SIM1 13468

Name: SIM1	Sequence: fasta or formatted (766aa)		NCBI GI: 21614542
Description: single-minded homolog 1		Referenced in: Helix-Loop-Helix Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 50 2 C cysteine 2.1 16 1 D aspartate 5.1 39 1 E glutamate 5.6 43 3 F phenylalanine 3.0 23 2 G glycine 6.7 51 2 H histidine 5.7 44 2 I isoleucine 4.0 31 2 K lysine 4.6 35 2 L leucine 8.6 66 3 M methionine 1.8 14 1 N asparagine 2.9 22 1 P proline 5.5 42 3 Q glutamine 4.3 33 2 R arginine 5.7 44 2 S serine 12.1 93 3 T threonine 5.9 45 2 V valine 4.3 33 2 W tryptophan 0.9 7 2 Y tyrosine 4.6 35 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 single-minded homolog 1 SIM2 0.419 single-minded homolog 2 long isoform SIM2 0.419 single-minded homolog 2 short isoform NPAS3 0.176 neuronal PAS domain protein 3 isoform 1 NPAS3 0.171 neuronal PAS domain protein 3 isoform 2 NPAS1 0.162 neuronal PAS domain protein 1 HIF1A 0.157 hypoxia-inducible factor 1, alpha subunit isoform 2 ... HIF1A 0.157 hypoxia-inducible factor 1, alpha subunit isoform 1 [... EPAS1 0.140 endothelial PAS domain protein 1 HIF3A 0.131 hypoxia inducible factor 3, alpha subunit isoform a ... HIF3A 0.131 hypoxia inducible factor 3, alpha subunit isoform c ... HIF3A 0.104 hypoxia inducible factor 3, alpha subunit isoform b ... ARNTL 0.068 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.068 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.068 aryl hydrocarbon receptor nuclear translocator-like ... AHR 0.062 aryl hydrocarbon receptor ARNTL2 0.061 aryl hydrocarbon receptor nuclear translocator-like ... CLOCK 0.057 clock ARNT2 0.057 aryl hydrocarbon receptor nuclear translocator 2 [Ho... ARNT 0.052 aryl hydrocarbon receptor nuclear translocator isofo... ARNT 0.052 aryl hydrocarbon receptor nuclear translocator isofor... NPAS4 0.046 neuronal PAS domain protein 4 NPAS2 0.044 neuronal PAS domain protein 2 NCOA1 0.043 nuclear receptor coactivator 1 isoform 2 NCOA1 0.043 nuclear receptor coactivator 1 isoform 3 NCOA1 0.043 nuclear receptor coactivator 1 isoform 1 AHRR 0.035 arylhydrocarbon receptor repressor NCOA2 0.032 nuclear receptor coactivator 2 ARNT 0.028 aryl hydrocarbon receptor nuclear translocator isofo... NCOA3 0.025 nuclear receptor coactivator 3 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.