Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7019485
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019485 programmed cell death 6 [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019485 programmed cell death 6 [Homo sapiens] 396 e-111
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 135 2e-32
gi|4507207 sorcin isoform a [Homo sapiens] 119 1e-27
gi|38679884 sorcin isoform b [Homo sapiens] 115 3e-26
gi|6912388 grancalcin, EF-hand calcium binding protein [Homo sap... 108 4e-24
gi|14161692 calpain small subunit 2 [Homo sapiens] 92 4e-19
gi|47078247 calpain 3 isoform f [Homo sapiens] 81 6e-16
gi|4557405 calpain 3 isoform a [Homo sapiens] 81 6e-16
gi|27765072 calpain 3 isoform b [Homo sapiens] 81 6e-16
gi|27765076 calpain 3 isoform d [Homo sapiens] 81 6e-16
gi|27765074 calpain 3 isoform c [Homo sapiens] 80 1e-15
gi|4502565 calpain, small subunit 1 [Homo sapiens] 79 2e-15
gi|51599151 calpain, small subunit 1 [Homo sapiens] 79 2e-15
gi|27765080 calpain 3 isoform e [Homo sapiens] 78 5e-15
gi|27765078 calpain 3 isoform e [Homo sapiens] 78 5e-15
gi|12408656 calpain 1, large subunit [Homo sapiens] 69 2e-12
gi|7705383 calpain 9 isoform 2 [Homo sapiens] 69 3e-12
gi|5729758 calpain 9 isoform 1 [Homo sapiens] 69 3e-12
gi|157389005 calpain 2 isoform 1 [Homo sapiens] 66 2e-11
gi|225703100 calpain 2 isoform 2 [Homo sapiens] 66 2e-11
gi|4885111 calmodulin-like 3 [Homo sapiens] 66 2e-11
gi|221554549 calpain 8 [Homo sapiens] 65 3e-11
gi|223278387 calmodulin-like 5 [Homo sapiens] 64 8e-11
gi|215490104 calpain 11 [Homo sapiens] 63 2e-10
gi|58218968 calmodulin 3 [Homo sapiens] 59 3e-09
gi|4502549 calmodulin 2 [Homo sapiens] 59 3e-09
gi|5901912 calmodulin 1 [Homo sapiens] 59 3e-09
gi|239755174 PREDICTED: similar to solute carrier family 25, mem... 54 6e-08
gi|56699403 solute carrier family 25, member 25 isoform b [Homo ... 54 6e-08
gi|38707981 calpain 12 [Homo sapiens] 53 1e-07
>gi|7019485 programmed cell death 6 [Homo sapiens]
Length = 191
Score = 396 bits (1017), Expect = e-111
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPF 60
MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPF
Sbjct: 1 MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPF 60
Query: 61 NPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS 120
NPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS
Sbjct: 61 NPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS 120
Query: 121 GFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSY 180
GFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSY
Sbjct: 121 GFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSY 180
Query: 181 EQYLSMVFSIV 191
EQYLSMVFSIV
Sbjct: 181 EQYLSMVFSIV 191
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 135 bits (340), Expect = 2e-32
Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 19 GAALPD---QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRE 75
G A P+ +++ W FQ VD D SG IS EL+QAL N W+ FN T +I+MFD+
Sbjct: 109 GGAPPNVDPEAYSW--FQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKT 166
Query: 76 NKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 135
++ F+ +WK+I W+N+F+ YDRD SG I EL+QALS GY LS QF +L+
Sbjct: 167 KSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLV 226
Query: 136 RKF-DRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 189
++ R + D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 227 SRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 281
>gi|4507207 sorcin isoform a [Homo sapiens]
Length = 198
Score = 119 bits (299), Expect = 1e-27
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 15/200 (7%)
Query: 3 AYSYRPGPGAG--PGPAAGA----ALPDQSF--LWNVFQRVDKDRSGVISDTELQQALSN 54
AY PG G G PG GA A P Q+ L+ F V + G I ELQ+ L+
Sbjct: 2 AYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQ 60
Query: 55 ----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMI 110
G + PFN T R ++SM DR+ + F+EF +W + W+ F ++D D SG +
Sbjct: 61 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV 120
Query: 111 DKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDT 170
D EL++AL+ G+RLS Q + + +++ G+ I FDD+I C+ L+ LTD FRR DT
