RORA 11509

Name: RORA	Sequence: fasta or formatted (523aa)		NCBI GI: 19743903
Description: RAR-related orphan receptor A isoform a		Referenced in: Circadian Rhythms Gene Structure Nuclear Receptors
Other entries for this name: alt prot [556aa] RAR-related orphan receptor A isoform b alt prot [468aa] RAR-related orphan receptor A isoform d alt prot [548aa] RAR-related orphan receptor A isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 36 3 C cysteine 3.6 19 1 D aspartate 5.0 26 2 E glutamate 7.3 38 2 F phenylalanine 4.6 24 2 G glycine 5.2 27 1 H histidine 2.7 14 1 I isoleucine 6.1 32 2 K lysine 6.1 32 2 L leucine 7.6 40 2 M methionine 2.3 12 1 N asparagine 3.1 16 2 P proline 5.0 26 2 Q glutamine 7.5 39 4 R arginine 5.2 27 2 S serine 9.2 48 2 T threonine 5.0 26 1 V valine 4.2 22 2 W tryptophan 0.6 3 1 Y tyrosine 3.1 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RAR-related orphan receptor A isoform a RORA 0.879 RAR-related orphan receptor A isoform d RORA 0.879 RAR-related orphan receptor A isoform c RORA 0.879 RAR-related orphan receptor A isoform b RORB 0.536 RAR-related orphan receptor B RORC 0.430 RAR-related orphan receptor C isoform a RORC 0.415 RAR-related orphan receptor C isoform b NR1D2 0.114 nuclear receptor subfamily 1, group D, member 2 iso... NR1D2 0.114 nuclear receptor subfamily 1, group D, member 2 iso... NR2C1 0.103 nuclear receptor subfamily 2, group C, member 1 iso... NR1D1 0.102 nuclear receptor subfamily 1, group D, member 1 [Hom... NR5A2 0.095 nuclear receptor subfamily 5, group A, member 2 isof... NR5A2 0.095 nuclear receptor subfamily 5, group A, member 2 isofo... RARA 0.095 retinoic acid receptor, alpha isoform 1 RARA 0.095 retinoic acid receptor, alpha isoform 1 RARG 0.093 retinoic acid receptor, gamma isoform 2 RARG 0.093 retinoic acid receptor, gamma isoform 1 RARB 0.093 retinoic acid receptor, beta isoform 1 RARA 0.092 retinoic acid receptor, alpha isoform 2 PPARG 0.091 peroxisome proliferative activated receptor gamma i... PPARG 0.091 peroxisome proliferative activated receptor gamma is... PPARG 0.091 peroxisome proliferative activated receptor gamma i... PPARG 0.091 peroxisome proliferative activated receptor gamma i... NR2F1 0.091 nuclear receptor subfamily 2, group F, member 1 [Homo... NR2F2 0.091 nuclear receptor subfamily 2, group F, member 2 isof... RXRG 0.091 retinoid X receptor, gamma isoform a RXRA 0.087 retinoid X receptor, alpha NR2C1 0.086 nuclear receptor subfamily 2, group C, member 1 iso... NR2C1 0.086 nuclear receptor subfamily 2, group C, member 1 isof... RXRB 0.085 retinoid X receptor, beta Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.