Guide to the Human Genome
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Name: SLC32A1 Sequence: fasta or formatted (525aa) NCBI GI: 17999520
Description:

solute carrier family 32, member 1

Referenced in:

GABA and Glycine
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         51           2
 C cysteine            3.2         17           2
 D aspartate           3.4         18           2
 E glutamate           5.0         26           2
 F phenylalanine       6.3         33           2
 G glycine             8.6         45           4
 H histidine           2.3         12           1
 I isoleucine          6.3         33           2
 K lysine              4.2         22           2
 L leucine            12.0         63           2
 M methionine          2.5         13           2
 N asparagine          3.0         16           1
 P proline             4.0         21           2
 Q glutamine           2.7         14           2
 R arginine            3.2         17           1
 S serine              6.5         34           1
 T threonine           3.8         20           1
 V valine              8.4         44           3
 W tryptophan          1.9         10           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 32, member 1 
SLC36A2               0.063   solute carrier family 36, member 2 
SLC36A1               0.051   solute carrier family 36 member 1 
SLC38A5               0.042   solute carrier family 38, member 5 
SLC36A3               0.040   solute carrier family 36, member 3 isoform 1 
SLC36A3               0.040   solute carrier family 36, member 3 isoform 2 
SLC36A4               0.038   solute carrier family 36 (proton/amino acid symporte...
SLC38A1               0.038   amino acid transporter system A1 
SLC38A1               0.038   amino acid transporter system A1 
SLC38A10              0.037   solute carrier family 38, member 10 isoform a 
SLC38A10              0.037   solute carrier family 38, member 10 isoform b 
SLC38A6               0.035   solute carrier family 38, member 6 
SLC38A2               0.029   solute carrier family 38, member 2 
SLC38A8               0.023   solute carrier family 38, member 8 
SLC38A9               0.022   solute carrier family 38, member 9 
SLC38A3               0.020   solute carrier family 38, member 3 
SLC38A4               0.019   solute carrier family 38, member 4 
SLC38A4               0.019   solute carrier family 38, member 4 
SLC38A7               0.013   solute carrier family 38, member 7 
SYNM                  0.006   desmuslin isoform B 
SYNM                  0.006   desmuslin isoform A 
C17orf82              0.006   hypothetical protein LOC388407 
GPR149                0.006   G protein-coupled receptor 149 
COL17A1               0.005   alpha 1 type XVII collagen 
ABCA10                0.005   ATP-binding cassette, sub-family A, member 10 [Homo...
DOCK8                 0.004   dedicator of cytokinesis 8 
TMEM104               0.004   transmembrane protein 104 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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