Sbjct: 121 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRRDT 178
Query: 171 DQDGWIQVSYEQYLSMVFSI 190
Q G + Y+ ++ V S+
Sbjct: 179 AQQGVVNFPYDDFIQCVMSV 198
>gi|38679884 sorcin isoform b [Homo sapiens]
Length = 183
Score = 115 bits (287), Expect = 3e-26
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query: 11 GAGPGPAAGAALPDQSF--LWNVFQRVDKDRSGVISDTELQQALSN----GTWTPFNPVT 64
G PG G A P Q+ L+ F V + G I ELQ+ L+ G + PFN T
Sbjct: 4 GGAPG---GPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLET 59
Query: 65 VRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY 124
R ++SM DR+ + F+EF +W + W+ F ++D D SG +D EL++AL+ G+
Sbjct: 60 CRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGF 119
Query: 125 RLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 184
RLS Q + + +++ G+ I FDD+I C+ L+ LTD FRR DT Q G + Y+ ++
Sbjct: 120 RLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFI 177
Query: 185 SMVFSI 190
V S+
Sbjct: 178 QCVMSV 183
>gi|6912388 grancalcin, EF-hand calcium binding protein [Homo
sapiens]
Length = 217
Score = 108 bits (269), Expect = 4e-24
Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 6/156 (3%)
Query: 39 RSGVISDTELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 94
+ G + ELQ+ L+ NGT++PF+ T R +I+M DR++ + F+ F +W +
Sbjct: 64 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNA 123
Query: 95 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 154
W+ F T D+D SG ++ +EL+QA+ GYRLS Q +++++ + GR I FDD++
Sbjct: 124 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFDDYVAC 181
Query: 155 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
C+ L+ LTD FR+ D Q G Y+ +L +I
Sbjct: 182 CVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 217
Score = 27.7 bits (60), Expect = 6.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY 91
F VD+D SG + EL+QA+ + +P T+ +I+ + + + + F ++
Sbjct: 128 FMTVDQDGSGTVEHHELRQAIGLMGYR-LSPQTLTTIVKRYSKNGR--IFFDDYVACCVK 184
Query: 92 ITDWQNVFRTYDRDNSG 108
+ + FR D G
Sbjct: 185 LRALTDFFRKRDHLQQG 201
>gi|14161692 calpain small subunit 2 [Homo sapiens]
Length = 248
Score = 91.7 bits (226), Expect = 4e-19
Identities = 43/127 (33%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F+ T RSI+S+ D + + F EF +W I WQ V++ YDRD+SG + ++L+ AL
Sbjct: 119 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGAL 178
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
G++L++Q + +++R++ + G + F++FI + L + F+ D D+DG IQVS
Sbjct: 179 QAAGFQLNEQLYQMIVRRYANED-GDMDFNNFISCLVRLDAMFRAFKSLDRDRDGLIQVS 237
Query: 180 YEQYLSM 186
+++L +
Sbjct: 238 IKEWLQL 244
>gi|47078247 calpain 3 isoform f [Homo sapiens]
Length = 728
Score = 80.9 bits (198), Expect = 6e-16
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 RPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-------WTP 59
+ P PG + + Q F N+F+++ D + +D EL++ L+
Sbjct: 541 KQSPQPQPGSSDQESEEQQQFR-NIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHG 598
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 599 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 658
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 659 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 717
Query: 180 YEQYLSM 186
++L +
Sbjct: 718 VLEWLQL 724
>gi|4557405 calpain 3 isoform a [Homo sapiens]
Length = 821
Score = 80.9 bits (198), Expect = 6e-16
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 RPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-------WTP 59
+ P PG + + Q F N+F+++ D + +D EL++ L+
Sbjct: 634 KQSPQPQPGSSDQESEEQQQFR-NIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHG 691
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 692 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 751
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 752 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 810
Query: 180 YEQYLSM 186
++L +
Sbjct: 811 VLEWLQL 817
>gi|27765072 calpain 3 isoform b [Homo sapiens]
Length = 815
Score = 80.9 bits (198), Expect = 6e-16
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 RPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-------WTP 59
+ P PG + + Q F N+F+++ D + +D EL++ L+
