Guide to the Human Genome
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Name: CALML3 Sequence: fasta or formatted (149aa) NCBI GI: 4885111
Description:

calmodulin-like 3

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0          9           2
 C cysteine            0.7          1           1
 D aspartate          11.4         17           1
 E glutamate          13.4         20           3
 F phenylalanine       6.0          9           1
 G glycine             8.1         12           1
 H histidine           0.7          1           1
 I isoleucine          2.7          4           1
 K lysine              4.7          7           1
 L leucine             6.7         10           1
 M methionine          6.0          9           2
 N asparagine          3.4          5           1
 P proline             1.3          2           1
 Q glutamine           2.7          4           1
 R arginine            7.4         11           1
 S serine              4.0          6           1
 T threonine           6.7         10           2
 V valine              7.4         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calmodulin-like 3 
CALM3                 0.875   calmodulin 3 
CALM2                 0.875   calmodulin 2 
CALM1                 0.875   calmodulin 1 
CETN1                 0.460   centrin 1 
TNNC1                 0.452   troponin C, slow 
TNNC2                 0.449   fast skeletal muscle troponin C 
CETN2                 0.441   caltractin 
CALML5                0.419   calmodulin-like 5 
MYL6                  0.379   myosin, light chain 6, alkali, smooth muscle and non...
MYL6                  0.379   myosin, light chain 6, alkali, smooth muscle and non...
CALML6                0.368   calmodulin-like 6 
MYL6B                 0.360   smooth muscle and non-muscle myosin alkali light chai...
MYL9                  0.353   myosin regulatory light chain 9 isoform a 
MYL1                  0.353   fast skeletal myosin alkali light chain 1 isoform 1f...
CABP1                 0.353   calcium binding protein 1 isoform 3 
CABP1                 0.353   calcium binding protein 1 isoform 2 
CABP1                 0.353   calcium binding protein 1 isoform 1 
MYL1                  0.353   fast skeletal myosin alkali light chain 1 isoform 3f...
CALML4                0.342   calmodulin-like 4 isoform 1 
MYL3                  0.338   slow skeletal ventricular myosin alkali light chain 3...
CABP5                 0.338   calcium binding protein 5 
CETN3                 0.335   centrin 3 
CABP2                 0.335   calcium binding protein 2 isoform 2 
CABP2                 0.335   calcium binding protein 2 isoform 1 
MYL12B                0.331   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.331   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.331   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.331   myosin regulatory light chain MRCL2 isoform A 
MYL12A                0.327   myosin, light chain 12A, regulatory, non-sarcomeric [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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