Guide to the Human Genome
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Name: NR2C1 Sequence: fasta or formatted (483aa) NCBI GI: 189491766
Description:

nuclear receptor subfamily 2, group C, member 1 isoform c

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [603aa] nuclear receptor subfamily 2, group C, member 1 isoform a
alt prot [467aa] nuclear receptor subfamily 2, group C, member 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         34           2
 C cysteine            3.3         16           1
 D aspartate           5.2         25           2
 E glutamate           5.2         25           2
 F phenylalanine       3.7         18           2
 G glycine             5.8         28           1
 H histidine           2.9         14           2
 I isoleucine          5.6         27           2
 K lysine              5.0         24           1
 L leucine             9.3         45           2
 M methionine          2.9         14           1
 N asparagine          5.0         24           1
 P proline             3.3         16           1
 Q glutamine           6.0         29           2
 R arginine            3.9         19           2
 S serine             10.1         49           2
 T threonine           7.9         38           2
 V valine              5.6         27           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 2, group C, member 1 iso... 
NR2C1                 0.965   nuclear receptor subfamily 2, group C, member 1 iso...
NR2C1                 0.963   nuclear receptor subfamily 2, group C, member 1 isof...
NR2C2                 0.510   nuclear receptor subfamily 2, group C, member 2 [Hom...
RXRG                  0.116   retinoid X receptor, gamma isoform a 
RXRB                  0.109   retinoid X receptor, beta 
RXRA                  0.108   retinoid X receptor, alpha 
HNF4A                 0.107   hepatocyte nuclear factor 4 alpha isoform c 
HNF4A                 0.107   hepatocyte nuclear factor 4 alpha isoform a 
HNF4A                 0.107   hepatocyte nuclear factor 4 alpha isoform b 
NR2F1                 0.106   nuclear receptor subfamily 2, group F, member 1 [Homo...
HNF4A                 0.105   hepatocyte nuclear factor 4 alpha isoform f 
HNF4A                 0.105   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.105   hepatocyte nuclear factor 4 alpha isoform d 
NR2F6                 0.105   nuclear receptor subfamily 2, group F, member 6 [Hom...
HNF4G                 0.104   hepatocyte nuclear factor 4, gamma 
NR2F2                 0.103   nuclear receptor subfamily 2, group F, member 2 isof...
RARG                  0.100   retinoic acid receptor, gamma isoform 2 
RARG                  0.100   retinoic acid receptor, gamma isoform 1 
RARB                  0.099   retinoic acid receptor, beta isoform 1 
RARA                  0.098   retinoic acid receptor, alpha isoform 2 
RARA                  0.097   retinoic acid receptor, alpha isoform 1 
RARA                  0.097   retinoic acid receptor, alpha isoform 1 
RORA                  0.094   RAR-related orphan receptor A isoform d 
RORA                  0.094   RAR-related orphan receptor A isoform c 
RORA                  0.094   RAR-related orphan receptor A isoform b 
RORA                  0.094   RAR-related orphan receptor A isoform a 
RORB                  0.089   RAR-related orphan receptor B 
NR4A2                 0.088   nuclear receptor subfamily 4, group A, member 2 [Homo...
RORC                  0.088   RAR-related orphan receptor C isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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