Guide to the Human Genome
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Name: VSIG8 Sequence: fasta or formatted (414aa) NCBI GI: 61966777
Description:

V-set and immunoglobulin domain containing 8

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         38           4
 C cysteine            4.6         19           4
 D aspartate           4.8         20           2
 E glutamate           3.9         16           1
 F phenylalanine       1.2          5           1
 G glycine            11.8         49           3
 H histidine           2.9         12           2
 I isoleucine          3.4         14           2
 K lysine              3.4         14           2
 L leucine             8.7         36           3
 M methionine          1.4          6           1
 N asparagine          4.1         17           2
 P proline             5.3         22           3
 Q glutamine           3.6         15           2
 R arginine            5.1         21           2
 S serine              8.2         34           2
 T threonine           3.1         13           2
 V valine              9.4         39           2
 W tryptophan          1.0          4           1
 Y tyrosine            4.8         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and immunoglobulin domain containing 8 
C1orf204              0.199   hypothetical protein LOC284677 
CXADR                 0.139   coxsackie virus and adenovirus receptor precursor [Ho...
ASAM                  0.094   adipocyte-specific adhesion molecule 
GPA33                 0.077   transmembrane glycoprotein A33 precursor 
IGSF11                0.074   immunoglobulin superfamily, member 11 isoform b [Hom...
IGSF11                0.074   immunoglobulin superfamily, member 11 isoform a [Hom...
VSIG2                 0.060   V-set and immunoglobulin domain containing 2 
ESAM                  0.058   endothelial cell adhesion molecule 
F11R                  0.055   F11 receptor precursor 
VSIG1                 0.053   V-set and immunoglobulin domain containing 1 
JAM3                  0.041   junctional adhesion molecule 3 precursor 
JAM2                  0.041   junctional adhesion molecule 2 precursor 
NEGR1                 0.034   neuronal growth regulator 1 
HEPACAM2              0.029   HEPACAM family member 2 isoform 2 
HEPACAM2              0.029   HEPACAM family member 2 isoform 1 
NTM                   0.028   neurotrimin isoform 4 
NTM                   0.028   neurotrimin isoform 3 
NTM                   0.028   neurotrimin isoform 2 
NTM                   0.028   neurotrimin isoform 1 
IGSF10                0.025   immunoglobulin superfamily, member 10 
ROBO1                 0.024   roundabout 1 isoform b 
ROBO1                 0.024   roundabout 1 isoform a 
DSCAM                 0.024   Down syndrome cell adhesion molecule isoform CHD2-42...
TTN                   0.023   titin isoform N2-A 
LOC100292387          0.023   PREDICTED: similar to hemicentin 2 
HMCN2                 0.023   PREDICTED: hemicentin 2 
LOC100289200          0.023   PREDICTED: hypothetical protein XP_002342997 
OPCML                 0.020   opioid binding protein/cell adhesion molecule-like i...
OPCML                 0.020   opioid binding protein/cell adhesion molecule-like is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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