Guide to the Human Genome
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Name: C1QTNF1 Sequence: fasta or formatted (199aa) NCBI GI: 38372913
Description:

C1q and tumor necrosis factor related protein 1

Referenced in:

Complement

Other entries for this name:
alt prot [281aa] C1q and tumor necrosis factor related protein 1 isoform 1
alt prot [281aa] C1q and tumor necrosis factor related protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         10           2
 C cysteine            1.0          2           1
 D aspartate           3.5          7           1
 E glutamate           7.0         14           3
 F phenylalanine       5.5         11           2
 G glycine            10.1         20           1
 H histidine           4.0          8           1
 I isoleucine          4.5          9           1
 K lysine              7.0         14           2
 L leucine             6.5         13           1
 M methionine          3.5          7           1
 N asparagine          4.0          8           1
 P proline             3.5          7           1
 Q glutamine           5.0         10           1
 R arginine            4.5          9           1
 S serine              5.5         11           1
 T threonine           6.0         12           1
 V valine              6.0         12           2
 W tryptophan          1.0          2           1
 Y tyrosine            6.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 1 [Hom... 
C1QTNF1               1.000   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               1.000   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF6               0.519   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.519   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF8               0.517   C1q and tumor necrosis factor related protein 8 [Ho...
ADIPOQ                0.207   adiponectin precursor 
C1QTNF7               0.164   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.164   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.164   C1q and tumor necrosis factor related protein 7 iso...
C1QA                  0.156   complement component 1, q subcomponent, A chain precu...
C1QTNF9               0.156   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF9B              0.153   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF2               0.153   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF5               0.153   C1q and tumor necrosis factor related protein 5 prec...
OTOL1                 0.146   hypothetical protein LOC131149 
C1QL3                 0.141   complement component 1, q subcomponent-like 3 
C1QTNF4               0.136   C1q and tumor necrosis factor related protein 4 [Ho...
C1QTNF3               0.128   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.128   C1q and tumor necrosis factor related protein 3 isof...
C1QL1                 0.128   complement component 1, q subcomponent-like 1 
C1QL2                 0.125   complement component 1, q subcomponent-like 2 [Homo...
C1QL4                 0.125   complement component 1, q subcomponent-like 4 
COL10A1               0.120   type X collagen alpha 1 precursor 
C1QB                  0.118   complement component 1, q subcomponent, B chain prec...
C1QC                  0.105   complement component 1, q subcomponent, C chain prec...
C1QC                  0.105   complement component 1, q subcomponent, C chain pre...
COL8A2                0.100   collagen, type VIII, alpha 2 
CAPRIN2               0.095   C1q domain containing 1 isoform 1 
CAPRIN2               0.095   C1q domain containing 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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