RORA 11508

Name: RORA	Sequence: fasta or formatted (556aa)		NCBI GI: 19743901
Description: RAR-related orphan receptor A isoform b		Referenced in: Circadian Rhythms Nuclear Receptors
Other entries for this name: alt prot [523aa] RAR-related orphan receptor A isoform a alt prot [468aa] RAR-related orphan receptor A isoform d alt prot [548aa] RAR-related orphan receptor A isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 33 1 C cysteine 4.1 23 2 D aspartate 5.2 29 2 E glutamate 7.2 40 2 F phenylalanine 4.7 26 2 G glycine 6.1 34 1 H histidine 2.7 15 1 I isoleucine 6.3 35 2 K lysine 5.8 32 2 L leucine 8.3 46 2 M methionine 2.7 15 1 N asparagine 3.2 18 2 P proline 4.3 24 2 Q glutamine 7.7 43 4 R arginine 5.0 28 2 S serine 7.6 42 2 T threonine 4.9 27 1 V valine 4.3 24 2 W tryptophan 0.9 5 1 Y tyrosine 3.1 17 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RAR-related orphan receptor A isoform b RORA 0.885 RAR-related orphan receptor A isoform c RORA 0.818 RAR-related orphan receptor A isoform d RORA 0.816 RAR-related orphan receptor A isoform a RORB 0.500 RAR-related orphan receptor B RORC 0.386 RAR-related orphan receptor C isoform b RORC 0.386 RAR-related orphan receptor C isoform a NR1D2 0.106 nuclear receptor subfamily 1, group D, member 2 iso... NR1D2 0.106 nuclear receptor subfamily 1, group D, member 2 iso... NR2C1 0.096 nuclear receptor subfamily 2, group C, member 1 iso... NR1D1 0.092 nuclear receptor subfamily 1, group D, member 1 [Hom... NR5A2 0.089 nuclear receptor subfamily 5, group A, member 2 isof... NR5A2 0.089 nuclear receptor subfamily 5, group A, member 2 isofo... RARG 0.087 retinoic acid receptor, gamma isoform 2 RARG 0.087 retinoic acid receptor, gamma isoform 1 RARB 0.087 retinoic acid receptor, beta isoform 1 RARA 0.085 retinoic acid receptor, alpha isoform 1 RARA 0.085 retinoic acid receptor, alpha isoform 2 RARA 0.085 retinoic acid receptor, alpha isoform 1 RXRA 0.081 retinoid X receptor, alpha NR2C1 0.080 nuclear receptor subfamily 2, group C, member 1 iso... NR2C1 0.080 nuclear receptor subfamily 2, group C, member 1 isof... PPARG 0.080 peroxisome proliferative activated receptor gamma i... PPARG 0.080 peroxisome proliferative activated receptor gamma is... PPARG 0.080 peroxisome proliferative activated receptor gamma i... PPARG 0.080 peroxisome proliferative activated receptor gamma i... NR2F1 0.080 nuclear receptor subfamily 2, group F, member 1 [Homo... RXRB 0.079 retinoid X receptor, beta NR6A1 0.079 nuclear receptor subfamily 6, group A, member 1 isof... NR2F2 0.078 nuclear receptor subfamily 2, group F, member 2 isof... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.