Guide to the Human Genome
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Name: NCOA3 Sequence: fasta or formatted (1420aa) NCBI GI: 32307124
Description:

nuclear receptor coactivator 3 isoform b

Referenced in:

MicroRNAs
Nuclear Receptors
Thyroid and Thyroid Hormone Receptor
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [1424aa] nuclear receptor coactivator 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         70           3
 C cysteine            1.1         16           1
 D aspartate           4.5         64           3
 E glutamate           4.2         60           2
 F phenylalanine       2.4         34           2
 G glycine             8.4        119           2
 H histidine           2.0         29           2
 I isoleucine          3.0         43           2
 K lysine              3.9         55           3
 L leucine             7.8        111           3
 M methionine          5.0         71           3
 N asparagine          6.6         94           3
 P proline             7.8        111           3
 Q glutamine          10.2        145          29
 R arginine            4.8         68           3
 S serine             12.5        177           4
 T threonine           4.4         63           2
 V valine              4.1         58           2
 W tryptophan          0.4          5           1
 Y tyrosine            1.9         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor coactivator 3 isoform b 
NCOA3                 0.998   nuclear receptor coactivator 3 isoform a 
NCOA2                 0.348   nuclear receptor coactivator 2 
NCOA1                 0.166   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.166   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.166   nuclear receptor coactivator 1 isoform 1 
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
MED15                 0.022   mediator complex subunit 15 isoform a 
MED15                 0.022   mediator complex subunit 15 isoform b 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
MAML2                 0.020   mastermind-like 2 
ARNTL2                0.020   aryl hydrocarbon receptor nuclear translocator-like ...
MED12                 0.019   mediator complex subunit 12 
ARNT2                 0.019   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
EP400                 0.019   E1A binding protein p400 
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
CLOCK                 0.019   clock 
PAXIP1                0.018   PAX interacting protein 1 
FOXP2                 0.018   forkhead box P2 isoform I 
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofor...
NCOA6                 0.018   nuclear receptor coactivator 6 
FOXP2                 0.018   forkhead box P2 isoform III 
FOXP2                 0.018   forkhead box P2 isoform II 
NFAT5                 0.018   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.018   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.018   nuclear factor of activated T-cells 5 isoform d [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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