Guide to the Human Genome
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Name: GARNL3 Sequence: fasta or formatted (1013aa) NCBI GI: 207448705
Description:

GTPase activating Rap/RanGAP domain-like 3

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         61           2
 C cysteine            1.8         18           1
 D aspartate           5.3         54           3
 E glutamate           6.6         67           2
 F phenylalanine       4.8         49           2
 G glycine             6.2         63           2
 H histidine           2.7         27           2
 I isoleucine          4.7         48           2
 K lysine              5.8         59           2
 L leucine             9.7         98           3
 M methionine          1.5         15           1
 N asparagine          3.8         39           2
 P proline             6.1         62           2
 Q glutamine           3.8         39           2
 R arginine            6.2         63           3
 S serine             10.0        101           4
 T threonine           4.8         49           2
 V valine              6.9         70           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.4         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTPase activating Rap/RanGAP domain-like 3 
GARNL4                0.098   GTPase activating Rap/RanGAP domain-like 4 isoform ...
GARNL4                0.098   GTPase activating Rap/RanGAP domain-like 4 isoform ...
SIPA1                 0.097   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.097   signal-induced proliferation-associated protein 1 [...
SIPA1L3               0.097   signal-induced proliferation-associated 1 like 3 [Ho...
SIPA1L1               0.096   signal-induced proliferation-associated 1 like 1 [Hom...
SIPA1L2               0.096   signal-induced proliferation-associated 1 like 2 [H...
RAP1GAP               0.093   RAP1 GTPase activating protein isoform c 
RAP1GAP               0.093   RAP1 GTPase activating protein isoform a 
RAP1GAP               0.093   RAP1 GTPase activating protein isoform b 
GARNL1                0.029   GTPase activating Rap/RanGAP domain-like 1 isoform 2...
GARNL1                0.029   GTPase activating Rap/RanGAP domain-like 1 isoform 1...
C20orf74              0.026   akt substrate AS250 
TSC2                  0.021   tuberous sclerosis 2 isoform 4 
TSC2                  0.021   tuberous sclerosis 2 isoform 1 
TSC2                  0.021   tuberous sclerosis 2 isoform 5 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.013   TRAF2 and NCK interacting kinase isoform 1 
MINK1                 0.012   misshapen/NIK-related kinase isoform 4 
MINK1                 0.012   misshapen/NIK-related kinase isoform 2 
MINK1                 0.012   misshapen/NIK-related kinase isoform 3 
MINK1                 0.012   misshapen/NIK-related kinase isoform 1 
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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