Guide to the Human Genome
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Name: GARNL1 Sequence: fasta or formatted (2036aa) NCBI GI: 51226124
Description:

GTPase activating Rap/RanGAP domain-like 1 isoform 1

Referenced in:

Ras

Other entries for this name:
alt prot [2083aa] GTPase activating Rap/RanGAP domain-like 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2        106           3
 C cysteine            1.6         33           2
 D aspartate           5.2        105           2
 E glutamate           7.4        150           3
 F phenylalanine       4.1         83           2
 G glycine             4.5         92           3
 H histidine           3.6         73           2
 I isoleucine          6.2        126           2
 K lysine              5.6        114           2
 L leucine            10.6        216           3
 M methionine          2.4         48           1
 N asparagine          4.4         89           2
 P proline             5.8        119           3
 Q glutamine           4.8         97           2
 R arginine            4.3         88           2
 S serine              9.2        187           4
 T threonine           5.7        116           3
 V valine              6.0        122           2
 W tryptophan          1.3         26           1
 Y tyrosine            2.3         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTPase activating Rap/RanGAP domain-like 1 isoform 1... 
GARNL1                0.999   GTPase activating Rap/RanGAP domain-like 1 isoform 2...
C20orf74              0.276   akt substrate AS250 
TSC2                  0.018   tuberous sclerosis 2 isoform 4 
TSC2                  0.018   tuberous sclerosis 2 isoform 1 
TSC2                  0.018   tuberous sclerosis 2 isoform 5 
GARNL3                0.014   GTPase activating Rap/RanGAP domain-like 3 
RAP1GAP               0.013   RAP1 GTPase activating protein isoform c 
RAP1GAP               0.013   RAP1 GTPase activating protein isoform a 
RAP1GAP               0.013   RAP1 GTPase activating protein isoform b 
GARNL4                0.012   GTPase activating Rap/RanGAP domain-like 4 isoform ...
GARNL4                0.012   GTPase activating Rap/RanGAP domain-like 4 isoform ...
SIPA1L2               0.012   signal-induced proliferation-associated 1 like 2 [H...
SIPA1L1               0.012   signal-induced proliferation-associated 1 like 1 [Hom...
SIPA1L3               0.012   signal-induced proliferation-associated 1 like 3 [Ho...
SIPA1                 0.010   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.010   signal-induced proliferation-associated protein 1 [...
KIAA1219              0.009   hypothetical protein LOC57148 
DSPP                  0.004   dentin sialophosphoprotein preproprotein 
TMEM131               0.003   RW1 protein 
MUC12                 0.003   PREDICTED: mucin 12 
MUC21                 0.003   mucin 21 
TPR                   0.003   nuclear pore complex-associated protein TPR 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC729792             0.002   PREDICTED: hypothetical protein 
LOC100294501          0.002   PREDICTED: hypothetical protein 
LOC100294249          0.002   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.002   PREDICTED: hypothetical protein 
LOC100294204          0.002   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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