          9           2
 P proline             4.5         21           1
 Q glutamine           3.2         15           2
 R arginine            3.2         15           4
 S serine              6.1         28           2
 T threonine           6.1         28           2
 V valine             10.4         48           2
 W tryptophan          2.6         12           2
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 7 
SLC38A8               0.349   solute carrier family 38, member 8 
SLC38A6               0.117   solute carrier family 38, member 6 
SLC38A1               0.097   amino acid transporter system A1 
SLC38A1               0.097   amino acid transporter system A1 
SLC38A10              0.089   solute carrier family 38, member 10 isoform a 
SLC38A10              0.089   solute carrier family 38, member 10 isoform b 
SLC38A2               0.089   solute carrier family 38, member 2 
SLC38A5               0.087   solute carrier family 38, member 5 
SLC38A3               0.078   solute carrier family 38, member 3 
SLC38A11              0.062   solute carrier family 38, member 11 
SLC36A2               0.041   solute carrier family 36, member 2 
SLC38A9               0.033   solute carrier family 38, member 9 
SLC36A1               0.032   solute carrier family 36 member 1 
SLC38A4               0.031   solute carrier family 38, member 4 
SLC38A4               0.031   solute carrier family 38, member 4 
SLC36A3               0.026   solute carrier family 36, member 3 isoform 2 
SLC32A1               0.014   solute carrier family 32, member 1 
SLC36A3               0.012   solute carrier family 36, member 3 isoform 1 
LOC100287290          0.010   PREDICTED: hypothetical protein 
LOC100287290          0.010   PREDICTED: hypothetical protein XP_002342446 
PTAFR                 0.008   platelet-activating factor receptor 
TMEM104               0.006   transmembrane protein 104 
PIGW                  0.006   phosphatidylinositol glycan, class W 
GPR35                 0.004   G protein-coupled receptor 35 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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