Guide to the Human Genome
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Name: SIPA1L1 Sequence: fasta or formatted (1804aa) NCBI GI: 7662126
Description:

signal-induced proliferation-associated 1 like 1

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        103           3
 C cysteine            1.2         21           1
 D aspartate           5.4         98           2
 E glutamate           6.7        120           3
 F phenylalanine       3.6         65           2
 G glycine             5.8        105           3
 H histidine           2.6         47           2
 I isoleucine          3.8         68           2
 K lysine              6.1        110           3
 L leucine             7.6        137           2
 M methionine          2.3         42           1
 N asparagine          4.1         74           3
 P proline             6.2        111           3
 Q glutamine           3.6         65           2
 R arginine            6.5        117           2
 S serine             14.4        260           8
 T threonine           5.7        103           3
 V valine              5.2         94           2
 W tryptophan          0.7         13           1
 Y tyrosine            2.8         51           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   signal-induced proliferation-associated 1 like 1 [Hom... 
SIPA1L2               0.433   signal-induced proliferation-associated 1 like 2 [H...
SIPA1L3               0.387   signal-induced proliferation-associated 1 like 3 [Ho...
SIPA1                 0.172   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.172   signal-induced proliferation-associated protein 1 [...
GARNL4                0.058   GTPase activating Rap/RanGAP domain-like 4 isoform ...
GARNL4                0.058   GTPase activating Rap/RanGAP domain-like 4 isoform ...
RAP1GAP               0.055   RAP1 GTPase activating protein isoform c 
RAP1GAP               0.055   RAP1 GTPase activating protein isoform a 
RAP1GAP               0.055   RAP1 GTPase activating protein isoform b 
GARNL3                0.054   GTPase activating Rap/RanGAP domain-like 3 
GARNL1                0.013   GTPase activating Rap/RanGAP domain-like 1 isoform 2...
GARNL1                0.013   GTPase activating Rap/RanGAP domain-like 1 isoform 1...
C20orf74              0.013   akt substrate AS250 
TSC2                  0.011   tuberous sclerosis 2 isoform 4 
TSC2                  0.011   tuberous sclerosis 2 isoform 1 
TSC2                  0.011   tuberous sclerosis 2 isoform 5 
MUC12                 0.011   PREDICTED: mucin 12 
DSPP                  0.010   dentin sialophosphoprotein preproprotein 
MUC12                 0.010   PREDICTED: mucin 12, cell surface associated 
MUC21                 0.008   mucin 21 
MUC12                 0.007   PREDICTED: mucin 12 
LOC100133714          0.007   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.007   PREDICTED: mucin 12 
MED1                  0.006   mediator complex subunit 1 
LOC100130716          0.006   PREDICTED: similar to mucin 11 
LOC100130716          0.006   PREDICTED: similar to Mucin-12 
MUC16                 0.006   mucin 16 
SHANK1                0.005   SH3 and multiple ankyrin repeat domains 1 
FLG                   0.005   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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