Guide to the Human Genome
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Name: RARA Sequence: fasta or formatted (462aa) NCBI GI: 4506419
Description:

retinoic acid receptor, alpha isoform 1

Referenced in:

Nuclear Receptors

Other entries for this name:
alt mRNA [462aa] retinoic acid receptor, alpha isoform 1
alt prot [365aa] retinoic acid receptor, alpha isoform 4
alt prot [457aa] retinoic acid receptor, alpha isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         21           2
 C cysteine            3.9         18           1
 D aspartate           4.3         20           2
 E glutamate           5.8         27           2
 F phenylalanine       3.5         16           3
 G glycine             7.1         33           4
 H histidine           1.7          8           1
 I isoleucine          4.8         22           2
 K lysine              5.8         27           4
 L leucine            10.0         46           2
 M methionine          3.0         14           1
 N asparagine          3.2         15           2
 P proline             9.5         44           3
 Q glutamine           4.3         20           1
 R arginine            5.2         24           2
 S serine              9.5         44           4
 T threonine           6.7         31           2
 V valine              4.1         19           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid receptor, alpha isoform 1 
RARA                  1.000   retinoic acid receptor, alpha isoform 1 
RARA                  0.865   retinoic acid receptor, alpha isoform 2 
RARB                  0.705   retinoic acid receptor, beta isoform 1 
RARG                  0.674   retinoic acid receptor, gamma isoform 1 
RARG                  0.667   retinoic acid receptor, gamma isoform 2 
RARA                  0.638   retinoic acid receptor, alpha isoform 4 
RARB                  0.578   retinoic acid receptor, beta isoform 2 
THRA                  0.242   thyroid hormone receptor, alpha isoform 1 
THRB                  0.230   thyroid hormone receptor, beta 
THRB                  0.230   thyroid hormone receptor, beta 
THRB                  0.230   thyroid hormone receptor, beta 
THRA                  0.214   thyroid hormone receptor, alpha isoform 2 
RXRG                  0.208   retinoid X receptor, gamma isoform a 
NR1H3                 0.197   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.197   nuclear receptor subfamily 1, group H, member 3 iso...
RXRA                  0.194   retinoid X receptor, alpha 
NR1H2                 0.194   nuclear receptor subfamily 1, group H, member 2 [Hom...
RXRB                  0.189   retinoid X receptor, beta 
NR4A3                 0.186   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.186   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.186   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A2                 0.185   nuclear receptor subfamily 4, group A, member 2 [Homo...
NR4A1                 0.179   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.179   nuclear receptor subfamily 4, group A, member 1 [Hom...
ESRRG                 0.176   estrogen-related receptor gamma isoform 2 
ESRRG                 0.176   estrogen-related receptor gamma isoform 2 
ESRRG                 0.176   estrogen-related receptor gamma isoform 1 
ESRRG                 0.176   estrogen-related receptor gamma isoform 2 
NR2F6                 0.163   nuclear receptor subfamily 2, group F, member 6 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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