Guide to the Human Genome
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Name: HIF3A Sequence: fasta or formatted (669aa) NCBI GI: 90421311
Description:

hypoxia inducible factor 3, alpha subunit isoform c

Referenced in:

Oxygen Sensing and Hemoglobin

Other entries for this name:
alt prot [667aa] hypoxia inducible factor 3, alpha subunit isoform a
alt prot [613aa] hypoxia inducible factor 3, alpha subunit isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         61           2
 C cysteine            1.8         12           1
 D aspartate           6.0         40           3
 E glutamate           6.0         40           2
 F phenylalanine       2.7         18           1
 G glycine             7.2         48           2
 H histidine           2.8         19           1
 I isoleucine          2.7         18           1
 K lysine              2.5         17           1
 L leucine            12.9         86           2
 M methionine          1.6         11           1
 N asparagine          1.5         10           1
 P proline             9.3         62           2
 Q glutamine           4.5         30           2
 R arginine            7.0         47           2
 S serine             10.5         70           2
 T threonine           5.4         36           2
 V valine              3.9         26           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypoxia inducible factor 3, alpha subunit isoform c ... 
HIF3A                 0.989   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.921   hypoxia inducible factor 3, alpha subunit isoform b ...
HIF1A                 0.286   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.286   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
EPAS1                 0.286   endothelial PAS domain protein 1 
SIM1                  0.154   single-minded homolog 1 
SIM2                  0.154   single-minded homolog 2 long isoform 
SIM2                  0.154   single-minded homolog 2 short isoform 
NPAS3                 0.145   neuronal PAS domain protein 3 isoform 1 
NPAS3                 0.139   neuronal PAS domain protein 3 isoform 2 
NPAS1                 0.136   neuronal PAS domain protein 1 
ARNTL2                0.071   aryl hydrocarbon receptor nuclear translocator-like ...
CLOCK                 0.070   clock 
ARNT2                 0.068   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
ARNT                  0.066   aryl hydrocarbon receptor nuclear translocator isofor...
ARNT                  0.064   aryl hydrocarbon receptor nuclear translocator isofo...
NPAS2                 0.063   neuronal PAS domain protein 2 
ARNTL                 0.062   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.062   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.062   aryl hydrocarbon receptor nuclear translocator-like ...
AHR                   0.055   aryl hydrocarbon receptor 
NPAS4                 0.054   neuronal PAS domain protein 4 
AHRR                  0.035   arylhydrocarbon receptor repressor 
NCOA1                 0.034   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.034   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.034   nuclear receptor coactivator 1 isoform 1 
NCOA2                 0.033   nuclear receptor coactivator 2 
NCOA3                 0.031   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.031   nuclear receptor coactivator 3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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