Guide to the Human Genome
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Name: NR2C1 Sequence: fasta or formatted (467aa) NCBI GI: 73808084
Description:

nuclear receptor subfamily 2, group C, member 1 isoform b

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [603aa] nuclear receptor subfamily 2, group C, member 1 isoform a
alt prot [483aa] nuclear receptor subfamily 2, group C, member 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         31           2
 C cysteine            3.4         16           1
 D aspartate           4.9         23           2
 E glutamate           5.6         26           2
 F phenylalanine       3.6         17           2
 G glycine             6.2         29           1
 H histidine           2.8         13           2
 I isoleucine          5.1         24           2
 K lysine              4.9         23           1
 L leucine             9.2         43           2
 M methionine          3.0         14           1
 N asparagine          5.1         24           1
 P proline             3.4         16           1
 Q glutamine           6.2         29           2
 R arginine            3.6         17           1
 S serine             10.5         49           2
 T threonine           7.7         36           2
 V valine              5.6         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 2, group C, member 1 isof... 
NR2C1                 0.993   nuclear receptor subfamily 2, group C, member 1 iso...
NR2C1                 0.993   nuclear receptor subfamily 2, group C, member 1 iso...
NR2C2                 0.524   nuclear receptor subfamily 2, group C, member 2 [Hom...
RXRG                  0.119   retinoid X receptor, gamma isoform a 
RXRB                  0.113   retinoid X receptor, beta 
RXRA                  0.112   retinoid X receptor, alpha 
HNF4A                 0.111   hepatocyte nuclear factor 4 alpha isoform c 
HNF4A                 0.111   hepatocyte nuclear factor 4 alpha isoform a 
HNF4A                 0.111   hepatocyte nuclear factor 4 alpha isoform b 
NR2F1                 0.110   nuclear receptor subfamily 2, group F, member 1 [Homo...
HNF4A                 0.108   hepatocyte nuclear factor 4 alpha isoform f 
HNF4A                 0.108   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.108   hepatocyte nuclear factor 4 alpha isoform d 
NR2F6                 0.108   nuclear receptor subfamily 2, group F, member 6 [Hom...
HNF4G                 0.107   hepatocyte nuclear factor 4, gamma 
NR2F2                 0.106   nuclear receptor subfamily 2, group F, member 2 isof...
RARG                  0.103   retinoic acid receptor, gamma isoform 2 
RARG                  0.103   retinoic acid receptor, gamma isoform 1 
RARB                  0.102   retinoic acid receptor, beta isoform 1 
RARA                  0.101   retinoic acid receptor, alpha isoform 2 
RARA                  0.100   retinoic acid receptor, alpha isoform 1 
RARA                  0.100   retinoic acid receptor, alpha isoform 1 
RORA                  0.097   RAR-related orphan receptor A isoform d 
RORA                  0.097   RAR-related orphan receptor A isoform c 
RORA                  0.097   RAR-related orphan receptor A isoform b 
RORA                  0.097   RAR-related orphan receptor A isoform a 
RORB                  0.092   RAR-related orphan receptor B 
NR4A2                 0.091   nuclear receptor subfamily 4, group A, member 2 [Homo...
RORC                  0.091   RAR-related orphan receptor C isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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