Guide to the Human Genome
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Name: ARNTL Sequence: fasta or formatted (625aa) NCBI GI: 71852580
Description:

aryl hydrocarbon receptor nuclear translocator-like isoform a

Referenced in:

Circadian Rhythms

Other entries for this name:
alt mRNA [625aa] aryl hydrocarbon receptor nuclear translocator-like isoform a
alt prot [582aa] aryl hydrocarbon receptor nuclear translocator-like isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         32           2
 C cysteine            2.2         14           1
 D aspartate           7.4         46           2
 E glutamate           5.1         32           2
 F phenylalanine       3.4         21           2
 G glycine             7.8         49           2
 H histidine           2.7         17           1
 I isoleucine          5.8         36           1
 K lysine              6.1         38           3
 L leucine             8.0         50           2
 M methionine          3.0         19           1
 N asparagine          3.7         23           1
 P proline             6.9         43           3
 Q glutamine           2.9         18           1
 R arginine            5.6         35           3
 S serine             10.7         67           3
 T threonine           5.9         37           2
 V valine              4.6         29           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aryl hydrocarbon receptor nuclear translocator-like ... 
ARNTL                 1.000   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.926   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL2                0.438   aryl hydrocarbon receptor nuclear translocator-like ...
ARNT                  0.242   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.242   aryl hydrocarbon receptor nuclear translocator isofor...
ARNT2                 0.236   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
ARNT                  0.170   aryl hydrocarbon receptor nuclear translocator isofo...
CLOCK                 0.109   clock 
NPAS2                 0.102   neuronal PAS domain protein 2 
HIF1A                 0.090   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.090   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
EPAS1                 0.089   endothelial PAS domain protein 1 
SIM1                  0.084   single-minded homolog 1 
SIM2                  0.079   single-minded homolog 2 long isoform 
SIM2                  0.079   single-minded homolog 2 short isoform 
HIF3A                 0.070   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.066   hypoxia inducible factor 3, alpha subunit isoform c ...
NPAS3                 0.066   neuronal PAS domain protein 3 isoform 1 
NPAS3                 0.060   neuronal PAS domain protein 3 isoform 2 
NPAS1                 0.059   neuronal PAS domain protein 1 
AHR                   0.055   aryl hydrocarbon receptor 
NCOA3                 0.054   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.054   nuclear receptor coactivator 3 isoform b 
HIF3A                 0.054   hypoxia inducible factor 3, alpha subunit isoform b ...
PER2                  0.051   period 2 
PER3                  0.049   period 3 
NCOA1                 0.045   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.045   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.045   nuclear receptor coactivator 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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