Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SIM1 Sequence: fasta or formatted (766aa) NCBI GI: 21614542
Description:

single-minded homolog 1

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         50           2
 C cysteine            2.1         16           1
 D aspartate           5.1         39           1
 E glutamate           5.6         43           3
 F phenylalanine       3.0         23           2
 G glycine             6.7         51           2
 H histidine           5.7         44           2
 I isoleucine          4.0         31           2
 K lysine              4.6         35           2
 L leucine             8.6         66           3
 M methionine          1.8         14           1
 N asparagine          2.9         22           1
 P proline             5.5         42           3
 Q glutamine           4.3         33           2
 R arginine            5.7         44           2
 S serine             12.1         93           3
 T threonine           5.9         45           2
 V valine              4.3         33           2
 W tryptophan          0.9          7           2
 Y tyrosine            4.6         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   single-minded homolog 1 
SIM2                  0.419   single-minded homolog 2 long isoform 
SIM2                  0.419   single-minded homolog 2 short isoform 
NPAS3                 0.176   neuronal PAS domain protein 3 isoform 1 
NPAS3                 0.171   neuronal PAS domain protein 3 isoform 2 
NPAS1                 0.162   neuronal PAS domain protein 1 
HIF1A                 0.157   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.157   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
EPAS1                 0.140   endothelial PAS domain protein 1 
HIF3A                 0.131   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.131   hypoxia inducible factor 3, alpha subunit isoform c ...
HIF3A                 0.104   hypoxia inducible factor 3, alpha subunit isoform b ...
ARNTL                 0.068   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.068   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.068   aryl hydrocarbon receptor nuclear translocator-like ...
AHR                   0.062   aryl hydrocarbon receptor 
ARNTL2                0.061   aryl hydrocarbon receptor nuclear translocator-like ...
CLOCK                 0.057   clock 
ARNT2                 0.057   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
ARNT                  0.052   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.052   aryl hydrocarbon receptor nuclear translocator isofor...
NPAS4                 0.046   neuronal PAS domain protein 4 
NPAS2                 0.044   neuronal PAS domain protein 2 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.043   nuclear receptor coactivator 1 isoform 1 
AHRR                  0.035   arylhydrocarbon receptor repressor 
NCOA2                 0.032   nuclear receptor coactivator 2 
ARNT                  0.028   aryl hydrocarbon receptor nuclear translocator isofo...
NCOA3                 0.025   nuclear receptor coactivator 3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press