Guide to the Human Genome
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Name: C1QTNF1 Sequence: fasta or formatted (281aa) NCBI GI: 38372917
Description:

C1q and tumor necrosis factor related protein 1 isoform 1

Referenced in:

Complement

Other entries for this name:
alt mRNA [281aa] C1q and tumor necrosis factor related protein 1 isoform 1
alt prot [199aa] C1q and tumor necrosis factor related protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         16           2
 C cysteine            2.1          6           2
 D aspartate           3.6         10           1
 E glutamate           8.2         23           3
 F phenylalanine       4.3         12           2
 G glycine            10.0         28           1
 H histidine           3.9         11           1
 I isoleucine          3.2          9           1
 K lysine              5.3         15           2
 L leucine             8.5         24           3
 M methionine          2.8          8           1
 N asparagine          2.8          8           1
 P proline             5.0         14           2
 Q glutamine           6.0         17           2
 R arginine            5.3         15           1
 S serine              6.4         18           1
 T threonine           5.0         14           1
 V valine              5.3         15           2
 W tryptophan          1.1          3           1
 Y tyrosine            5.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 1 isof... 
C1QTNF1               1.000   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.696   C1q and tumor necrosis factor related protein 1 [Hom...
C1QTNF6               0.372   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.372   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF8               0.370   C1q and tumor necrosis factor related protein 8 [Ho...
ADIPOQ                0.144   adiponectin precursor 
C1QTNF7               0.114   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.114   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.114   C1q and tumor necrosis factor related protein 7 iso...
C1QA                  0.110   complement component 1, q subcomponent, A chain precu...
C1QTNF9               0.109   C1q and tumor necrosis factor related protein 9 [Hom...
C1QL3                 0.109   complement component 1, q subcomponent-like 3 
C1QTNF9B              0.107   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF2               0.107   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF5               0.107   C1q and tumor necrosis factor related protein 5 prec...
OTOL1                 0.101   hypothetical protein LOC131149 
C1QTNF3               0.096   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF4               0.094   C1q and tumor necrosis factor related protein 4 [Ho...
C1QTNF3               0.093   C1q and tumor necrosis factor related protein 3 isof...
C1QL1                 0.089   complement component 1, q subcomponent-like 1 
C1QL2                 0.087   complement component 1, q subcomponent-like 2 [Homo...
C1QL4                 0.084   complement component 1, q subcomponent-like 4 
COL10A1               0.084   type X collagen alpha 1 precursor 
C1QB                  0.082   complement component 1, q subcomponent, B chain prec...
C1QC                  0.073   complement component 1, q subcomponent, C chain prec...
C1QC                  0.073   complement component 1, q subcomponent, C chain pre...
COL8A2                0.069   collagen, type VIII, alpha 2 
CAPRIN2               0.066   C1q domain containing 1 isoform 1 
CAPRIN2               0.066   C1q domain containing 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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