NPAS1 13947

Name: NPAS1	Sequence: fasta or formatted (590aa)		NCBI GI: 22027482
Description: neuronal PAS domain protein 1		Referenced in: Neurons Helix-Loop-Helix Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 50 2 C cysteine 1.0 6 1 D aspartate 3.1 18 1 E glutamate 5.9 35 2 F phenylalanine 3.1 18 2 G glycine 11.0 65 3 H histidine 3.2 19 2 I isoleucine 2.4 14 1 K lysine 3.6 21 1 L leucine 11.4 67 2 M methionine 1.2 7 1 N asparagine 0.7 4 1 P proline 11.4 67 3 Q glutamine 3.9 23 1 R arginine 6.1 36 2 S serine 9.0 53 9 T threonine 4.6 27 1 V valine 6.9 41 2 W tryptophan 1.0 6 1 Y tyrosine 2.2 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 neuronal PAS domain protein 1 NPAS3 0.377 neuronal PAS domain protein 3 isoform 1 NPAS3 0.371 neuronal PAS domain protein 3 isoform 2 SIM1 0.213 single-minded homolog 1 SIM2 0.212 single-minded homolog 2 long isoform SIM2 0.212 single-minded homolog 2 short isoform HIF1A 0.159 hypoxia-inducible factor 1, alpha subunit isoform 2 ... HIF1A 0.159 hypoxia-inducible factor 1, alpha subunit isoform 1 [... HIF3A 0.153 hypoxia inducible factor 3, alpha subunit isoform a ... HIF3A 0.153 hypoxia inducible factor 3, alpha subunit isoform c ... EPAS1 0.149 endothelial PAS domain protein 1 HIF3A 0.116 hypoxia inducible factor 3, alpha subunit isoform b ... AHR 0.077 aryl hydrocarbon receptor ARNTL2 0.068 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.063 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.063 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.063 aryl hydrocarbon receptor nuclear translocator-like ... AHRR 0.057 arylhydrocarbon receptor repressor NPAS4 0.057 neuronal PAS domain protein 4 CLOCK 0.047 clock ARNT2 0.044 aryl hydrocarbon receptor nuclear translocator 2 [Ho... ARNT 0.042 aryl hydrocarbon receptor nuclear translocator isofo... ARNT 0.042 aryl hydrocarbon receptor nuclear translocator isofor... NCOA1 0.037 nuclear receptor coactivator 1 isoform 2 NCOA1 0.037 nuclear receptor coactivator 1 isoform 3 NCOA1 0.037 nuclear receptor coactivator 1 isoform 1 ARNT 0.034 aryl hydrocarbon receptor nuclear translocator isofo... NCOA2 0.029 nuclear receptor coactivator 2 NPAS2 0.029 neuronal PAS domain protein 2 NCOA3 0.026 nuclear receptor coactivator 3 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.