Guide to the Human Genome
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Name: GARNL4 Sequence: fasta or formatted (715aa) NCBI GI: 156086740
Description:

GTPase activating Rap/RanGAP domain-like 4 isoform 2

Referenced in:

Ras

Other entries for this name:
alt prot [730aa] GTPase activating Rap/RanGAP domain-like 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         39           3
 C cysteine            1.3          9           2
 D aspartate           4.6         33           2
 E glutamate           8.1         58           5
 F phenylalanine       5.5         39           2
 G glycine             8.3         59           2
 H histidine           2.7         19           1
 I isoleucine          4.2         30           2
 K lysine              6.4         46           2
 L leucine             7.4         53           2
 M methionine          2.1         15           1
 N asparagine          3.5         25           2
 P proline             7.3         52           2
 Q glutamine           3.2         23           2
 R arginine            4.9         35           2
 S serine             11.3         81           4
 T threonine           6.3         45           2
 V valine              5.2         37           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTPase activating Rap/RanGAP domain-like 4 isoform ... 
GARNL4                0.993   GTPase activating Rap/RanGAP domain-like 4 isoform ...
RAP1GAP               0.439   RAP1 GTPase activating protein isoform a 
RAP1GAP               0.423   RAP1 GTPase activating protein isoform c 
RAP1GAP               0.417   RAP1 GTPase activating protein isoform b 
SIPA1L3               0.148   signal-induced proliferation-associated 1 like 3 [Ho...
SIPA1L1               0.145   signal-induced proliferation-associated 1 like 1 [Hom...
SIPA1L2               0.145   signal-induced proliferation-associated 1 like 2 [H...
SIPA1                 0.139   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.139   signal-induced proliferation-associated protein 1 [...
GARNL3                0.139   GTPase activating Rap/RanGAP domain-like 3 
C20orf74              0.037   akt substrate AS250 
GARNL1                0.035   GTPase activating Rap/RanGAP domain-like 1 isoform 2...
GARNL1                0.035   GTPase activating Rap/RanGAP domain-like 1 isoform 1...
TSC2                  0.030   tuberous sclerosis 2 isoform 4 
TSC2                  0.030   tuberous sclerosis 2 isoform 1 
TSC2                  0.030   tuberous sclerosis 2 isoform 5 
TNRC18                0.017   trinucleotide repeat containing 18 
SRRM2                 0.017   splicing coactivator subunit SRm300 
RERE                  0.016   atrophin-1 like protein isoform b 
RERE                  0.016   atrophin-1 like protein isoform a 
RERE                  0.016   atrophin-1 like protein isoform a 
MUC12                 0.016   PREDICTED: mucin 12 
LOC100130716          0.012   PREDICTED: similar to mucin 11 
LOC100130716          0.012   PREDICTED: similar to Mucin-12 
MUC12                 0.012   PREDICTED: mucin 12, cell surface associated 
TLE3                  0.011   transducin-like enhancer protein 3 isoform c 
TGOLN2                0.011   trans-golgi network protein 2 
MUC21                 0.011   mucin 21 
FLJ37078              0.011   hypothetical protein LOC222183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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