Guide to the Human Genome
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Name: SLC38A1 Sequence: fasta or formatted (487aa) NCBI GI: 117168275
Description:

amino acid transporter system A1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [487aa] amino acid transporter system A1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         22           2
 C cysteine            2.3         11           1
 D aspartate           3.9         19           2
 E glutamate           3.7         18           2
 F phenylalanine       7.2         35           2
 G glycine             5.7         28           1
 H histidine           1.2          6           1
 I isoleucine          8.2         40           2
 K lysine              5.5         27           3
 L leucine            13.3         65           3
 M methionine          3.1         15           2
 N asparagine          4.7         23           1
 P proline             2.9         14           1
 Q glutamine           2.3         11           1
 R arginine            1.8          9           2
 S serine              9.4         46           4
 T threonine           7.2         35           2
 V valine              8.8         43           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amino acid transporter system A1 
SLC38A1               1.000   amino acid transporter system A1 
SLC38A4               0.478   solute carrier family 38, member 4 
SLC38A4               0.478   solute carrier family 38, member 4 
SLC38A2               0.474   solute carrier family 38, member 2 
SLC38A3               0.441   solute carrier family 38, member 3 
SLC38A5               0.397   solute carrier family 38, member 5 
SLC38A6               0.348   solute carrier family 38, member 6 
SLC38A7               0.094   solute carrier family 38, member 7 
SLC38A8               0.087   solute carrier family 38, member 8 
SLC38A11              0.086   solute carrier family 38, member 11 
SLC38A10              0.068   solute carrier family 38, member 10 isoform a 
SLC38A10              0.068   solute carrier family 38, member 10 isoform b 
SLC32A1               0.042   solute carrier family 32, member 1 
SLC36A4               0.036   solute carrier family 36 (proton/amino acid symporte...
SLC36A2               0.033   solute carrier family 36, member 2 
SLC36A3               0.031   solute carrier family 36, member 3 isoform 2 
SLC36A1               0.027   solute carrier family 36 member 1 
SLC38A9               0.022   solute carrier family 38, member 9 
SLC36A3               0.016   solute carrier family 36, member 3 isoform 1 
ATP7B                 0.009   ATPase, Cu++ transporting, beta polypeptide isoform ...
LOC100289996          0.008   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.008   PREDICTED: hypothetical protein XP_002343076 
FSHR                  0.006   follicle stimulating hormone receptor isoform 1 prec...
FSHR                  0.006   follicle stimulating hormone receptor isoform 2 prec...
OR8B2                 0.005   olfactory receptor, family 8, subfamily B, member 2 ...
TMEM180               0.005   transmembrane protein 180 
GPR52                 0.005   G protein-coupled receptor 52 
SLC9A10               0.004   sperm-specific sodium proton exchanger 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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