Guide to the Human Genome
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Name: RORC Sequence: fasta or formatted (497aa) NCBI GI: 48255918
Description:

RAR-related orphan receptor C isoform b

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [518aa] RAR-related orphan receptor C isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         33           2
 C cysteine            4.2         21           1
 D aspartate           2.8         14           1
 E glutamate           7.4         37           2
 F phenylalanine       3.8         19           2
 G glycine             7.2         36           2
 H histidine           3.8         19           3
 I isoleucine          3.4         17           1
 K lysine              5.0         25           2
 L leucine            10.9         54           2
 M methionine          1.8          9           1
 N asparagine          2.4         12           2
 P proline             5.2         26           2
 Q glutamine           7.0         35           5
 R arginine            7.2         36           2
 S serine              8.9         44           2
 T threonine           4.0         20           1
 V valine              4.4         22           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAR-related orphan receptor C isoform b 
RORC                  0.995   RAR-related orphan receptor C isoform a 
RORA                  0.436   RAR-related orphan receptor A isoform d 
RORA                  0.435   RAR-related orphan receptor A isoform b 
RORA                  0.434   RAR-related orphan receptor A isoform c 
RORA                  0.434   RAR-related orphan receptor A isoform a 
RORB                  0.415   RAR-related orphan receptor B 
NR1D1                 0.196   nuclear receptor subfamily 1, group D, member 1 [Hom...
NR1D2                 0.106   nuclear receptor subfamily 1, group D, member 2 iso...
NR1D2                 0.106   nuclear receptor subfamily 1, group D, member 2 iso...
PPARG                 0.092   peroxisome proliferative activated receptor gamma i...
PPARG                 0.092   peroxisome proliferative activated receptor gamma is...
PPARG                 0.092   peroxisome proliferative activated receptor gamma i...
PPARG                 0.092   peroxisome proliferative activated receptor gamma i...
NR2F2                 0.092   nuclear receptor subfamily 2, group F, member 2 isof...
NR2F1                 0.091   nuclear receptor subfamily 2, group F, member 1 [Homo...
RARG                  0.091   retinoic acid receptor, gamma isoform 2 
RARG                  0.091   retinoic acid receptor, gamma isoform 1 
RARB                  0.090   retinoic acid receptor, beta isoform 1 
RARA                  0.089   retinoic acid receptor, alpha isoform 1 
RARA                  0.089   retinoic acid receptor, alpha isoform 2 
RARA                  0.089   retinoic acid receptor, alpha isoform 1 
NR2C1                 0.088   nuclear receptor subfamily 2, group C, member 1 iso...
RXRB                  0.087   retinoid X receptor, beta 
NR2C2                 0.087   nuclear receptor subfamily 2, group C, member 2 [Hom...
PPARA                 0.087   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.087   peroxisome proliferative activated receptor, alpha [H...
RXRA                  0.086   retinoid X receptor, alpha 
NR4A3                 0.085   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.085   nuclear receptor subfamily 4, group A, member 3 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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