Guide to the Human Genome
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Name: RARG Sequence: fasta or formatted (443aa) NCBI GI: 112181200
Description:

retinoic acid receptor, gamma isoform 2

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [454aa] retinoic acid receptor, gamma isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         26           2
 C cysteine            3.8         17           1
 D aspartate           5.0         22           2
 E glutamate           7.4         33           2
 F phenylalanine       3.8         17           2
 G glycine             7.4         33           2
 H histidine           1.4          6           1
 I isoleucine          4.1         18           2
 K lysine              6.3         28           4
 L leucine             9.9         44           2
 M methionine          3.8         17           1
 N asparagine          2.7         12           1
 P proline             7.9         35           5
 Q glutamine           4.1         18           1
 R arginine            6.3         28           4
 S serine              7.7         34           2
 T threonine           5.6         25           2
 V valine              3.6         16           1
 W tryptophan          0.5          2           1
 Y tyrosine            2.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid receptor, gamma isoform 2 
RARG                  0.886   retinoic acid receptor, gamma isoform 1 
RARB                  0.739   retinoic acid receptor, beta isoform 1 
RARA                  0.697   retinoic acid receptor, alpha isoform 1 
RARA                  0.697   retinoic acid receptor, alpha isoform 1 
RARA                  0.696   retinoic acid receptor, alpha isoform 2 
RARB                  0.577   retinoic acid receptor, beta isoform 2 
RARA                  0.475   retinoic acid receptor, alpha isoform 4 
THRA                  0.246   thyroid hormone receptor, alpha isoform 1 
THRB                  0.233   thyroid hormone receptor, beta 
THRB                  0.233   thyroid hormone receptor, beta 
THRB                  0.233   thyroid hormone receptor, beta 
RXRG                  0.224   retinoid X receptor, gamma isoform a 
THRA                  0.219   thyroid hormone receptor, alpha isoform 2 
NR1H3                 0.215   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.212   nuclear receptor subfamily 1, group H, member 3 iso...
RXRA                  0.207   retinoid X receptor, alpha 
RXRB                  0.200   retinoid X receptor, beta 
NR4A1                 0.198   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.198   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR1H2                 0.197   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR4A2                 0.193   nuclear receptor subfamily 4, group A, member 2 [Homo...
ESRRG                 0.191   estrogen-related receptor gamma isoform 2 
ESRRG                 0.191   estrogen-related receptor gamma isoform 2 
ESRRG                 0.191   estrogen-related receptor gamma isoform 1 
ESRRG                 0.191   estrogen-related receptor gamma isoform 2 
NR4A3                 0.183   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.183   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.183   nuclear receptor subfamily 4, group A, member 3 isof...
NR2F6                 0.182   nuclear receptor subfamily 2, group F, member 6 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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