SIM2 31046

Name: SIM2	Sequence: fasta or formatted (667aa)		NCBI GI: 4827004
Description: single-minded homolog 2 long isoform		Referenced in: Helix-Loop-Helix Transcription Factors
Other entries for this name: alt prot [570aa] single-minded homolog 2 short isoform
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.2 68 3 C cysteine 1.9 13 2 D aspartate 2.8 19 1 E glutamate 5.4 36 2 F phenylalanine 3.0 20 2 G glycine 6.3 42 2 H histidine 4.0 27 3 I isoleucine 2.8 19 2 K lysine 5.1 34 2 L leucine 10.9 73 3 M methionine 1.8 12 1 N asparagine 2.2 15 1 P proline 8.8 59 2 Q glutamine 3.9 26 2 R arginine 5.2 35 2 S serine 9.4 63 4 T threonine 4.9 33 2 V valine 5.4 36 2 W tryptophan 0.9 6 1 Y tyrosine 4.6 31 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 single-minded homolog 2 long isoform SIM2 0.783 single-minded homolog 2 short isoform SIM1 0.488 single-minded homolog 1 NPAS3 0.207 neuronal PAS domain protein 3 isoform 1 NPAS3 0.201 neuronal PAS domain protein 3 isoform 2 HIF1A 0.187 hypoxia-inducible factor 1, alpha subunit isoform 2 ... HIF1A 0.187 hypoxia-inducible factor 1, alpha subunit isoform 1 [... NPAS1 0.187 neuronal PAS domain protein 1 EPAS1 0.164 endothelial PAS domain protein 1 HIF3A 0.152 hypoxia inducible factor 3, alpha subunit isoform a ... HIF3A 0.152 hypoxia inducible factor 3, alpha subunit isoform c ... HIF3A 0.123 hypoxia inducible factor 3, alpha subunit isoform b ... AHR 0.076 aryl hydrocarbon receptor ARNTL 0.074 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.074 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.074 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL2 0.067 aryl hydrocarbon receptor nuclear translocator-like ... ARNT2 0.067 aryl hydrocarbon receptor nuclear translocator 2 [Ho... NPAS4 0.064 neuronal PAS domain protein 4 CLOCK 0.060 clock ARNT 0.056 aryl hydrocarbon receptor nuclear translocator isofo... ARNT 0.056 aryl hydrocarbon receptor nuclear translocator isofor... NPAS2 0.049 neuronal PAS domain protein 2 AHRR 0.049 arylhydrocarbon receptor repressor NCOA1 0.043 nuclear receptor coactivator 1 isoform 2 NCOA1 0.043 nuclear receptor coactivator 1 isoform 3 NCOA1 0.043 nuclear receptor coactivator 1 isoform 1 ARNT 0.033 aryl hydrocarbon receptor nuclear translocator isofo... NCOA2 0.032 nuclear receptor coactivator 2 NCOA3 0.025 nuclear receptor coactivator 3 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.