Guide to the Human Genome
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Name: HNF4A Sequence: fasta or formatted (442aa) NCBI GI: 71725341
Description:

hepatocyte nuclear factor 4 alpha isoform e

Referenced in:

Liver
Nuclear Receptors

Other entries for this name:
alt prot [474aa] hepatocyte nuclear factor 4 alpha isoform b
alt prot [464aa] hepatocyte nuclear factor 4 alpha isoform a
alt prot [417aa] hepatocyte nuclear factor 4 alpha isoform c
alt prot [395aa] hepatocyte nuclear factor 4 alpha isoform f
alt prot [452aa] hepatocyte nuclear factor 4 alpha isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         31           1
 C cysteine            2.7         12           1
 D aspartate           5.4         24           2
 E glutamate           5.4         24           1
 F phenylalanine       2.7         12           2
 G glycine             6.1         27           2
 H histidine           2.7         12           2
 I isoleucine          6.1         27           2
 K lysine              5.4         24           2
 L leucine            10.9         48           5
 M methionine          2.9         13           1
 N asparagine          3.6         16           1
 P proline             6.6         29           2
 Q glutamine           5.0         22           1
 R arginine            5.9         26           2
 S serine              8.8         39           2
 T threonine           3.6         16           1
 V valine              5.9         26           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.988   hepatocyte nuclear factor 4 alpha isoform d 
HNF4A                 0.964   hepatocyte nuclear factor 4 alpha isoform a 
HNF4A                 0.954   hepatocyte nuclear factor 4 alpha isoform b 
HNF4A                 0.794   hepatocyte nuclear factor 4 alpha isoform f 
HNF4A                 0.759   hepatocyte nuclear factor 4 alpha isoform c 
HNF4G                 0.684   hepatocyte nuclear factor 4, gamma 
RXRA                  0.281   retinoid X receptor, alpha 
RXRG                  0.273   retinoid X receptor, gamma isoform a 
RXRB                  0.273   retinoid X receptor, beta 
NR2F6                 0.236   nuclear receptor subfamily 2, group F, member 6 [Hom...
NR2F2                 0.229   nuclear receptor subfamily 2, group F, member 2 isof...
NR2F1                 0.225   nuclear receptor subfamily 2, group F, member 1 [Homo...
ESRRB                 0.184   estrogen-related receptor beta 
NR2E3                 0.184   photoreceptor-specific nuclear receptor isoform b [Ho...
ESRRG                 0.177   estrogen-related receptor gamma isoform 2 
ESRRG                 0.177   estrogen-related receptor gamma isoform 2 
ESRRG                 0.177   estrogen-related receptor gamma isoform 1 
ESRRG                 0.177   estrogen-related receptor gamma isoform 2 
NR2E1                 0.176   nuclear receptor subfamily 2, group E, member 1 [Homo...
RARB                  0.167   retinoic acid receptor, beta isoform 1 
ESRRA                 0.159   estrogen-related receptor alpha 
RARA                  0.157   retinoic acid receptor, alpha isoform 1 
RARA                  0.157   retinoic acid receptor, alpha isoform 2 
RARA                  0.157   retinoic acid receptor, alpha isoform 1 
RARG                  0.156   retinoic acid receptor, gamma isoform 2 
RARG                  0.156   retinoic acid receptor, gamma isoform 1 
NR2E3                 0.150   photoreceptor-specific nuclear receptor isoform a [Ho...
NR4A2                 0.139   nuclear receptor subfamily 4, group A, member 2 [Homo...
THRB                  0.138   thyroid hormone receptor, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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