Guide to the Human Genome
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Name: RORA Sequence: fasta or formatted (548aa) NCBI GI: 4506577
Description:

RAR-related orphan receptor A isoform c

Referenced in:

Circadian Rhythms
Nuclear Receptors

Other entries for this name:
alt prot [556aa] RAR-related orphan receptor A isoform b
alt prot [523aa] RAR-related orphan receptor A isoform a
alt prot [468aa] RAR-related orphan receptor A isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         35           1
 C cysteine            3.8         21           1
 D aspartate           4.9         27           2
 E glutamate           7.1         39           2
 F phenylalanine       5.3         29           2
 G glycine             5.5         30           1
 H histidine           2.7         15           1
 I isoleucine          6.2         34           2
 K lysine              5.7         31           2
 L leucine             8.8         48           2
 M methionine          2.6         14           1
 N asparagine          3.5         19           2
 P proline             4.2         23           2
 Q glutamine           7.1         39           4
 R arginine            5.3         29           2
 S serine              8.4         46           3
 T threonine           4.9         27           1
 V valine              3.8         21           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAR-related orphan receptor A isoform c 
RORA                  0.902   RAR-related orphan receptor A isoform b 
RORA                  0.835   RAR-related orphan receptor A isoform d 
RORA                  0.831   RAR-related orphan receptor A isoform a 
RORB                  0.509   RAR-related orphan receptor B 
RORC                  0.393   RAR-related orphan receptor C isoform b 
RORC                  0.393   RAR-related orphan receptor C isoform a 
NR1D2                 0.108   nuclear receptor subfamily 1, group D, member 2 iso...
NR1D2                 0.108   nuclear receptor subfamily 1, group D, member 2 iso...
NR2C1                 0.098   nuclear receptor subfamily 2, group C, member 1 iso...
NR1D1                 0.095   nuclear receptor subfamily 1, group D, member 1 [Hom...
NR5A2                 0.090   nuclear receptor subfamily 5, group A, member 2 isof...
NR5A2                 0.090   nuclear receptor subfamily 5, group A, member 2 isofo...
RARG                  0.088   retinoic acid receptor, gamma isoform 2 
RARG                  0.088   retinoic acid receptor, gamma isoform 1 
RARB                  0.088   retinoic acid receptor, beta isoform 1 
RARA                  0.087   retinoic acid receptor, alpha isoform 1 
RARA                  0.087   retinoic acid receptor, alpha isoform 2 
RARA                  0.087   retinoic acid receptor, alpha isoform 1 
RXRA                  0.082   retinoid X receptor, alpha 
NR2C1                 0.081   nuclear receptor subfamily 2, group C, member 1 iso...
NR2C1                 0.081   nuclear receptor subfamily 2, group C, member 1 isof...
PPARG                 0.081   peroxisome proliferative activated receptor gamma i...
PPARG                 0.081   peroxisome proliferative activated receptor gamma is...
PPARG                 0.081   peroxisome proliferative activated receptor gamma i...
PPARG                 0.081   peroxisome proliferative activated receptor gamma i...
NR2F1                 0.081   nuclear receptor subfamily 2, group F, member 1 [Homo...
NR2F2                 0.080   nuclear receptor subfamily 2, group F, member 2 isof...
RXRB                  0.080   retinoid X receptor, beta 
RXRG                  0.078   retinoid X receptor, gamma isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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