Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IGSF10 Sequence: fasta or formatted (2623aa) NCBI GI: 38490688
Description:

immunoglobulin superfamily, member 10

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        147           3
 C cysteine            1.5         40           1
 D aspartate           4.3        112           2
 E glutamate           4.5        118           2
 F phenylalanine       3.2         85           1
 G glycine             5.0        132           2
 H histidine           2.9         75           2
 I isoleucine          6.0        157           2
 K lysine              5.8        152           2
 L leucine             8.5        223           4
 M methionine          2.1         55           1
 N asparagine          4.8        125           2
 P proline             7.3        191           3
 Q glutamine           4.1        107           2
 R arginine            5.3        138           2
 S serine              9.7        254           3
 T threonine           9.4        246           3
 V valine              6.5        171           2
 W tryptophan          1.0         25           1
 Y tyrosine            2.7         70           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 10 
MXRA5                 0.174   adlican 
HMCN1                 0.059   hemicentin 1 
HMCN2                 0.052   PREDICTED: hemicentin 2 
HMCN2                 0.052   PREDICTED: hemicentin 2 
HMCN2                 0.052   PREDICTED: hemicentin 2 
LOC100292387          0.042   PREDICTED: similar to hemicentin 2 
TTN                   0.041   titin isoform N2-A 
DSCAML1               0.035   Down syndrome cell adhesion molecule like 1 
HSPG2                 0.033   heparan sulfate proteoglycan 2 
DSCAM                 0.031   Down syndrome cell adhesion molecule isoform CHD2-42...
ROBO1                 0.028   roundabout 1 isoform d 
ROBO1                 0.028   roundabout 1 isoform c 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 2 
ROBO2                 0.028   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.028   roundabout, axon guidance receptor, homolog 2 isofor...
PXDN                  0.028   peroxidasin 
ROBO1                 0.028   roundabout 1 isoform b 
ROBO1                 0.028   roundabout 1 isoform a 
CNTN3                 0.028   contactin 3 
PTK7                  0.027   PTK7 protein tyrosine kinase 7 isoform a precursor [...
L1CAM                 0.026   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.026   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.026   L1 cell adhesion molecule isoform 1 precursor 
ROBO3                 0.025   roundabout, axon guidance receptor, homolog 3 
CNTN5                 0.025   contactin 5 isoform long 
CNTN5                 0.025   contactin 5 isoform short 
NFASC                 0.025   neurofascin isoform 5 precursor 
NFASC                 0.025   neurofascin isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press