Guide to the Human Genome
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Name: SLC38A6 Sequence: fasta or formatted (456aa) NCBI GI: 24429574
Description:

solute carrier family 38, member 6

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         32           2
 C cysteine            1.8          8           1
 D aspartate           2.2         10           2
 E glutamate           3.7         17           2
 F phenylalanine       9.0         41           3
 G glycine             6.1         28           1
 H histidine           1.5          7           1
 I isoleucine          8.8         40           3
 K lysine              4.4         20           2
 L leucine            14.9         68           3
 M methionine          2.9         13           2
 N asparagine          3.3         15           1
 P proline             3.9         18           1
 Q glutamine           2.0          9           2
 R arginine            2.0          9           1
 S serine              8.8         40           2
 T threonine           4.8         22           1
 V valine              7.2         33           3
 W tryptophan          1.5          7           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 6 
SLC38A3               0.424   solute carrier family 38, member 3 
SLC38A2               0.404   solute carrier family 38, member 2 
SLC38A4               0.399   solute carrier family 38, member 4 
SLC38A4               0.399   solute carrier family 38, member 4 
SLC38A5               0.388   solute carrier family 38, member 5 
SLC38A1               0.368   amino acid transporter system A1 
SLC38A1               0.368   amino acid transporter system A1 
SLC38A7               0.120   solute carrier family 38, member 7 
SLC38A8               0.091   solute carrier family 38, member 8 
SLC38A11              0.082   solute carrier family 38, member 11 
SLC38A10              0.079   solute carrier family 38, member 10 isoform a 
SLC38A10              0.079   solute carrier family 38, member 10 isoform b 
SLC36A4               0.063   solute carrier family 36 (proton/amino acid symporte...
SLC38A9               0.048   solute carrier family 38, member 9 
SLC36A2               0.044   solute carrier family 36, member 2 
SLC36A3               0.041   solute carrier family 36, member 3 isoform 2 
SLC32A1               0.041   solute carrier family 32, member 1 
SLC36A1               0.033   solute carrier family 36 member 1 
SLC36A3               0.016   solute carrier family 36, member 3 isoform 1 
TSPAN13               0.009   tetraspan NET-6 
C10orf92              0.008   hypothetical protein LOC54777 
OR4F6                 0.008   olfactory receptor, family 4, subfamily F, member 6 ...
AMPD1                 0.006   adenosine monophosphate deaminase 1 (isoform M) [Homo...
OR6Y1                 0.006   olfactory receptor, family 6, subfamily Y, member 1 ...
CLEC1B                0.005   C-type lectin domain family 1, member B isoform a [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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