Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MED1 Sequence: fasta or formatted (1581aa) NCBI GI: 28559039
Description:

mediator complex subunit 1

Referenced in:

Nuclear Receptors
RNA Polymerase and General Transcription Factors
Thyroid and Thyroid Hormone Receptor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         65           2
 C cysteine            1.1         17           1
 D aspartate           5.8         91           3
 E glutamate           3.9         62           2
 F phenylalanine       2.5         40           2
 G glycine             7.9        125           2
 H histidine           3.0         48           2
 I isoleucine          3.9         62           3
 K lysine              8.0        126           4
 L leucine             7.3        115           2
 M methionine          2.9         46           1
 N asparagine          4.2         67           3
 P proline             8.3        132           3
 Q glutamine           4.0         64           2
 R arginine            2.9         46           2
 S serine             17.6        278           7
 T threonine           6.2         98           3
 V valine              4.4         69           2
 W tryptophan          0.3          4           1
 Y tyrosine            1.6         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mediator complex subunit 1 
DSPP                  0.040   dentin sialophosphoprotein preproprotein 
MUC12                 0.027   PREDICTED: mucin 12 
HRNR                  0.025   hornerin 
SRRM2                 0.024   splicing coactivator subunit SRm300 
MUC12                 0.021   PREDICTED: mucin 12, cell surface associated 
LOC100170229          0.020   hypothetical protein LOC100170229 
MUC21                 0.020   mucin 21 
FLG                   0.019   filaggrin 
MUC12                 0.019   PREDICTED: mucin 12 
ZC3H18                0.019   zinc finger CCCH-type containing 18 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
NKTR                  0.017   natural killer-tumor recognition sequence 
FLG2                  0.016   filaggrin family member 2 
MLLT6                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
TNRC18                0.016   trinucleotide repeat containing 18 
LOC100133915          0.016   PREDICTED: hypothetical protein 
KIAA1853              0.015   KIAA1853 protein 
AFF4                  0.015   ALL1 fused gene from 5q31 
UBN1                  0.015   ubinuclein 1 
UBN1                  0.015   ubinuclein 1 
TRIP12                0.015   thyroid hormone receptor interactor 12 
NAV3                  0.015   neuron navigator 3 
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform b ...
MUC17                 0.014   mucin 17 
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform f...
LOC100130716          0.014   PREDICTED: similar to mucin 11 
MUC12                 0.014   PREDICTED: mucin 12 
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press