Guide to the Human Genome
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Name: PER3 Sequence: fasta or formatted (1201aa) NCBI GI: 8567388
Description:

period 3

Referenced in:

Circadian Rhythms

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         82           2
 C cysteine            2.2         26           2
 D aspartate           3.4         41           2
 E glutamate           7.0         84           3
 F phenylalanine       3.2         38           2
 G glycine             5.2         63           3
 H histidine           3.0         36           2
 I isoleucine          4.1         49           2
 K lysine              4.9         59           2
 L leucine             7.3         88           3
 M methionine          2.0         24           1
 N asparagine          3.4         41           2
 P proline             9.2        110           3
 Q glutamine           5.8         70           3
 R arginine            4.7         56           2
 S serine             12.7        153           4
 T threonine           6.5         78           3
 V valine              5.0         60           2
 W tryptophan          0.7          9           1
 Y tyrosine            2.8         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   period 3 
PER1                  0.249   period 1 
PER2                  0.244   period 2 
ARNTL                 0.025   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.025   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.025   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL2                0.025   aryl hydrocarbon receptor nuclear translocator-like ...
MUC2                  0.022   mucin 2 precursor 
ARNT                  0.019   aryl hydrocarbon receptor nuclear translocator isofor...
ARNT2                 0.019   aryl hydrocarbon receptor nuclear translocator 2 [Ho...
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofo...
RERE                  0.018   atrophin-1 like protein isoform b 
RERE                  0.018   atrophin-1 like protein isoform a 
RERE                  0.018   atrophin-1 like protein isoform a 
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.017   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
PTPN23                0.017   protein tyrosine phosphatase, non-receptor type 23 [...
POLR2A                0.016   DNA-directed RNA polymerase II A 
NPAS2                 0.016   neuronal PAS domain protein 2 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
MAGEC1                0.016   melanoma antigen family C, 1 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
LOC100133756          0.015   PREDICTED: hypothetical protein, partial 
ATN1                  0.015   atrophin-1 
ATN1                  0.015   atrophin-1 
SRCAP                 0.015   Snf2-related CBP activator protein 
NHSL1                 0.014   NHS-like 1 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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