Guide to the Human Genome
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Name: MUC21 Sequence: fasta or formatted (566aa) NCBI GI: 161016767
Description:

mucin 21

Referenced in:

Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         61           2
 C cysteine            0.2          1           1
 D aspartate           0.5          3           1
 E glutamate           4.6         26           1
 F phenylalanine       1.6          9           2
 G glycine             9.0         51           2
 H histidine           1.6          9           1
 I isoleucine          1.8         10           1
 K lysine              0.5          3           1
 L leucine             2.8         16           3
 M methionine          1.1          6           1
 N asparagine          7.2         41           1
 P proline             2.3         13           1
 Q glutamine           0.2          1           1
 R arginine            1.6          9           2
 S serine             30.0        170           2
 T threonine          19.3        109           2
 V valine              4.1         23           2
 W tryptophan          0.7          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 21 
DSPP                  0.197   dentin sialophosphoprotein preproprotein 
LOC729792             0.183   PREDICTED: hypothetical protein 
LOC729792             0.183   PREDICTED: hypothetical protein 
LOC100294136          0.183   PREDICTED: hypothetical protein 
LOC100294091          0.183   PREDICTED: hypothetical protein 
LOC730401             0.183   PREDICTED: hypothetical protein 
LOC729792             0.182   PREDICTED: hypothetical protein 
LOC100294249          0.182   PREDICTED: hypothetical protein XP_002344067 
LOC100294501          0.180   PREDICTED: hypothetical protein 
LOC100294238          0.180   PREDICTED: hypothetical protein 
LOC100294204          0.180   PREDICTED: hypothetical protein 
LOC729815             0.131   PREDICTED: hypothetical protein 
LOC729815             0.128   PREDICTED: hypothetical protein 
MUC17                 0.121   mucin 17 
MUC5B                 0.119   mucin 5, subtype B, tracheobronchial 
MUC3A                 0.118   PREDICTED: mucin 3A, intestinal 
LOC100133915          0.117   PREDICTED: hypothetical protein 
MUC5AC                0.114   mucin 5AC 
LOC100294236          0.113   PREDICTED: similar to diffuse panbronchiolitis crit...
LOC100134138          0.113   PREDICTED: similar to mucin, partial 
MUC3A                 0.110   PREDICTED: mucin 3A, cell surface associated, parti...
MUC12                 0.110   PREDICTED: mucin 12 
MUC2                  0.108   mucin 2 precursor 
LOC100130716          0.106   PREDICTED: similar to mucin 11 
MUC12                 0.106   PREDICTED: mucin 12, cell surface associated 
LOC100294420          0.105   PREDICTED: similar to mucin 2 
LOC100133408          0.104   PREDICTED: similar to mucin 
LOC100130716          0.103   PREDICTED: similar to Mucin-12 
MUC12                 0.102   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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