Sbjct: 628 KQSPQPQPGSSDQESEEQQQFR-NIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHG 685
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 686 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 745
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 746 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 804
Query: 180 YEQYLSM 186
++L +
Sbjct: 805 VLEWLQL 811
>gi|27765076 calpain 3 isoform d [Homo sapiens]
Length = 309
Score = 80.9 bits (198), Expect = 6e-16
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 RPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-------WTP 59
+ P PG + + Q F N+F+++ D + +D EL++ L+
Sbjct: 122 KQSPQPQPGSSDQESEEQQQFR-NIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHG 179
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 180 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 239
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 240 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 298
Query: 180 YEQYLSM 186
++L +
Sbjct: 299 VLEWLQL 305
>gi|27765074 calpain 3 isoform c [Homo sapiens]
Length = 729
Score = 80.1 bits (196), Expect = 1e-15
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 10 PGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-------WTPFNP 62
P PG + + Q F N+F+++ D + +D EL++ L+ F
Sbjct: 545 PVPQPGSSDQESEEQQQFR-NIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTL 602
Query: 63 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 122
+ RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A++
Sbjct: 603 ESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDA 662
Query: 123 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 182
G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++ +
Sbjct: 663 GFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLE 721
Query: 183 YLSM 186
+L +
Sbjct: 722 WLQL 725
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 79.0 bits (193), Expect = 2e-15
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 64 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 123
T RS++++ D + + F EF +W I WQ +++ +D D SG I +EL A G
Sbjct: 143 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAG 202
Query: 124 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 183
+ L++ ++++IR++ + G + FD+FI + L + F+ D D G IQV+ +++
Sbjct: 203 FHLNEHLYNMIIRRYSDES-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 261
Query: 184 LSM 186
L +
Sbjct: 262 LQL 264
Score = 33.1 bits (74), Expect = 0.15
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 27 FLWN-------VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 79
+LWN ++++ D DRSG I +EL A + N II + E+
Sbjct: 166 YLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGF-HLNEHLYNMIIRRYSDES-GN 223
Query: 80 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKN 113
++F F + F++ D+D +G I N
Sbjct: 224 MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVN 257
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 79.0 bits (193), Expect = 2e-15
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 64 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 123
T RS++++ D + + F EF +W I WQ +++ +D D SG I +EL A G
Sbjct: 143 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAG 202
Query: 124 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 183
+ L++ ++++IR++ + G + FD+FI + L + F+ D D G IQV+ +++
Sbjct: 203 FHLNEHLYNMIIRRYSDES-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 261
Query: 184 LSM 186
L +
Sbjct: 262 LQL 264
Score = 33.1 bits (74), Expect = 0.15
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 27 FLWN-------VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 79
+LWN ++++ D DRSG I +EL A + N II + E+
Sbjct: 166 YLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGF-HLNEHLYNMIIRRYSDES-GN 223
Query: 80 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKN 113
++F F + F++ D+D +G I N
Sbjct: 224 MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVN 257
>gi|27765080 calpain 3 isoform e [Homo sapiens]
Length = 156
Score = 77.8 bits (190), Expect = 5e-15
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 27 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 86
