SIM2 10928

Name: SIM2	Sequence: fasta or formatted (570aa)		NCBI GI: 194239684
Description: single-minded homolog 2 short isoform		Referenced in: Helix-Loop-Helix Transcription Factors
Other entries for this name: alt prot [667aa] single-minded homolog 2 long isoform
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 36 3 C cysteine 1.8 10 1 D aspartate 3.0 17 1 E glutamate 5.6 32 1 F phenylalanine 3.2 18 2 G glycine 6.7 38 3 H histidine 4.2 24 3 I isoleucine 3.0 17 2 K lysine 6.1 35 2 L leucine 11.2 64 3 M methionine 2.3 13 1 N asparagine 2.3 13 1 P proline 6.7 38 2 Q glutamine 4.6 26 2 R arginine 4.4 25 2 S serine 11.2 64 4 T threonine 5.4 31 2 V valine 6.0 34 2 W tryptophan 1.2 7 1 Y tyrosine 4.9 28 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 single-minded homolog 2 short isoform SIM2 0.919 single-minded homolog 2 long isoform SIM1 0.573 single-minded homolog 1 NPAS3 0.243 neuronal PAS domain protein 3 isoform 1 NPAS3 0.237 neuronal PAS domain protein 3 isoform 2 HIF1A 0.220 hypoxia-inducible factor 1, alpha subunit isoform 2 ... HIF1A 0.220 hypoxia-inducible factor 1, alpha subunit isoform 1 [... NPAS1 0.219 neuronal PAS domain protein 1 EPAS1 0.193 endothelial PAS domain protein 1 HIF3A 0.179 hypoxia inducible factor 3, alpha subunit isoform a ... HIF3A 0.179 hypoxia inducible factor 3, alpha subunit isoform c ... HIF3A 0.144 hypoxia inducible factor 3, alpha subunit isoform b ... AHR 0.090 aryl hydrocarbon receptor ARNTL 0.087 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.087 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.087 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL2 0.079 aryl hydrocarbon receptor nuclear translocator-like ... ARNT2 0.078 aryl hydrocarbon receptor nuclear translocator 2 [Ho... NPAS4 0.071 neuronal PAS domain protein 4 CLOCK 0.070 clock ARNT 0.067 aryl hydrocarbon receptor nuclear translocator isofo... ARNT 0.067 aryl hydrocarbon receptor nuclear translocator isofor... NPAS2 0.058 neuronal PAS domain protein 2 AHRR 0.058 arylhydrocarbon receptor repressor NCOA1 0.051 nuclear receptor coactivator 1 isoform 2 NCOA1 0.051 nuclear receptor coactivator 1 isoform 3 NCOA1 0.051 nuclear receptor coactivator 1 isoform 1 ARNT 0.039 aryl hydrocarbon receptor nuclear translocator isofo... NCOA2 0.038 nuclear receptor coactivator 2 NCOA3 0.030 nuclear receptor coactivator 3 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.