Guide to the Human Genome
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Name: ARNT2 Sequence: fasta or formatted (717aa) NCBI GI: 68303555
Description:

aryl hydrocarbon receptor nuclear translocator 2

Referenced in:

Oxygen Sensing and Hemoglobin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         44           2
 C cysteine            1.5         11           1
 D aspartate           4.6         33           2
 E glutamate           5.7         41           2
 F phenylalanine       3.9         28           1
 G glycine             8.1         58           2
 H histidine           2.5         18           2
 I isoleucine          4.0         29           2
 K lysine              3.9         28           2
 L leucine             5.6         40           2
 M methionine          4.2         30           2
 N asparagine          3.2         23           1
 P proline             7.1         51           2
 Q glutamine           7.5         54           4
 R arginine            5.4         39           4
 S serine             11.9         85           4
 T threonine           5.6         40           2
 V valine              5.9         42           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aryl hydrocarbon receptor nuclear translocator 2 [Ho... 
ARNT                  0.587   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.583   aryl hydrocarbon receptor nuclear translocator isofor...
ARNT                  0.290   aryl hydrocarbon receptor nuclear translocator isofo...
ARNTL                 0.207   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.207   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.207   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL2                0.179   aryl hydrocarbon receptor nuclear translocator-like ...
EPAS1                 0.078   endothelial PAS domain protein 1 
HIF1A                 0.069   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.069   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
HIF3A                 0.065   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.063   hypoxia inducible factor 3, alpha subunit isoform c ...
NPAS2                 0.062   neuronal PAS domain protein 2 
SIM2                  0.062   single-minded homolog 2 long isoform 
SIM2                  0.062   single-minded homolog 2 short isoform 
SIM1                  0.062   single-minded homolog 1 
CLOCK                 0.060   clock 
HIF3A                 0.050   hypoxia inducible factor 3, alpha subunit isoform b ...
NPAS3                 0.047   neuronal PAS domain protein 3 isoform 1 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 1 
NPAS3                 0.040   neuronal PAS domain protein 3 isoform 2 
NCOA3                 0.039   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.039   nuclear receptor coactivator 3 isoform b 
NPAS1                 0.036   neuronal PAS domain protein 1 
PER2                  0.033   period 2 
PER3                  0.032   period 3 
PER1                  0.031   period 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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