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 87 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 145
Query: 180 YEQYLSM 186
++L +
Sbjct: 146 VLEWLQL 152
Score = 37.4 bits (85), Expect = 0.008
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 28 LWN-------VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGV 80
LWN +F+ D D+SG I+ E++ A+++ + N + II+M + +
Sbjct: 55 LWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNN--QLYDIITMRYADKHMNI 112
Query: 81 NFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELK 116
+F F + + F +D+D G+I N L+
Sbjct: 113 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLE 148
>gi|27765078 calpain 3 isoform e [Homo sapiens]
Length = 156
Score = 77.8 bits (190), Expect = 5e-15
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F + RS+I++ D + +N EF +W I WQ +F+ YD D SG I+ E++ A+
Sbjct: 27 FTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAV 86
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
+ G+ L++Q +DI+ ++ I FD FI + L+ + F +D D DG I+++
Sbjct: 87 NDAGFHLNNQLYDIITMRY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLN 145
Query: 180 YEQYLSM 186
++L +
Sbjct: 146 VLEWLQL 152
Score = 37.4 bits (85), Expect = 0.008
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 28 LWN-------VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGV 80
LWN +F+ D D+SG I+ E++ A+++ + N + II+M + +
Sbjct: 55 LWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNN--QLYDIITMRYADKHMNI 112
Query: 81 NFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELK 116
+F F + + F +D+D G+I N L+
Sbjct: 113 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLE 148
>gi|12408656 calpain 1, large subunit [Homo sapiens]
Length = 714
Score = 68.9 bits (167), Expect = 2e-12
Identities = 31/127 (24%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F+ + RS++++ DR+ + EF +W I ++ ++FR +D D SG + E++ A+
Sbjct: 585 FSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAI 644
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
G++L+ + ++++I ++ + FD+F+ + L+ + F+ DTD DG +
Sbjct: 645 ESAGFKLNKKLYELIITRYSEPDLA-VDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFD 703
Query: 180 YEQYLSM 186
++L +
Sbjct: 704 LFKWLQL 710
>gi|7705383 calpain 9 isoform 2 [Homo sapiens]
Length = 664
Score = 68.6 bits (166), Expect = 3e-12
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 63 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 122
++ ++IIS+ D + F EF W + W N+F +D D SG + EL+ AL
Sbjct: 538 ISCKNIISLMDTSGNGKLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAA 597
Query: 123 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 182
G++LS +++ ++ + Q+ FDDF+ + L+ + +F+ T +I ++ +
Sbjct: 598 GFQLSSHLLQLIVLRYADE-ELQLDFDDFLNCLVRLENASRVFQALSTKNKEFIHLNINE 656
Query: 183 YLSMVFSI 190
++ + +I
Sbjct: 657 FIHLTMNI 664
Score = 29.3 bits (64), Expect = 2.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 30 NVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVW 89
N+F R D D+SG +S EL+ AL + + + ++ D E + ++F +F
Sbjct: 572 NLFLRFDADKSGTMSTYELRTALKAAGFQLSSHLLQLIVLRYADEELQ--LDFDDFLNCL 629
Query: 90 KYITDWQNVFRTYDRDNSGMIDKN 113
+ + VF+ N I N
Sbjct: 630 VRLENASRVFQALSTKNKEFIHLN 653
>gi|5729758 calpain 9 isoform 1 [Homo sapiens]
Length = 690
Score = 68.6 bits (166), Expect = 3e-12
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 63 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 122
++ ++IIS+ D + F EF W + W N+F +D D SG + EL+ AL
Sbjct: 564 ISCKNIISLMDTSGNGKLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAA 623
Query: 123 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 182
G++LS +++ ++ + Q+ FDDF+ + L+ + +F+ T +I ++ +
Sbjct: 624 GFQLSSHLLQLIVLRYADE-ELQLDFDDFLNCLVRLENASRVFQALSTKNKEFIHLNINE 682
Query: 183 YLSMVFSI 190
++ + +I
Sbjct: 683 FIHLTMNI 690
Score = 29.3 bits (64), Expect = 2.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 30 NVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVW 89
N+F R D D+SG +S EL+ AL + + + ++ D E + ++F +F
Sbjct: 598 NLFLRFDADKSGTMSTYELRTALKAAGFQLSSHLLQLIVLRYADEELQ--LDFDDFLNCL 655
Query: 90 KYITDWQNVFRTYDRDNSGMIDKN 113
+ + VF+ N I N
Sbjct: 656 VRLENASRVFQALSTKNKEFIHLN 679
