Guide to the Human Genome
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Name: NCOA1 Sequence: fasta or formatted (1399aa) NCBI GI: 22538457
Description:

nuclear receptor coactivator 1 isoform 2

Referenced in:

Nuclear Receptors
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [1441aa] nuclear receptor coactivator 1 isoform 1
alt prot [1440aa] nuclear receptor coactivator 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         77           2
 C cysteine            1.6         22           1
 D aspartate           4.8         67           3
 E glutamate           4.9         69           2
 F phenylalanine       2.5         35           3
 G glycine             6.2         87           3
 H histidine           1.5         21           1
 I isoleucine          4.1         57           2
 K lysine              3.9         55           3
 L leucine             8.6        121           3
 M methionine          3.6         50           2
 N asparagine          6.4         90           4
 P proline             8.4        118           3
 Q glutamine           8.7        122           3
 R arginine            4.6         64           3
 S serine             12.2        171           4
 T threonine           6.1         85           3
 V valine              4.5         63           2
 W tryptophan          0.3          4           1
 Y tyrosine            1.5         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.991   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.991   nuclear receptor coactivator 1 isoform 1 
NCOA2                 0.203   nuclear receptor coactivator 2 
NCOA3                 0.169   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.169   nuclear receptor coactivator 3 isoform b 
SIM1                  0.024   single-minded homolog 1 
ARNT2                 0.022   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
CLOCK                 0.021   clock 
SIM2                  0.021   single-minded homolog 2 long isoform 
SIM2                  0.021   single-minded homolog 2 short isoform 
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
NPAS2                 0.020   neuronal PAS domain protein 2 
HIF1A                 0.018   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.018   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofor...
ARNTL2                0.018   aryl hydrocarbon receptor nuclear translocator-like ...
AHRR                  0.017   arylhydrocarbon receptor repressor 
ARNT                  0.017   aryl hydrocarbon receptor nuclear translocator isofo...
NPAS3                 0.017   neuronal PAS domain protein 3 isoform 1 
HIF3A                 0.016   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.016   hypoxia inducible factor 3, alpha subunit isoform c ...
AHR                   0.016   aryl hydrocarbon receptor 
NPAS1                 0.016   neuronal PAS domain protein 1 
DSPP                  0.016   dentin sialophosphoprotein preproprotein 
HIF3A                 0.016   hypoxia inducible factor 3, alpha subunit isoform b ...
EPAS1                 0.015   endothelial PAS domain protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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