Guide to the Human Genome
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Name: SLC38A8 Sequence: fasta or formatted (435aa) NCBI GI: 122937281
Description:

solute carrier family 38, member 8

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         40           3
 C cysteine            3.4         15           2
 D aspartate           1.8          8           1
 E glutamate           3.0         13           1
 F phenylalanine       6.0         26           2
 G glycine             8.5         37           2
 H histidine           0.9          4           1
 I isoleucine          6.2         27           2
 K lysine              1.8          8           1
 L leucine            13.8         60           2
 M methionine          3.0         13           1
 N asparagine          0.7          3           1
 P proline             6.2         27           2
 Q glutamine           2.8         12           1
 R arginine            3.2         14           2
 S serine              9.2         40           2
 T threonine           4.6         20           1
 V valine             10.3         45           2
 W tryptophan          2.5         11           1
 Y tyrosine            2.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 8 
SLC38A7               0.370   solute carrier family 38, member 7 
SLC38A1               0.096   amino acid transporter system A1 
SLC38A1               0.096   amino acid transporter system A1 
SLC38A5               0.096   solute carrier family 38, member 5 
SLC38A2               0.096   solute carrier family 38, member 2 
SLC38A6               0.094   solute carrier family 38, member 6 
SLC38A3               0.092   solute carrier family 38, member 3 
SLC38A10              0.073   solute carrier family 38, member 10 isoform a 
SLC38A10              0.073   solute carrier family 38, member 10 isoform b 
SLC38A11              0.057   solute carrier family 38, member 11 
SLC36A3               0.047   solute carrier family 36, member 3 isoform 2 
SLC38A4               0.041   solute carrier family 38, member 4 
SLC38A4               0.041   solute carrier family 38, member 4 
SLC36A2               0.039   solute carrier family 36, member 2 
SLC36A3               0.037   solute carrier family 36, member 3 isoform 1 
SLC36A1               0.037   solute carrier family 36 member 1 
SLC38A9               0.035   solute carrier family 38, member 9 
SLC32A1               0.028   solute carrier family 32, member 1 
TMEM125               0.009   transmembrane protein 125 
OR5P2                 0.009   olfactory receptor, family 5, subfamily P, member 2 ...
SLC35F2               0.008   solute carrier family 35, member F2 
SLC12A3               0.006   solute carrier family 12, member 3 isoform 3 
SLC12A3               0.006   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.006   solute carrier family 12, member 3 isoform 1 
C1orf94               0.005   hypothetical protein LOC84970 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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