>gi|157389005 calpain 2 isoform 1 [Homo sapiens]
Length = 700
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F+ T + ++ M D + + EF +W I +Q ++R D D SG ++ E+++AL
Sbjct: 572 FSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKAL 631
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
G+++ Q H +++ +F + I FD+F++ + L+ L IF++ D + G I++
Sbjct: 632 EEAGFKMPCQLHQVIVARF-ADDQLIIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELD 690
Query: 180 YEQYL 184
+L
Sbjct: 691 LISWL 695
>gi|225703100 calpain 2 isoform 2 [Homo sapiens]
Length = 622
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 60 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119
F+ T + ++ M D + + EF +W I +Q ++R D D SG ++ E+++AL
Sbjct: 494 FSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKAL 553
Query: 120 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 179
G+++ Q H +++ +F + I FD+F++ + L+ L IF++ D + G I++
Sbjct: 554 EEAGFKMPCQLHQVIVARF-ADDQLIIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELD 612
Query: 180 YEQYL 184
+L
Sbjct: 613 LISWL 617
>gi|4885111 calmodulin-like 3 [Homo sapiens]
Length = 149
Score = 65.9 bits (159), Expect = 2e-11
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVW-K 90
F DKD G I+ EL + + P +R ++S DR+ V+F EF G+ +
Sbjct: 17 FSLFDKDGDGCITTRELGTVMRSLGQNP-TEAELRDMMSEIDRDGNGTVDFPEFLGMMAR 75
Query: 91 YITDWQN------VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 144
+ D N FR +D+D +G + EL+ ++ G +LSD+ D +IR D G G
Sbjct: 76 KMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDG 135
Query: 145 QIAFDDFIQ 153
Q+ +++F++
Sbjct: 136 QVNYEEFVR 144
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 92 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
+T+++ F +D+D G I EL + G ++ ++ + DR G G + F +F
Sbjct: 10 VTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEF 69
Query: 152 IQGCIVLQRLTD-------IFRRYDTDQDGWIQVS 179
+ + TD FR +D D +G++ +
Sbjct: 70 LGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAA 104
>gi|221554549 calpain 8 [Homo sapiens]
Length = 703
Score = 65.5 bits (158), Expect = 3e-11
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 48 LQQALSNGT---WTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDR 104
L +A S T + FN T R +IS+ D + EF +W I + ++ D
Sbjct: 560 LNEAFSKRTDIKFDGFNINTCREMISLLDSNGTGTLGAVEFKTLWLKIQKYLEIYWETDY 619
Query: 105 DNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDI 164
++SG ID +E++ AL G+ L+ Q + ++ G I FD F+ I L+ L +
Sbjct: 620 NHSGTIDAHEMRTALRKAGFTLNSQVQQTIALRYACSKLG-INFDSFVACMIRLETLFKL 678
Query: 165 FRRYDTDQDGWIQVSYEQYLSMV 187
F D D+DG +Q+S ++L V
Sbjct: 679 FSLLDEDKDGMVQLSLAEWLCCV 701
>gi|223278387 calmodulin-like 5 [Homo sapiens]
Length = 146
Score = 63.9 bits (154), Expect = 8e-11
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 18 AGAALPDQSFLWN-VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDREN 76
AG P++ + F VD D +G I+ EL AL T + +R +IS D +
Sbjct: 2 AGELTPEEEAQYKKAFSAVDTDGNGTINAQELGAALK-ATGKNLSEAQLRKLISEVDSDG 60
Query: 77 KAGVNFSEFTGVWKY----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHD 132
++F EF K + D Q FR +D+D G I +EL++A++G G L + D
Sbjct: 61 DGEISFQEFLTAAKKARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELD 120
Query: 133 ILIRKFDRQGRGQIAFDDF 151
+IR+ D G++ +++F
Sbjct: 121 AMIREADVDQDGRVNYEEF 139
>gi|215490104 calpain 11 [Homo sapiens]
Length = 739
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 66 RSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYR 125
R +I++ D++ + EF +WK + W ++FR D+D+SG ++ E++ + G +
Sbjct: 616 RCMINLMDKDGSGKLGLLEFKILWKKLKKWMDIFRECDQDHSGTLNSYEMRLVIEKAGIK 675
Query: 126 LSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLS 185
L+++ +L+ ++ I FD FI + L+ + F D G I +S EQ+L
Sbjct: 676 LNNKVMQVLVARYADDDL-IIDFDSFISCFLRLKTMFTFFLTMDPKNTGHICLSLEQWLQ 734
Query: 186 M 186
M
Sbjct: 735 M 735
>gi|58218968 calmodulin 3 [Homo sapiens]
Length = 149
Score = 58.9 bits (141), Expect = 3e-09
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF-TGVWK 90
F DKD G I+ EL + + P ++ +I+ D + ++F EF T + +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 91 YITDWQN------VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 144
