Guide to the Human Genome
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Name: RXRB Sequence: fasta or formatted (533aa) NCBI GI: 11415052
Description:

retinoid X receptor, beta

Referenced in:

Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         41           7
 C cysteine            3.0         16           1
 D aspartate           5.3         28           2
 E glutamate           5.4         29           2
 F phenylalanine       2.8         15           3
 G glycine            11.3         60           3
 H histidine           2.1         11           1
 I isoleucine          3.2         17           2
 K lysine              4.7         25           1
 L leucine             8.6         46           3
 M methionine          2.3         12           1
 N asparagine          1.9         10           1
 P proline            12.2         65           5
 Q glutamine           3.8         20           2
 R arginine            7.1         38           4
 S serine              8.1         43           3
 T threonine           3.0         16           1
 V valine              5.3         28           1
 W tryptophan          0.9          5           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoid X receptor, beta 
RXRA                  0.554   retinoid X receptor, alpha 
RXRG                  0.510   retinoid X receptor, gamma isoform a 
NR2F2                 0.238   nuclear receptor subfamily 2, group F, member 2 isof...
NR2F1                 0.227   nuclear receptor subfamily 2, group F, member 1 [Homo...
NR2F6                 0.224   nuclear receptor subfamily 2, group F, member 6 [Hom...
HNF4G                 0.224   hepatocyte nuclear factor 4, gamma 
HNF4A                 0.217   hepatocyte nuclear factor 4 alpha isoform a 
HNF4A                 0.217   hepatocyte nuclear factor 4 alpha isoform b 
HNF4A                 0.217   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.217   hepatocyte nuclear factor 4 alpha isoform d 
HNF4A                 0.216   hepatocyte nuclear factor 4 alpha isoform c 
HNF4A                 0.216   hepatocyte nuclear factor 4 alpha isoform f 
NR2E3                 0.176   photoreceptor-specific nuclear receptor isoform b [Ho...
ESRRB                 0.172   estrogen-related receptor beta 
ESRRG                 0.169   estrogen-related receptor gamma isoform 2 
ESRRG                 0.169   estrogen-related receptor gamma isoform 2 
ESRRG                 0.169   estrogen-related receptor gamma isoform 1 
ESRRG                 0.169   estrogen-related receptor gamma isoform 2 
RARG                  0.167   retinoic acid receptor, gamma isoform 1 
NR2E1                 0.167   nuclear receptor subfamily 2, group E, member 1 [Homo...
ESRRA                 0.166   estrogen-related receptor alpha 
RARA                  0.164   retinoic acid receptor, alpha isoform 2 
RARG                  0.163   retinoic acid receptor, gamma isoform 2 
RARB                  0.163   retinoic acid receptor, beta isoform 1 
RARA                  0.161   retinoic acid receptor, alpha isoform 1 
RARA                  0.161   retinoic acid receptor, alpha isoform 1 
NR4A3                 0.150   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.150   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.150   nuclear receptor subfamily 4, group A, member 3 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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