+ D + FR +D+D +G I EL+ ++ G +L+D+ D +IR+ D G G
Sbjct: 76 KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 135
Query: 145 QIAFDDFIQ 153
Q+ +++F+Q
Sbjct: 136 QVNYEEFVQ 144
>gi|4502549 calmodulin 2 [Homo sapiens]
Length = 149
Score = 58.9 bits (141), Expect = 3e-09
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF-TGVWK 90
F DKD G I+ EL + + P ++ +I+ D + ++F EF T + +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 91 YITDWQN------VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 144
+ D + FR +D+D +G I EL+ ++ G +L+D+ D +IR+ D G G
Sbjct: 76 KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 135
Query: 145 QIAFDDFIQ 153
Q+ +++F+Q
Sbjct: 136 QVNYEEFVQ 144
>gi|5901912 calmodulin 1 [Homo sapiens]
Length = 149
Score = 58.9 bits (141), Expect = 3e-09
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF-TGVWK 90
F DKD G I+ EL + + P ++ +I+ D + ++F EF T + +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 91 YITDWQN------VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 144
+ D + FR +D+D +G I EL+ ++ G +L+D+ D +IR+ D G G
Sbjct: 76 KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 135
Query: 145 QIAFDDFIQ 153
Q+ +++F+Q
Sbjct: 136 QVNYEEFVQ 144
>gi|239755174 PREDICTED: similar to solute carrier family 25, member
25 isoform 1 [Homo sapiens]
Length = 503
Score = 54.3 bits (129), Expect = 6e-08
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 2 AAYSYRPGPGAGPGPAAGAAL--PDQSF-LWNVFQRVDKDRSGVISDTELQQALSNGTWT 58
AA S P + P GA PD LW +FQ +D +R G + +L L
Sbjct: 21 AASSSASSPASVGDPCGGAICGGPDHRLRLWRLFQTLDVNRDGGLCVNDLAVGLRR-LGL 79
Query: 59 PFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQN----VFRTYDRDNSGMIDKNE 114
++ I+ D++ ++F EF Y+ D + VF++ D+ N G ID E
Sbjct: 80 HRTEGELQKIVQAGDKDLDGQLDFEEFV---HYLQDHEKKLRLVFKSLDKKNDGRIDAQE 136
Query: 115 LKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
+ Q+L G ++S+Q + +++ D+ G I ++++
Sbjct: 137 IMQSLRDLGVKISEQQAEKILKSMDKNGTMTIDWNEW 173
Score = 28.1 bits (61), Expect = 4.8
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 98 VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIV 157
+F+T D + G + N+L L G ++ +++ D+ GQ+ F++F+
Sbjct: 53 LFQTLDVNRDGGLCVNDLAVGLRRLGLHRTEGELQKIVQAGDKDLDGQLDFEEFVH---Y 109
Query: 158 LQ----RLTDIFRRYDTDQDGWI 176
LQ +L +F+ D DG I
Sbjct: 110 LQDHEKKLRLVFKSLDKKNDGRI 132
>gi|56699403 solute carrier family 25, member 25 isoform b [Homo
sapiens]
Length = 503
Score = 54.3 bits (129), Expect = 6e-08
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 2 AAYSYRPGPGAGPGPAAGAAL--PDQSF-LWNVFQRVDKDRSGVISDTELQQALSNGTWT 58
AA S P + P GA PD LW +FQ +D +R G + +L L
Sbjct: 21 AASSSASSPASVGDPCGGAICGGPDHRLRLWRLFQTLDVNRDGGLCVNDLAVGLRR-LGL 79
Query: 59 PFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQN----VFRTYDRDNSGMIDKNE 114
++ I+ D++ ++F EF Y+ D + VF++ D+ N G ID E
Sbjct: 80 HRTEGELQKIVQAGDKDLDGQLDFEEFV---HYLQDHEKKLRLVFKSLDKKNDGRIDAQE 136
Query: 115 LKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
+ Q+L G ++S+Q + +++ D+ G I ++++
Sbjct: 137 IMQSLRDLGVKISEQQAEKILKSMDKNGTMTIDWNEW 173
Score = 28.1 bits (61), Expect = 4.8
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 98 VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIV 157
+F+T D + G + N+L L G ++ +++ D+ GQ+ F++F+
Sbjct: 53 LFQTLDVNRDGGLCVNDLAVGLRRLGLHRTEGELQKIVQAGDKDLDGQLDFEEFVH---Y 109
Query: 158 LQ----RLTDIFRRYDTDQDGWI 176
LQ +L +F+ D DG I
Sbjct: 110 LQDHEKKLRLVFKSLDKKNDGRI 132
>gi|38707981 calpain 12 [Homo sapiens]
Length = 719
Score = 53.1 bits (126), Expect = 1e-07
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 85 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 144
F +W Y+ +WQ +F +D D SG ++ EL+ AL+ G+ L++Q L ++ R R
Sbjct: 615 FQQLWGYLLEWQAIFNKFDEDTSGTMNSYELRLALNAAGFHLNNQLTQTLTSRY-RDSRL 673
Query: 145 QIAFDDFIQGCIVLQRLTDIFRRYDTDQDG 174
++ F+ F+ C+ LT IF DG
Sbjct: 674 RVDFERFV-SCVA--HLTCIFCHCSQHLDG 700
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,477,433
Number of Sequences: 37866
Number of extensions: 320653
Number of successful extensions: 2251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 408
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.